Gene detail

Detail information of Am09G004400.1 Annotation

Gene ID	Annotation
Am09G004400.1	Ribosomal protein L2 family

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G004400.1	mRNA	Chr09	22122830	22124696	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM09G004400.1
AACCTACAATAAGGGACTTCGACGAAGTTCATGATCTGAATGATCAAAATGAAGAGGCTGAAACTGAAGAACCTGAAGAACCCATTGCTGTCGAACCTGTCAGAAGGTCACAGAGGGAAAGGCAGAGATCAGTGAGGCTAGAAGGATTCGACACATTCCCAGATTCTGCTATTACAACAGAGGGAGACCTGACACACTTTGCATTAATGGCTGAAGCAGAACCAGTGAGCCTGGAAGAAGCTTTTAGTCACAAGCAGTGGAAGGAAGCAATGATTGATGAGCTGAAGTCAATCGAAAGGAATGGCACTTGGAAGCTAGTCGAACTTCCAAGGCAAAAGAAAGCTATAGGCGTGAAATGGGTCTACAAGACCAAAGTCAAGCCCAATGGAGAAGTGGCCAAGTACAAGGCCAGACTAGTAGCCAAAGGTTTCCTGCAGAAACCTGGTTTGGATTTCAATGAGGTCTTTGCCCCATTAGCCAGGATCGAAACCATAAGATTGGTAGTAGCATTGGCAAGTCATATTGGGTGGCCCCTACATCAACTAAATGTAAAGTCAGCATTTCTCAATGGACCTCTGGAGGAGGAAGTCTATGTTTGTCAACCACCTAGTTTTGAGTCGAAGGGTCAAGAAGACATGGTTTTTAAGCTTGAGAAAGCCCTATATGGACTCAAGCAAGCCCCAAGGGCATGGAACAAGAGAATTGATGCTTTTCTCTTAGCTCAGAAGTTCATTAGATGCACCAATGAACATGGAGTATATGTGAAGAAGAATGGAACTTCGACTCAGTTGTTGTTGTGCCTGTATGTAGATGATCTACTAGTAACTGGCAGCAATGAAGTCGGAGTCTTTAAGAAAGTGATGATGTCTGAGTTCGAAATGAGTGATCTAGGACATCTATCATATTTCTTGGGAATGGAATTTACAAAGACAAGTAAGAGAATATTTCTGCATCAGTCGAAGTATGCAGCTGATATCCTGAACCGATTCGACATGATCAATTGCAAGGAGGTTTCGACACCAGCAGACACAAGCAGCAAGCTGTCGAAAGATGATGAAGGGATTGAAGTAGATGCCACCCTCTTCAAACAGATTGTGGGTTCCCTGAGGTACCTGTGCAACACTCGACCTGACATTATGTTTAGTGTCGGAATGATCAGCAGATTCATGGAGAAGCCGAAAAACTCTCATCTAGTAGCTGCCAAAAGAGTACTAAGGTATATAAAGGGAACACAAAGTTATGGGATTCTATTCCCTAGCAAGTCTGAGTCGAAGAATGATGCTGGAGTGTTTGGTTACACTGACTCCGACTGGAGTGGAGACAAGAATGATCGAAAGAGTACAAGTGGGTATGTCTTCATGTATGGAACGACACCCATCTCATGGTGCTCGAAGAAGCAAAGCATTGTAGCACTATCCTCCTGTGAAGCAGAGTACGTGGCTGCTTCCTTTGCAGCATGTCAAGCATCATGGCTGAGCATGCTATTGGTCGAAATTGGAGTGCACAGGGTCGAAGCAATGAAGTTGTTGATCGACAACAAGTCTGCGATAGATCTCGCCAAGAATCCTGTCGCACATGGTAGATCGAAGCACATAGAGACCAAATATCACTTCCTGCGTGATCAAGTAAACAATGAGAAGCTGAATCTGGAATATTGCTGTTCGAAACTTCAAGTAGCTGATGCAATGACCAAGCCATTGCAAAAGGGAAGATTCGAAGAACTGAGAACAATGCTTGGGATGATGTCACTCAGCAATGTGAATTAGGAGGGAATATTGAGATATACCTTGTAATTCTATTACTTGTAATAAACATAGGTGTAGTTAGTAACCTAGTCGAAATGGGCTGGTCGAAATTATGGGCCTGGGCCTGTTTCATTGTATATATATATAGGCGTTAGTAGTATGTAATTTGTACCCTACTTTTATGAAAATCAGTGCAGCTTTTACTATTCCATTGATATTGCCCTAATCATTCTCTAACACCTTTGCGCCGCCACTTCCTTTTCTTCTCCCTTTCACGTGTTTATTCCCAACACAATCCCCTTACCCTGCATTGCCATCCATATATTTAACTGTTAAGAAGTTGAGCCTGCAGCGCCTCGCCGCAGGTTTGGCTGGCCGGCGGGCGAGCCCGTAAATATAATAATATAATAATTAAATATAAAAATAACTGATAAGGGAATTTGGGATAAAAAGATGAAGGTTGGCGACTTGCCCAAGCTCCCTACAAACAAAGCACAACTTGCGGAAAAAATATTTAACAATGATTTAAATAACAAAAGAATAAAAAAAATATTTAAACATGGTGGGCTGGCACAACCTGCATGTGGCTCGAAAAGTTGGGAGGTTAGGCAGTGCAGGTTATACGATGTGGTGGGCTGAGGAGTACCAATCCACTTCACCCTTTTTTGCTAATCGGTGTTTGCTATGCCTAACCCATTTTTCCGCCCCTACCTTTGTCCCATAAGCTAAGATAAATCCAAATAAGTAATAACCTTTAAGCACCCAAAAGTTGAATGCTTTTGGAATTGAGTTAGGTCAAAATCGAAATTCTAATATTTAAAAATCTAAACAAAACCGTTAAATACCCATAAAATTGAACACAAATGGGAAAATAAAACCCTTTTTCTCTACCACAACTCTTCGCAAACCTAAATCCCCAAATCTCATTTTCAAAAAGGACACAACTTAGACCATCTCTAACAGTAGTTTTTTTAGGGTATCCCTAGTAATAATTAAAAAATATTATGTTGGTAGGAAAGGAAGGGTATCTTGGGTAGAACATTTCTAAAAGTGTTATAGGGGGTATATCACGAGAAAAGGGGTGTAAGAAGCTATACTAACCCTATTTTCTTCTTCCTTTAAAAATCAAGATAGGTTTCTTTAGCCCGGCCCATATAAATCCAACAAAACACACTACACTCCCCTTCCTCTGTATAAACCCTAATCCCATCCCATTTCCTCAACGTGTTCACTGCTTCAGAGGCGCAAATCCAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03947.21	Ribosomal_L2_C	98	225	3.70E-46
PF00181.26	Ribosomal_L2	13	90	1.60E-17

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0003723	RNA binding	Molecular Function
GO:0022626	cytosolic ribosome	Cellular Component
GO:0009507	chloroplast	Cellular Component
GO:0009733	response to auxin	Biological Process

InterPro

InterPro term	Description
IPR008991	Translation protein SH3-like domain superfamily
IPR022666	Ribosomal Proteins L2, RNA binding domain
IPR014726	Ribosomal protein L2, domain 3
IPR014722	Ribosomal protein L2, domain 2
IPR022669	Ribosomal protein L2, C-terminal
IPR022671	Ribosomal protein L2, conserved site
IPR023672	Ribosomal protein L2, archaeal-type
IPR002171	Ribosomal protein L2
IPR012340	Nucleic acid-binding, OB-fold

trEMBL

trEMBL term	Description
V7CDF5	_

SwissProt

SwissProt term	Description
RL83_ARATH	Large ribosomal subunit protein uL2x

KEGG

KO	Description	Enzyme
K02938	large subunit ribosomal protein L8e

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G36130	Ribosomal protein L2 family
Medicago sativa L.	MsG0780039668.01.T01	_
Oryza sativa L.	LOC_Os12g38000.1	60S ribosomal protein L8, putative, expressed
Cucumis sativus L.	Csa001131	_
Glycyrrhiza uralensis Fisch.	Glyur000073s00007784.1	_
Codonopsis lanceolata	Cl_chr06_07340T	_
Arachis hypogaea L.	AH12G27400.1	60S ribosomal protein L8-3 like

Expression pattern