Detail information of Am09G002420.1 Annotation
Gene IDAnnotation
Am09G002420.1 Pentatricopeptide repeat (PPR) superfamily protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am09G002420.1mRNAChr091400288014004584-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF13041.9PPR_22593021.60E-57
PF13041.9PPR_22913401.60E-57
PF13041.9PPR_23263741.60E-57
PF13041.9PPR_23614091.60E-57
PF01535.23PPR3293595.70E-39
PF01535.23PPR3643945.70E-39
PF12854.10PPR_13233552.70E-37
PF12854.10PPR_13583902.70E-37
PF13812.9PPR_32483042.80E-30
PF13812.9PPR_33153732.80E-30
PF17177.7PPR_long3144371.20E-14
Gene family
Gene familySubfamily
Carbohydrate-Active enzymes FamilyGT1

Gene Ontology
GO termDescriptionCategory
GO:0003729mRNA bindingMolecular Function
GO:0010019chloroplast-nucleus signaling pathwayBiological Process
GO:0009507chloroplastCellular Component
GO:0031930mitochondria-nucleus signaling pathwayBiological Process
GO:0005739mitochondrionCellular Component

InterPro
InterPro termDescription
IPR011990Tetratricopeptide-like helical domain superfamily
IPR002885Pentatricopeptide repeat

trEMBL
trEMBL termDescription
A0AA86RVU9 _

SwissProt
SwissProt termDescription
PP193_ARATHPentatricopeptide repeat-containing protein At2g38420, mitochondrial

KEGG
KODescriptionEnzyme
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Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT2G38420 Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.MsG0780039369.01.T01 _
Oryza sativa L.LOC_Os07g32900.1PPR repeat containing protein, expressed
Cucumis sativus L.Csa004905 _
Glycyrrhiza uralensis Fisch.Glyur000190s00015722.1 _
Codonopsis lanceolataCl_chr02_64820T _
Arachis hypogaea L.AH06G16590.1Pentatricopeptide repeat-containing protein At2g38420, mitochondrial like

Expression pattern