Gene detail

Detail information of Am09G004140.1 Annotation

Gene ID	Annotation
Am09G004140.1	5'-3' exonuclease family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G004140.1	mRNA	Chr09	21383297	21388894	-

Sequences

CDS:

>Am09G004140.1
ATGGGTGTTGGCGGTAATTTCTGGGATTTGTTGAAGCCCTATGCGCGCAACGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTCGACCTCTCCTTCTGGATTGTTCAAAATGGGAATGCCATTAAGACACCGGTCCGGAAACCTCACCTCAGACTCATGTTTTTCCGCACCATCAATTTATTCTCTAAGTTTGGAGCCTTTCCAGTGTTTGTTGTTGATGGGACACCTTCGCCATTGAAATCACAGGCCAGGATTGCGAGATTTTTCCGGTCTTCTGGAATTGAATTGAGTAGCTTACCAGTGCCTGAAAAAGGTGTTTCAGCTGAGAGGAACCGTTCATTTTCAAGTTGTGTTCAAGAATGTGTGGAACTTATTGAGCTACTTGGGATGCCTGTATTAAAGGCTAAAGGAGAGGCTGAAGCACTTTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCATGCATCACAGCTGACAGTGATGCATTTCTCTTTGGGGCCAAATGCGTCATAAAATCTTTCAGTTCCAATTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACATTTAATAGCTATCTCTCTTTTGGTTGGAAATGATTATGATATGAGCGGTGTTCAAGGGATTGGAGTTGATACCGCTCTTCGTTTTGTTCAAGCTTTCAGTGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTCTCAAGTTCCTATCAGCATTAAATCAGAGGACGATATGGATATGGTTGGGAATTCCCCAAATGCAAAACAACCTCACTGCTCTTTCTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAACTTTTCATGTGAATTTTGTGCCCCAATTGACAATGAAGGTTGTTTGTTAAAACCGGAGGGTTTTAAATGTGATTGCTTCTCTTGTGGTATGGATAGGAAACATAAAGAGCAGAAAAGGCTGGAAATTTGGCACACAAAAATTTGTGACAAGATTGCAAAGGAGCAAAATTTTCCAAACAATGAAATTATTGATATGTATTTATGCAATGATAATGGTTACTTTTCTGCCAATGATGGCCCTCAGGTCTCATGGGAAAGACCCAATATTGGGCTACTGATTGATTTTTTAAACTTCCATCAAAACTGGGAGCCGTCCTACATTCGACGGATGATGTTTTCTATGATGTCCACCATCTTCTGGAGAGAGATGGCTACAACCACATCAGATAATTTGTTATTTGGGCAGTATGAATTTGATTCTATAGAACGTGTGAAGACGAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGGGCAATGGCCAACATTGCCCCTAGAATTCCATCAACTAAATCTGGCATGCAACAAGATGCAGTAGAGCTTGATGAAACAGTGGATCTACTAGATGATTGTGATGGTCCTGATATTCGTGAAGATGATGGATGTTTGTTGACAGATGAGAATATGGAGCTTGTAGGGGCTGCTTTTCCGGAAGAAGTTGAAAGGTTTTGGAAGGAACAGGAACTAAAGGGTATGAAGAAAAGGAAGAGCTCAAGTTTAAGATGCGAAGAAAATGAAGAACCAGCAACACCAAACTCAAGAAGCATACAGCTAAATATTAAAACGTTCTATCCAACAATCAAAGGCACAGAAAAGTCATCCAAAAATATTGACAGCCAGGGAAGTGGAAGCTCAAAAGGGAAAAAGAAAACAGCAAGTCCAAATCTTTCAAAATCTGCTAGGCGTCGCCTTTTGTTTGACTAG

Protein:

Promoter(3k):

>AM09G004140.1
TCAGGATTCCTTTTCTTTTTTCTTCATTCATTTTATTTTCATTTTCATTTTTTGTCTTGGTTTATGTATTTTTCAATACACAGCCATTTTTCCTTCATACAGTCGTTTCATAAAGCCGAGTTTGGGCTATAAAGTCTCAGCCCAAATTAAATTGGGCTTGTTAGCCTGGACCGAAAAGGCTCTCGCACCCAATACGAGCCGAGTAGTCTGCTTTGCCACCTCTAACTCGGTAGGCCAGGACTGATCCACTGCCAGTGGGTCGGTCTCGCCGGTCGTTGAACTCGCATGCCATTCGACCATTGGGAAAAGTGAAGAATTGTTTTTAAAAAATGAACAATTTTAATTACTCTATCCAAACAAGAAATTTTAAGAATGAATAATTTTAATTATCTCATCCAAACAAATAATTTTGAAAATGGAAGGATTTCAGTCGATGCATTTGAATTGCCTAGAATTTGAAATTCCCTAGAATTTGAAATTCACTAGAATTTTCAAATGCCCCATCCAAATGCTCCCTAAAAATTATAAAATTCTTGTAAAGTCTTTTAAAATCTGTCAATCTTTTATTTACTAAAAAATTCCTTTAAAATCCTAAACCAATAAGGTCTAATGATTTACAAGGAAATGTGTCAACATTGTTAGTTAGGTGTACAAAATTATAAACATAACTAGCATGTAAGTCATGTACTCATTCATGTAATAAAAAACTTATTATTTTGATATTTCTTATTCACTTGTACGAATTATCACACTGAACACGTGATCTTTCAACATTATAGGGAAAAACGAGAGGCAAAGAAATTCTACCTTACTAACTCCTTTAAAAGGAATTAAAATAATGAATTAGTTCCCTTCTAATTAACTACCTACTTCCATAACCCAGAACGTGAGATTCAGCAGTCGGAGCTGAATCTCCCTTAACCAAGAGTCGGGGGTTCGATCCCTGCCTTGGGTACGGAGCAGCGTTAAAACTTTAGGCCAGCTGTCCTGTCCCTCGAGGCACCTACAATGAGCAAGGGATACCCGAGTTTACCAAAAAAAAAAACTACCTACTTCCAACCAAGGGGAGTTTTGGGACAAACAAAAATATGTGGGAGTGCATGTTAGCAAAAATGGGGTGTCTTTAGTTACACAGAAAAAAATCAGCACTTGATTCCCTAGTCACATAAATAAAGGCCATTACTTTCCCCACACCCCCTCCTACTCTTTCACACCCCCTAACTTCTAAAAACCCTAAAATACCCTCAACTTAAAAAAAAAAACACACAGACTCACACCCTCACACCCCTCACTCCTCTCACTTTCCCTTTCACTCTCCCTCTCATTCGAACCCTATCTTTCACTCTCCCTCTCACTCAACTTCTCACAACTCACTCAATCTCACCCAATCTCCCACTCAATCTTCTCCACAAACACCCTCAAGACCACCTGGGTTTTGTTCGCCTCCTCTCACTCTCTCTAATCGTTCCATTTTCATTCAGGTAACCCTCTCTCCCTTCTGTACATTTGGGTTTTTTTTCTTCTGTGCATCTGCTGTGTTCGCATGACCTCATGCGAACACGTGAAAACGAAGGTGTTCGAATGAGGTCATGCGAACACCGTTCGAATGAGGCCATGCGAACACCTGTTCAAATGGGGTTGTTCGAACAGGTGCGAATGATTCTGTTCGAACAGGTGCGAATGATGCTGTTCGAACAGGTGTGGTAGTATTGTTTCTGTTATTTTGCTGGTTATGTTGCTTAATTGGTTTAATGGTTGTTGTTTCAGATATGGTGAGGCATCGTGGCGGTAGTTCGCAACAGCCGGAGCGTAGGCCACCCCCGACGGCTTCCGAACGCAAACAGAGGCAAGATGGAGCTGAACCTTCCCGGAGGGGTAGGCGTAGGGACAGATTAGACGTCCCTCCTCCCCCACCGGAGGTTGATGATATTGGCCGGGATAGTGAGCGTGATCTCCATAACTGAAAAATAGCCAGTCCCGTAATCAAGACGGTTGTACTTTCGGTAACGTATACGCTCCACGTCTTTACGCCACGCTCCCTCTGGACGAATCTTCCTCTCAGCCTTTTCCTTCAGTTGGGCGAAGGTGATGTCCTTACTCATCCTGCAGAATACATGGTTAGGACAACGAAACACAACACCATGTTCGTCGGTGGTGACAGTCCCATGGTGATGAAGGGCCGTTAGGAATTTGTCGTTTGAGTACTGGGTTGGGCACAATTGCCATTCCATTTCAGCTTGGTTGTAGCTGTCAAGAGGGAGAGTAGGTTTTGGTGAAGAAGCAAATTAGGGTTTAGTGAAGAAGGTCTGAGGATGTGAACCCCCTTTTATAATAGGCATGGTGAAATGTCAGCCGTTGATTTCATTTTTAGATCACAAATCTGAGCCGTTTAAATTCTATCCGTTCAGACACATTTTCCAAAGGGATTGACATCCACTCCTTTATCTGACACACATTTGACTGATTGTAAGCCGTTGAACACCTGTTCGCATGACCCCATTCGAACACCTGTTCGCATGACCACATTCGAACCTGTTCGCATGACCCCATTCGAACAGGTGAAAAACACCCAAGAGGGTGTGTCCCCATATTTAACACACGCGAATGGCCTCGTGCGAACCTGTTCGAAGGCCCGTGTTCGAACAGGTGAAAATTCGTGAAAAAAAAGAGGTTTGGCCTGGCCTTTTGGTCATTTCACACCCTTATGGGGTGTGTTTTGAGTAGGAGGGGGTGTGGGAAAAGCAAACGCCTAAATAAACAATCTAAGCCCAAACCTAAATGGGCTTTTGAACTCTCATGAGTCATCCCTTAATTGTAACGGCACAAAACCAACGGCTAGATTATACGCTCTTTTTGCTCAACAAAAAAAAAAAACAACAACAACACACTCTCTTCGTGTTCTTCCTAAGACGAAACCTAACCCAAGGGGAGTTCACTGAAAGATTAAATTTTGATGTTGTTTTCACCTACCCATTTTAGCGATTAAGCAGTAAACAACCG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00867.21	XPG_I	131	213	1.10E-22
PF00752.20	XPG_N	1	89	6.60E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003690	double-stranded DNA binding	Molecular Function
GO:0004527	exonuclease activity	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Molecular Function
GO:0003723	RNA binding	Molecular Function

InterPro

InterPro term	Description
IPR006086	XPG-I domain
IPR006084	XPG/Rad2 endonuclease
IPR006085	XPG, N-terminal
IPR029060	PIN-like domain superfamily
IPR008918	Helix-hairpin-helix motif, class 2
IPR036279	5'-3' exonuclease, C-terminal domain superfamily

trEMBL

trEMBL term	Description
A2Q3P8	_

SwissProt

SwissProt term	Description
GENL1_ARATH	Flap endonuclease GEN-like 1

KEGG

KO	Description	Enzyme
K15338	holliday junction resolvase GEN1/YEN1	[EC: 3.1.-.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G01880	5'-3' exonuclease family protein
Medicago sativa L.	MsG0780039625.01.T01	_
Oryza sativa L.	LOC_Os09g35000.1	flap endonuclease, putative, expressed
Cucumis sativus L.	Csa025623	_
Glycyrrhiza uralensis Fisch.	Glyur000003s00001207.1	_
Codonopsis lanceolata	Cl_chr07_10560T	_
Arachis hypogaea L.	AH04G24820.1	Flap endonuclease GEN-like 1 like

Expression pattern