Gene detail

Detail information of Am09G000940.1 Annotation

Gene ID	Annotation
Am09G000940.1	DNA directed RNA polymerase, 7 kDa subunit

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G000940.1	mRNA	Chr09	5637569	5639557	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM09G000940.1
ATTTTCCAAGTCATTTACTTTCCTTGCTATTTATTTTCTTGCACTTTTATTTTCTAAGTCATTTACTTTCCTTGCTATTTATTTTCTTGCACTTTTATTTTCTTGTCATTTACAATTCTGCTATTTATAATTTTGCAATTTACCGCTTTCTTTTATTTCTCGCTATTTAACTTTATGTTTTCTTCTTTTATTTTCTTTTCTCCTCTTTTGTCTACAATGATCATGAGTGAGTAGACTTTACTAAAACATTCCTTCTTTCTAAAAACACTTTCTTTTCAGTTAATCAACTTTGAAAAATTAAATTGGTATTCACTTAGGCTCTCCCTGTGGACCGATACTCTTTTATTACGCGATACGACCCGTGCACTTGCGGGGCTATCAATAGAGAGATTCAATAGAGAAGTTGCTCAAGTCTGGAACCTCAACGACTCCTTCCGTCTTTACTTCATGGAGGCTGGTCTTCGTGAAGGAAGTCTATTTCAGATAGACGTCGGGTTCAACCAAGTTGAGTCGCTTGCCGAGTTCCTCCAGCGATCTCAAAAGTATATCGATCATGAAGAAGGGATTAACACAGGAAGGTCGCGTTTCACCTAGGTCTCGGAATGAGCCTACGGGCGTGATGTAATCCGACTTTGTAAATGTCAACCATCTAATATATATATGGTTCGGTTACGATTTTCCTCACACTGATTGCTTAGTAAAAGTGAGTTCCGAGGTTGGAGGGAAGGATTTGGGATCGGTCGAACGATCGCCTTAAAGTTTCACGCTAAGACCAGAACCCGAGACACCGAGTTCAACATCGCTAGAGGATCGAAACTCCACCTAGGATCGGAACTCCAGATGATTCTTGCTGATCCGAGGGTTCCCCTCGGCCCTGCTCGTCTCTAGCTTCCTCTTCTCCGACAATAAACTGACACCTCGAGTCCCTCAGGTGGTCGCGTTTTAACATGGCCGAGGCTGCCATTACCCTGAAGGATGAGTTCGATCTGGGCCGAGTCCTGGTAAACTGCCCTGAAGGCGACTTTAAACTGACACCTCGAGTCACTCAGGTGGTCACGTTTTAAATGGCCAAGGCTGCCATTGCCCTGAAGGACGAGTTCGATCTGGGCCGAGTCCTGGTAAACTGCCCTAAAGGCGACTTTAAACTGACACCTCGAGTCACTCAGGTGGTCACGTTTTAAATGGCCGAGGCTACCATTACCCTGAAGGGCGAGTTAGATCTGGGCCGAGTCCTGGTAAACTGCCTTGAAGGCGACTTTAAACTGACACATCGAGTCACTCAGGTGGTCACGCTTTAAATTGCCGAGGCTGCCATTACCCTGAAGGGCGAGTTCGATCTGGGCCGAGTCCTGGTAAACTGCCCTGAAGGCGACTTTAAACTGACACCTCGAGTCACTCAGGTGGTCACGTTTTAAATGGCCAAGGCTGCCATTACCCTGAAGGACGAGTTCGATCTGGGCCGAGTCCTGGTAAACTGCCCTAAAGGCGACTTTAAACTGACACCTCGAGTCACGTTTTAAATGGCCGAGGCTGCCATTCCCCTGAAGGGCGAGTTCGATCTGGACCGAGTCTTGGTAAACTGCCCTGAAGGCGACTTTAAACTGACACCTCGAGTCACTCAGGTGGTCACGCTTTAAATGGCTGAGGCTGCCATTACCCTGAAGGGCGAGTTCGATCTGGGCCGAGTCCTGGTAAACTGCCCTGAAGGCGACTTTAAACTGACACCTCGAGTCACTCAGGTGGTCACGTTTTAAATGGCCGAGGTTGCGATTACCCTGAAGGGCGAGTTCGATCTGGGTCGAATCACTGCCCTGAAGGCGACTTTAAACTGACACCTCGAGTCACTCAGGTGGTCACGTTTTTAACATTGCCGAGGCTGGTGGTAGACACCCTCGCTGGTATCAGCCCGGCCTCGAAGATCTTTGACAAGACATGTATCTCGGGAGCTCCGAGACTGGTGGCAGACACCCTCGCTGGTATAAGCCTGGCCTCGAAGATCTTTGACAAGACCCGTATCTCGGGCGCTCCGAGGTTGGTGGCAGACACCCTTGCTGGTATAAGCCCGACCTCGAAGAATACTGCCCTAAAGGCGACTTTAAATTGACACCTCGAGTCCCTCAGGTGGTCACGTTTTTAACATTGCCGAGGCTGGTGGCAGACACCCTCGCTGGTATCAGCCCGGCCTCGAAGATCATTGACAAGACCCGTATCTCGGGCGCTCCGAGGCTGGTGGTAGACACCCTCGCTGGTATAAGCCCGGCCTCGAAGAATACTGTCCTAACGCCGACATTAAACTGACAACTCGAGTCACTCGGTGGTCACATCATTTCCTGACACTCCGAGTCTTCCGAGGCTGGGGGCAGACACCTTCGTAGCTATAAGCCCGTCCTTGTAGAAGGTCGCAATCTAAAGTCTGAATCCCGGATGTTCAGAGGAACCTTGAGTCACTCAACAGTCATCTCTGTCTCGGGAACACTAGCCCGGTTTCGTGAAGCTCGGACAAGGCTTTCAAGTCTAGCTCGTCCCAAGACGACCCGACTTGGGGGGCAACTGTTACGGATTGGGGCTTTATCACTATGGCCCAACACCAAATGCAGATCCATCAACCAATGGTGGAGATTAAAGACCTAGATCCAATGGTTCCCATTGGATCCCAAAACCTATAAATAAGCATTCAATGCAATGTCTAAGGTACACACTCTTTCCTACTCTTTACCTCTAATCAGTTCCGTAGCTGACTTGAGCGTCGGAGTGTCCCCGCAGGTACCACCTGCCCCGGATCGGAAATGGAGCTCGGTTGATCAAGACCAACCCCTACCAACTATCTCGGATCGGACCTTGTGTCTAAGATCGGATACAGGTCCAGAGATACGGTACAGAACATTATACAACAATAGAGTCCAATAGTTTAACCTTTTTGTCCAATTGAACCTCTTGCATTGATCTTGTTAAACTAGGCTTGGGAAATTTCTTCATTTTCAATATCTCTATCCATGCACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03604.16	DNA_RNApol_7kD	15	47	1.20E-08

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0006414	translational elongation	Biological Process
GO:0003746	translation elongation factor activity	Molecular Function
GO:0000418	RNA polymerase IV complex	Cellular Component

InterPro

InterPro term	Description
IPR029040	RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR039747	DNA-directed RNA polymerases I, II, and III subunit RPABC4

trEMBL

trEMBL term	Description
A0A0E0C341	_

SwissProt

SwissProt term	Description
NRPBC_ARATH	DNA-directed RNA polymerases II, IV and V subunit 12

KEGG

KO	Description	Enzyme
K03009	DNA-directed RNA polymerases I, II, and III subunit RPABC4

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G41010	DNA directed RNA polymerase, 7 kDa subunit
Medicago sativa L.	MsG0780038991.01.T01	_
Oryza sativa L.	LOC_Os01g34614.1	DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed
Cucumis sativus L.	Csa004272	_
Glycyrrhiza uralensis Fisch.	Glyur000289s00018702.1	_
Codonopsis lanceolata	Cl_chr01_42310T	_
Arachis hypogaea L.	AH15G11960.1	DNA-directed RNA polymerases II, IV and V subunit 12 like

Expression pattern