Gene detail

Detail information of Am09G001550.1 Annotation

Gene ID	Annotation
Am09G001550.1	cation exchanger 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G001550.1	mRNA	Chr09	9346554	9350441	-

Sequences

CDS:

>Am09G001550.1
ATGAGTTCTCAACACCAACAAGAACCATGGCTTCTGGAGAATGGCAACCCAAAGGTGTTGACGAAGGAGATGAGGCACGGTCACGGCCGGAGCCGGACCGCGCACAACATGTCTTCTTCGTCATTGCGCAAGAAATCCGACCATAGTTTAATTGTGAACCATGTTCGATGTGCTTTGCTTAGAAATTTGTTGGTTAATATTCAAGAAGTTATTCTTGGTACTAAGCTTTCTCTTCTCTTTCCTGCCATTCCTGCTGCTATCGTTGCTAAATACTGTGGCTTAGGAAGATCATGGATTTTTATATTGAGCTTAATTGGACTCACTCCACTTGCTGAACGTACAAGCTTCCTCACAGAACAAATTGCTTATTTCACTGGTCCCACAGTTGGAGGACTACTAAATGCAACATGTGGAAATGTTACTGAGCTTATCATAGCAATATTTGCACTTAGCACCAACAAAGTTGCTGTGGTCAAATATTCTCTCTTAGGTTCAATCCTTTCAAATCTTCTTTTAGTTCTTGGAACTTCTCTACTTTGTGGTGGCATTGCAAACATTAGTGTGGAGCAAAAATATGATAGAAGACAAGCTGATGCAAACTCACTTATGCTACTTTTGGCATTGTTATGCCATTTACTTCCATTGCTGTTTAGATACAGTGCTGACTCAGCTGATCTCACAGCAGAACCTTCTCTGTACTTGTCAAGAACTGCTAGCATTGTGATGTTGGTTGCATATTTTGCTTACCTTGTGTTTCAACTTTTTACACATAGGCAATTGTTTGAAGCTGAAGATGAAGAAGAAGGTGACAACAATGGTTCAGAAGAAGAGGCTGTGATTGGATTTTGGAGTGGGTTTGCTTGGCTGGTTGGAATGACTATTTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACCATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGTTTCCTCAGCATAATTTTGCTACCAATAGTGGGGAATGCAGCTGAACATGCAGGAGCAATTATATTTGCTTTCAAGAACAAACTGGACATTTCTTTAGGTGTTGCATTGGGTTCTGCTACTCAAATTAGCATGTTTGCGGTTCCTCTCTGTGTGATTGTTGCTTGGACAATGGGAGTTAAAATGGACTTGAACTTCAACCTCTTAGAGACAGGTTCTCTTGCTTTGGCAATTTTAGTCACAGCCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTAATTCTCCTCTTTTGCTATGTTGTTATTGGTGCTTGCTTCTTTGTACAAAGAACACCCTTAAACGAACCTGATGTTGGTAACATCACTCTGAAATCAGTCACAGATGCAGTTTTAAGCGCCTAG

Protein:

Promoter(3k):

>AM09G001550.1
AATTGATTGGTTCACAGTCCAACTACTTTAAATTCATACACTAAGCCTAATATGACCATGATATTCATCAACATACCCTCCATTCATCAGTGGTATGCTGGATTGCTTGAATTGAGCCTTATAAATATATTTATAAAAGAAAATCACATAGTAGTTAAAGGATACATTTTTATGTAGCTTTCCAAATTTCATGGCTACACGTAATATGGCCATGATATTGTTAGCCTAATATATAGGCCATTTACATGATTTTCATTTAGACTAGAAGTAGGATATGTTCTTTATGTTTGTCCCTCTCTCATGTGCATGACATCTAATACTTTAAAAATTTTATCTTTTGAGATACAATGAGCAAAAGTGTCACTGATCAACATGATCTTCTTTTCTTTAAGATCCACGTGCAGTCCCTTATTGAAAAGACCAGATCCATTTGGCGGTGATGGAAATTTGGACGAGTTTGTTCTCAACCATGCGAAGATCGAAAAAGACTAAATAGTTTGATATCGTAGTTATTATTTCCTGGATGATCCTCATGTTTGTCATTTTGTTGAACGATTGTGATATTATTTAAGTCAAATAGTTTGCTATTTGTTCATTGTTCTTCTTTTGTGTTGTGTAATTCGAACAAAATTACTATTACTTCATCTTATTCTAATAAATAAATATGGTGATGGAGTCATAGCTTTTTAAGAACACGGGCCAAAGATTTTAATCGTGAAGAAGTATTCTTCTTTACTAACACTATGAAACAAGAAAACAATAAAGATTCTCGATGATGCAACTTAGCTGAAACATCCGCCCATCTTCCAGTTATGTTTTAATATCTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAGAAACTGTCAATATTTACATATTACTTTTTCTGTGATTTAATAAAACACAATAGAAATTCAAAAATAAATTTTGAAAATTGTTATTTATAGAGATTTTTTATCTAGGGAAATTTTAGTATTTTTAACATATTAATTTTAAATGTAGAAAATGGATGCTAAAAGTATAGCTCAAGGATAAACTCTTGGCGTATTAATAAAAATAATTAAATATATACGATGCTTATCACAAGACTACAATTACATGGTAAAATAATTATCAAATATTTTGTTATTATAATTTTCTTTTGGTAATGTATATATAATTCAGATGAAATTTTACAAGACTTCATAATATTTTACATAAAAACATTGATATTTATATATAAATTATTATACTTTAATATAACTCATGATTGAAATAAATCAGACATTATATAAGTTTTTATATTTTTTGTAAATAATATATATGCTTAAATACCATTTTGGTCTCTGCAATTATACTGAATATCCATTTTAGTCCCTGTAAAAATATTTCTTTTAAAATAGTCCCTACAAATATATTTTTTTATCTCTTTTGGTCTCTACTATGATTTTTATACTGATGTGGCATATTTTAGCGGATGTGGCAGGGACCAAAACAAATAAAAAAAATAATATTTGCAGGGACCAAAACAGATAAAAAAATATTTGTAGGGACCAAAATAGATAAAAAATATGCCAAAATCAGTATAAAAATCATAGCAGGGACCAAAACAGATAAAAAAAATATTTGCAGGGACTATTTTAAAAAGAAATATTTTTACAGGGACTAAAACGGATATTCAGTGTAATACCTAATATTGAATTGAGTCAATCATACTAATACAATGATAACTATGAATATAAAGAGTCAAAACTTTAAAAATATTAGACATGCATCGAATATATTTTCACTATACATATAATTTACTAAAAAGACGATGTATACTCGTGCAGAGCACGGGTAATAGACACTAGCCCTTCCCATATGTGACTTTTTTGAAAATATTGTAGTCAAGTTTGTATGTATCGCATGAATGACACATTCGAAATTAAAATTATTGAAAAGATACTGATATGTATTTTCAAAATTTTGTGACATCTTGGGTTATATTACTAATCATTTATGCAAAAATTTTAATAGTTTATATAATTAAATAAATTAGTACAGAATCACAGGTTACTTTTTGTGTTCCGCTAAGTTAATATAAAAATGTTTAACCTTTTTTTACCTAATCAAACTTTAAATAAATACAATAAGTATATATACAAAAATATCATTCGTCACTTTGGTAAAAAAACATAATTAGTCAACTCAAAGTATTTAAACGAGTATATATATATATATATATATATATATAGAGAGAGAGAGAGAGATAAATTTAAAAATAAATATTATACTAAAATTAAATTCAACAAAGAAAATGTCGACCCGTGCAGCGCACGGGTCATACACACTAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATTATTATTGCTATAAATTTATGGTAATTTACCAAACACATCTCCACGTCATCCGCCGGTGAAATCCGTTATCCGCTATCGAATGCGATTTTTAAAACAGAATCTAATAATCTAGATGTATTTTCTACTTTAAATTAAACACCATTCATTCACTCTCAAATTTATTCAACCAAAAAAAAAGCATACTTATCACTTCACGCGGAGTATTAAAATTCATTGTATAACGGTAAATGTAGAAAATAAATGAGAACATTTAAAAATTTATGATAAGCAATTATTTAAAAAACTAAAAATACAAAGTAATTAAATTTTTCCCTATTATATATTCTAGTAAATTAAAAAAATAACATTTTAAAAATCCTTACAAAATAAGCATAAGAAGAAACTTCGCGGAAGTTGCATAGTTTGGAAGGTTGTGACTCCCACACATGATATAAATACACACATACATAATCAAAGCAATATACATGCAGTTGTAGTAACCATAGAAATTGCGAGAGTTACAAAATACCATTACCATACACTGTCACTTTTTTTGTCTTTTGCTTAAGCTATAGCAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01699.27	Na_Ca_ex	98	254	1.80E-38
PF01699.27	Na_Ca_ex	285	423	1.80E-38

Gene family

Gene family	Subfamily
Transporter family	CaCA

Gene Ontology

GO term	Description	Category
GO:0009705	plant-type vacuole membrane	Cellular Component
GO:0006874	intracellular calcium ion homeostasis	Biological Process
GO:1902600	proton transmembrane transport	Biological Process
GO:0004523	RNA-DNA hybrid ribonuclease activity	Molecular Function
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR004837	Sodium/calcium exchanger membrane region
IPR044880	NCX, central ion-binding domain superfamily
IPR004798	Calcium/proton exchanger CAX-like
IPR004713	Calcium/proton exchanger

trEMBL

trEMBL term	Description
E0A236	_

SwissProt

SwissProt term	Description
CAX3_ARATH	Vacuolar cation/proton exchanger 3

KEGG

KO	Description	Enzyme
K07300	Ca2+:H+ antiporter

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G51860	cation exchanger 3
Medicago sativa L.	MsG0780039233.01.T01	_
Oryza sativa L.	LOC_Os01g37690.1	sodium/calcium exchanger protein, putative, expressed
Cucumis sativus L.	Csa018864	_
Glycyrrhiza uralensis Fisch.	Glyur001610s00030569.2	_
Codonopsis lanceolata	Cl_chr05_41000T	_
Arachis hypogaea L.	AH04G19590.1	Vacuolar cation/proton exchanger 3 like

Expression pattern