Gene detail

Detail information of Am09G003750.1 Annotation

Gene ID	Annotation
Am09G003750.1	AGAMOUS-like 20

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G003750.1	mRNA	Chr09	19814134	19833619	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM09G003750.1
CGATACTTGTCGGATATGTCCGGATACGTATATTGGGAGTATCCTGAAATTTATATTTATTTTTAAATCAAAAAAAGACCAGGTACTTATCGGATACGTATCCTGGGAGTATCCTGAAATTTATATTTATATTTATTTGATATTTTTGTATTACTATTTGTCTTTGAATTAGAATAGTCCTACTTTGAATTCTAATGCAATGTTTTTTATTTTAATTTATTTTAGGTATTATAGTAGTGTGTGGCTTATTTTAGGAAGAATATATTTTAAAATGGGTGGGGAAAAAACATTTAAATATGCTTACTTATTTTGATTACAAGTATCTTTTTTGTAAATCTAATTATATTTATTGAATATTATGAGCAATTGTCAATTAGTAAAGTGAAGTATCTTTAGTTATGTTTTATATTTTTAAATTTTTATTTAATTTTTTATCGAAGTATCCCTGCCGTATCGTATCTTGATTTTTAAAATTTTCCCGTATCCACGTATCATGTCGTATCGTATCCCGTATCGTATCTCGTATACGGGCTTCATTGGTGTAGAGTTTTCCTTTATTATTGTAAGGGAAAAAGGCCCTATGAAAGAAAATCTATGATGTGGAACTTTGCTAGCCACTTCATTACATCACAAGTTATCCACCAAACAAAAAAAAATCATTAAAATCACATTATCAGATGTTCAATGCCCATGATCAATTTATTGCATATCAAACGAGTGGACTAAGTTATTGTTAAAAAAACAAGTGGACTAAACTACATACCAAAAAGGGTAAAATCTTTTCTACAAGTGAATAAAATCAGTCGACGTCGGGAGTATTTATTGAGGAAAAAAAATAATATTTTACAATTCATGAAAACAAAAACAAATACAAATAGAGAAAGAATAAAATTAAAATTAATTAAAATTGAAAGGAAACATGTACTGTAAGTAGCATAAAAGGCTATGATGACAATTGACAAAGGTGTTGTTGCGTTTTCTAATTGTGATTGGTTCATGGTGTATGTCATTGTACGGACGAGGTTGACATGTTTCTAACAATGTACTATTTCTTATGTTTTTAACTATGGTGTTGTGTCCCACATTCCCCCACACCTGCACGGCTGCACCTGTAGCCCCCACTCACTCCCCTGCTTCCAACCAATGCCTTTTTTATTTCAACCCTCAACCACATATTTATGTTTTCTATAACGGGTTCTTCCAAATCCAAACACTATTTAAGATAAAGTATTGAATAGTTTTTATAGTTTCAACATAGTAAACATTTTTGTAAAAATGGGTCAAAATTTGTATTTATCTAGTCAAAATTTTGAACTAAATATATTCCTTTTTTTGACTCACATTTACTTATATTTAGAAATAAACTAGTATCATTTTTTTGCCAAAAATTGTTATTATTTATTTTATTGTATTTTATTTGGTTTAGAACCAACTAATCAAATAAAGATTAATTATTATGTATTTTTCGATGTAATTTTTTTACATTATTAACCAATTGTAAATTTTCACGTCATTATTTTAATATTTTGTATATCATATAGAAATATCTTGTATTAGGGGATATCTTACCACGTGAAGTTTTATCTATGTCTTTGGATCTCGCTTGCTTTGTATGGTGGACTACTCTGTATTGGCTGTTTAGTCTTTGTTGTTCAGTGTCTCGATTCTAGAGGGTTGTGAGTACCCTAAATACTCACAATATGTAATATACTTTTGGGTGTTCAAAAGTCGTACATATCACGACTTTTGATTGATTAATAGTGTAATTTTTTTTACCAACAATGAATATTAATTAAACGCATTAATCATTTAGACCGAGTGGTCTACCAGACTATCCCACAACTTAGGCTATGCGTCCCCACTAAGACATTATAAGACTAGACTCTGATTCGACTAAATTGAACATGATTTTACTTAGTGATTCTCAATCACCCAATGTGAGCGAGGCTACAAGAATTCGAACTTTGAGTTCTCCAAATTTTTCTCTTTATAAGTCAAGTTGCTTCCACTCAATCACCTAACGACCTTACTGTAAAGTTATTATATAATTTATAAATTTATAAATTCTGTTTTTAATATGATCAACAATTCCTTAGTCAAGTTGTTATTGGTTGGTTCATTTACTTTGAATAATTCCCCATTCATTGCCTTTTAACCAAAAATAAATCTTTAAGGGGGCCCATAAACTCGTTTTTTACCAAACAAGGAAAAAGATGAGGTTTTGAAAATTCAATGAGAATAAAAAAGTTTCTTAATATGGTGGGGCTGAGAAGGAACCAAAGGTGATAGGTTGGATGAATAAGGAAAGCTAATATTCAATATATGCCTTTAACTTTTTCCACCAATTTCTCTCTCCACACACAACACAAGTTCTCACTCTTTTTTGGGTGCTTCCCTTTCCTTTTTTTTCTTCCTTCTTTCTTCCCTTTTCTAGTCAGAACCAAAGATTTCTGGGATTTTGCCAATTTGGTGTAAATCAACAACTACAACTACTTGAATTTTAAGTTGCTTTTCTGCCTGGTAATTAAGAAATAATCAACCAATCATTATTTTATATATATATTTTCTGAAAAGAAAATCCATTTTTTTGATATTTGTTTGTTTCGTATTTAGATCCCTTATTAGTAAGGACAATTTATGCTGTTTTTTTACAATCTGGGTTATTTTTGGATTTTTTTCTTCTGCCTTATTATAATTTTTGGTTTCATTAATTGGTTGACCTTTGATAAGTGAGATTCTTATATTTTGGAATATTTTTGTGTGTTTCAGGTTTCTGGGATTCAAGTGTTTACTCTAGAAGGCTCAATTTTGCTGCAAATCTTACTTGGTTAGGACTCCTAGCTATCTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCATGTAGAGAACAAGGAAAAACTTTTTTTTTTTAATTTTATTTATTTATTTTGGTGATTTTAATTTGTTTTAGAAGAAAGAATATTAAGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00319.21	SRF-TF	10	57	2.30E-27
PF01486.20	K-box	83	170	1.80E-26

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	FLCP29

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0046983	protein dimerization activity	Molecular Function
GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function

InterPro

InterPro term	Description
IPR036879	Transcription factor, MADS-box superfamily
IPR002100	Transcription factor, MADS-box
IPR002487	Transcription factor, K-box
IPR033896	MADS MEF2-like

trEMBL

trEMBL term	Description
A0A8B8K8B4	_

SwissProt

SwissProt term	Description
SOC1_ARATH	MADS-box protein SOC1

KEGG

KO	Description	Enzyme
K09264	MADS-box transcription factor, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G45660	AGAMOUS-like 20
Medicago sativa L.	MsG0880043409.01.T01	_
Oryza sativa L.	LOC_Os10g39130.1	OsMADS56 - MADS-box family gene with MIKCc type-box, expressed
Cucumis sativus L.	Csa025231	_
Glycyrrhiza uralensis Fisch.	Glyur000003s00001167.1	_
Codonopsis lanceolata	Cl_chr02_44470T	_
Arachis hypogaea L.	AH04G24130.1	MADS-box protein SOC1 like

Expression pattern