Gene detail

Detail information of Am09G003400.1 Annotation

Gene ID	Annotation
Am09G003400.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G003400.1	mRNA	Chr09	18624202	18632574	+

Sequences

CDS:

>Am09G003400.1
ATGGACGCAGTGTTATCCGTTGTGGCGATTTCACTTCTGCTTGGTGCCATCATTGCCCTCGCTTTCTTCAACACCTATTACCGTAAACGCCAATCGGAAGTCCGATCCATCGCAAATCCAAATCCCGATCCTAACCCTATCTCGAAGCCCCTTCCTAATAAGAAGTCTCATGGCCCCAAACACCATTCCTCGGATAAGGATCAAAGCAAGCGGCATCATCCATTGGATTTGAATACCTTGAAAGGCCACGGTGATGCTGTTACAGGGATATGCTTTTCCCCTGATGGACGAACTTTGGCAACAGCTTGTGCTGATGGAGTGGTGAGAGTATTCAAGTTGGATGATGCTTCGAGTAAAAGTTTCAAGTTCCTGAGAATTAATCTGCCTGCTGGAGGTCATCCAACTGCAGTTGCATTTGCTGGTGATACATCCTCTATTGTTGTGTCATCTCACATGCTCTCTGGTTGCTCATTGTACATGTATGGAGAAGAGAAACCCAATACTTCTGAAAATAAGCCACAAACAAAGCTTCCTCTCCCGGAGATTAAGTGGGAACATCATAAAGTTCATGATAAAAAGTCAATAATTACTTTGTTTGGAACCTCTGCTACTTATGGCAGTGCTGATGGAAGTACATTAATTGCCTCGTGTTCAGAAGGGACTGACATCATTCTTTGGCATGGAAAAACTGGGAAGAGTTTGGGACACGTGGATACAAATCAACTAAAAAACAACATGGCTGCTATATCACCCAATGGGCGTTTTATTGCAGCGGCAGCATTTACTGCAGATGTAAAGGTCTGGGAGATTGTGTATGCAAAGGATGGATCTGTCAAGGAACTTTCAAATGTCATGCAGCTTAAGGGGCATAAGAGTGCAGCAACTTGGTTATGCTTTTCTCCAAGCTCTGAGCAAATAATCACAGCATCCAAGGATGGTTCATTAAGAATATGGAATATCAATGTTCGCTATCATCTTGATGAGGATCCAAAGACACTGAAGGTGTTCCCAATTCCTCTTCATGATTCTACCGGTGCTACATTGCACTATGATCGCCTCAGTATTTCCCCTGATGGAAAAATATTGGCAGCAACCCATGGTTCCACATTGCAGTGGTTATCTGTTGAGACCGGAAAGGTTTTGGATACAGCTGAAAAAGCTCATGATGGTATGCCCAAGATTTGA

Protein:

Promoter(3k):

>AM09G003400.1
GAGACTTTGCGATATGAGCTGACCTTCGTAAGAGCTTACATTTATCCTAAGACGCACCCAAACCCTAAGGACTACCCTTATATCTTGAAACTTCAATTCTTGAGCTTGATTGTCTTGGATTGTGACTTTAATACTTTGTCACTTTTGTCACCGTTGGCCATCAACTTTGGCTTTGGTCAACTTTTACTTTTATCACCTTTAGCTTTTGTCTTTTTCATCATCAAAACCTCTTAACCACTTCATCATCAAACTTAGCCTGCAACACAAGATATCTACAATAAGTTGGCCAAGGTTTATCTCTCGACACTCGTGTAGTTGAATGGCCAAAGGAATATACATTTTTGCCACTTGGAGTGACGAAGAGCAGAAAACATAGAAGGAGAGCCAAAAAGTGAGAAAAGCAATGTGTTCTTCGTCAGAAACTTCTTCAGTGGTGATGACATGTTTATCTTCAATGTATCCTTTGAAAGAAGCACGCTTGAAGTCGAATTCATGGTTGCTGCCAGTAGTGTTAGGGTCGAAAACTTCTCCTATTGGTTTAAGTCCAGTTATGGCAGCCACATCTAACAGAGTAGGAGTAAGCATGCCACATTTCAGATGTAGGCTATTGGTGGTCAGCTCCCAAAAGTGTAAAGCCGCAATAAGCATTGGGCTTTGATATCTAGGCCCATATCTCGACAACTGAATCAGGTCGAAGATGCCTTGTGCTTTCCAGGTTTCTCCTTTCTTTGACTCAATTTTGTTAAGCCAGTTAATGTAATGTGGGTGATTCTTGTCGACTGGTGGTGAAGACCTAAAAGCCCTATTTGGGTTACTCAAGAAATCCATCACATATGGTCCTTTGTTGAAAATCCTAGGGCTATATCTATGATAGCTAGGGAAAACCTCTTTGATTTTGTCAGAATCATAACCAGGGTGAGGAAGAGGGCCTAAGAATGCATGATTGTGGCTTAGGAGAAGGAATTAGTACCTGAGATTGCAAATTTTTTGCTTTTTCTTCTGTCAAAGCTGGTTCAGCAACGAAAGGCTGTTTTCCAGAAGCTACAGTGCCAGAAGCTTGAACGTTGGAAGATGACGGCATTAATGGAAGTTGAGTTTTTTCAAGTGGTTTCGCTGCTTCGCTGTTCGGGTTTTTCAAGAATAAAGGTCGTGTAGTGTTGGATGAAGAAATGAAGCCTCGCAAATGGAGTTTTTCTGGTGCGTAAACACTGGGTTTCGCAAAGAAGAAGAAGAGAAAGGGTTCGCAGAAGCAGGGAGAGAGTAAAAAAGGGAAAATGAAATGAAGAAGATGCTTTTGTAGCTGTTTTAGCAAGAGAGAGAAAAAGAAAACCTTTAGTTTTTCTTTAAAGAGCAGTTATTTGCAATAAGTAGTGGGGAGTTCCAACACAAAGCGTGGCCCACTAAATCTGAGAAAATGGCGCCATAAAGTAACTTTACTGGAAGTGTCTTTTCAATTCTAAAAACTGACGGTAGTGACGTCATAAGATATTGTAATTTCAAAAACGTCATTTTTTGTCTTCATTTAAAACTCAGTCGAAAAAGACATTTTTGGGGGGTAATTTGTTAGTCTGCATTTTCGACAGTCTCAATTAAATGCAGTCAACGAGGTTTGACTTGCTAATTTCAAGAGGAAAAGTATTGATTTCGACAGTGAGAAGTTTTCCCGAGAAGGTTCGACGCAGTGCTTAACTTAGTGGAAATTGAAGAATTGAAGCCAATGGTTCGACGAGAAGAAAGTTAGTGATAGATCAGAAGTCAAGTGCTCGTTGTAGAATTACCATTGCAGTTATTGTGGTCGAAGACATGGCAGTTACCATTGCAGTTATTGTAGTCGAAGACATGGTAGTTACCATTTTTTAAATTCTATGTACAGTTAGTTAGTTATTGTGTTTCCCTCCTTGTATAAATAGTAGTTTTCATAGGAAAAACAAGTCACAAACTCACATACAGAATTCTGAAACTCAAACTTCCAATATCACAGAAAACGAGTTAGAGAACAATGTAAGAACTTGTGCACCATTCTCTTTACAATTGATGCAATTCCACTTTTACTTTCTTAAGTTTTCTGCATTTTATTTGTTTTCTTTTCAACTTCTATTTAGAATCCTCCCTCCCTTCTGGAGATAATTTCGACGGTTATCTTCATATTTTCAAATTTAAACCGCAAGAACACTCATAATTTCTGGAAAAAGCTTTAACACAAATGTTCTAGGATTTTCTAGTTGATCCTGCAAGCAACATTAATTTGTAACTAGCGGTGTTCACAAAAAAACACGGTAAACAACAGGACAGGAGTAGCAAAATTGCCAAATGCAGGCCCTACTTCATTATATGATAAGATATTAATTTTTTTTAAATATCATTACATTATGCATTTCGTGTTTCTAGATTAATGCTCTTTGTTTATTTATCAGTGCAAATTTTAACACTAATTATATAATTGTACAATACACAATTCTAAATTATATTGTTAGGTCTCTCTAATTTTTTTATTAAACTCATTAGATAGGTCAAGAATAAATATTATAAATATATTTATAATTTTAATTAGGCAGTTATTTTATTCAAAAAAAGTTAGTAAACTATTAATTTTAAATTTCAAAGGTCTTAATTTTTTAGGCTTTTATACAAAAATAGAGAAGATTTTAATTTTTATTCTTGCAAGTTAATATAATGAGCTAAATCGATCTATTCATGAGTTTGAGTCGATCGAGTTCGAACTAAAAAAAATATTTATGTCGAAGTGGTGTCGAGGCTTCGAGCCACAAAGCTAATTGGATTTGTATTGAGTTGAGTTGAGTTGAGTCGAGTCGAACGATTTTAACTCCCCATAAATAATATATCGGTGACATGGATAGTTTCGTAACGATCCACGTGTGCAACTAGCAAACCCTGCTCTTCCATCCTGATATAAAACCCCGCCATTTCCATCTCCCCCAAAAACCTTCATCTTCGTCGTCATTTCACCAGATCAAATTCTTTCTCCGTCTCCGATCAGTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	77	111	5.40E-19
PF00400.35	WD40	283	319	5.40E-19

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0016757	glycosyltransferase activity	Molecular Function
GO:0006412	translation	Biological Process
GO:1990904	ribonucleoprotein complex	Cellular Component
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0005840	ribosome	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat

trEMBL

trEMBL term	Description
A0A2K3P0S2	_

SwissProt

SwissProt term	Description
TBL2_HUMAN	Transducin beta-like protein 2

KEGG

KO	Description	Enzyme
K23325	transducin beta-like protein 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G00090	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0780039570.01.T01	_
Oryza sativa L.	LOC_Os03g64110.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa000282	_
Glycyrrhiza uralensis Fisch.	Glyur000923s00029697.1	_
Codonopsis lanceolata	Cl_chr07_01100T	_
Arachis hypogaea L.	AH04G23430.1	Transducin beta-like protein 2 like

Expression pattern