Gene detail

Detail information of Am08G007350.1 Annotation

Gene ID	Annotation
Am08G007350.1	Nucleoporin autopeptidase

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G007350.1	mRNA	Chr08	81969924	81977905	+

Sequences

CDS:

>Am08G007350.1
ATGCAGCTCCCTACCTTTGGGCAGTCATCAACGAGCCCGTTTGGGCAGAACAATTCAGCGTTTGGGCAGACTAATTCAAGTAACAATCCTTTTGCACCTCAACCATTTGGTAGTACAACTCCATTTGGTTCGCAAACCGGTTCTTCCATCTTTGGGGGTACTTCCACGGGTGTATTTGGTGCTGCACAAACGTCTTCTCCATTTGGTGCTTCGTCTTCACCTGCTTTCGGAAGTTCAATGCCTGCATTTGGGTCATCTTCAACTCCAGCATTTGGTAGTTCATCCTCATCATTTGGTGGATCTACAGCTTTTGGTCAGAAGCCTGCTTTTGAAGGTTTTGGCTCTACTCCTACTCAAACCAGTCCATTTGGAAGTGCCACCCAACCGTCACAACCAGCATTTGGTAGCAGTATATTTGGTTCCTCAACACCTTTTGGCGCACCAAGTCAGCCAGCATTTGGTTCAACAGGAACCCCTGCATTTGGTGCAACTAGCACCCCTGCTTTTGGTGCAACTAGCACCCCCGCATTTGGTGCAACAAGCACCCCTGCATTTGGTTCAACCTCGAGCCCAGCTTTTGGTAGCACAGGGAATGCATTTGGTGGTGGGGGAGCATTTGGAGCTTCAAGTAACCCTATGTTTGGTACATCAAGTACCTCTGCATTTGGGGCCTCCAGCTCTCCTGCTTTTGGTGCTTCTAGTACCCCTGCTTTTAGTTTTGGCTCCACTCAGGCTTTTGGTCAGTATAGTTCTGCATTTGGTAGTAGCAGCCCATTTGGAAGTACAACCTCAGCCTTTGGAGGTCAGAGTTCTGCATTTGGATCACAAACTCCAACTGCGGCATTTGGAAATACTGGTATTGGGCAGTCAGGGTTTGGAGGTCAACGGGGTGGTAGTAGAGTAGCTAGTTACTCAGCAACAGCTGAAGCAGATAGTGGTACCTCTGGACAGTCTGCAAAATTGGAGTCCATATCAGCCATGCCTGTTTACAAAGACAAAAGCCATGAGGAGCTAAGATGGGAGGACTATCAATTGGGAGATAAAGGTGGACCACTTCCCTCCGCTCAGTCAACTGGTTTGTCAGGCTTTGGTTCATCTACAACACAGACAAATGCCTTTTCTCCTTCAACACCTGGATTTGGTCAATCATCTTCCAATCCTTTCTCTAGCACTACACCTAATACTAACCCATTTGGTCAATCATCAGCCAATCCTTTCTCTAGCACTACACCTAATCCTAACCCATTTGGTCAATCATCAGCCAATCCTTTCTCTAGCACTACACCTAATCCTAACCCATTTGCACCGAAGACTTCAACTTTTTCTTCTGGATTTGGAACTTCAGCTCCTGCCTTCAGTTCATCAGCTTTTGGTTCTTCAACATCGGCAGCAGCACCTTCTATTTTTGGCTCATCCACATCTCCATTTGGTGCTAACTCTTCATCACAGGCATTTGGGTCATCTACATCCCTGTTTAATACTGCTGCTCAGGGTACATCTTCACCATTTGGCTCAAGCATTTTTGGCAACACCCAGCCATCCCAATTATTTAGCTCTTCAGCCCCTACAATTGCGCAGTCTGGTTCTACTTTCGGACAGAATCCCTCCCCCTTTGGGCAGACTAATACTTTTAGTCAATCAAGCTTGTTCAGTTCACCTTCATCTGGGGTTGCTGGAAACATTTTTTCAAGCAGCGCATCACTCACTTCTAACACTCTGACAGGTTTTGGTCAAACAGCGCCGTCAATTTCAACACCTTTCCAATCTACACAACCTGCTCAGTCCAATGGTGCTTTTTCCTTTAGCAACTTTGGCCAGACGCAGCCTGCTGGTGCAAGTAGCTTTGGTGGAACTCCGGCCATGTTTGGTCAGAATAATTTTGGACTTCAGTCTTCTACCCAGAGCTCTATGACTGTACAAGCAGCACCAATCACAAATCCATTTGGAACACTTCCTGCTTTGCCTCAGATGTCAATTGGTCGAGTTGGAACCACTCCTTCAGTTCAATACGGAATCTCTAGCATGCCTGCCCAAGACAAACCTGCTACTGTAAGCATATCATCTCTATTGACTTCACGGCACCTCTCACAAAGACGAATCAAGTTTCCTCTCAGGAAATATAAGAATGAGGGACCAAAGGTTCCATTCTTTAGTGATGATGAGGGCACTCCAACCACACCAAAGGCTGATGCTCTTTTTATTCCTAGGGAAAATCCAAGGGCATTGGTCATTTGTCCCATGGAGCAGTGGCCTGGAAGAGCTTCTGAGAAGGCGTCTTATTTGAAGGCTAGATTCATCTCTGTGAATGAGAATGAGACTGCATCTGAAAATGGCGTTGTGAAGGAGCAAGTGCAGCCTACACCTACAAAGCAAGCATCCAATTCCAATGGGAGTACTGAAGACCATTCACTACAAAAAGCAGATATGTACAAGACTCTCAGTGGGCACAGAGCTGGTGAGGCTGCCATTGTGTATGAACATGGAGCTGATGTTGAGGCACTCATGCCAAAGCTGCGACGATCTGATTACTTCACACTGCCTCGAATACATGAACTAGCGGCCAAGGAAAGGGCTGAACCAGGATTCTGTAGTCATGTCAAAAACTTTGTGGTTGGAAGGCAAGGTTATGGTAGCATCAGATTTTTGGGTGAGACAGATGTAAGAGGACTTGATCTCGAGTCCATTATTCAGTTTAACAATCGTGAGGTGATTGTCTATATGGATGATTCAAAGAAACCTCCTGTTGGACAAGGGCTGAATAAGCCTGCTGAGGTAACACTCCTCAACATAAAATGTTTTGACAAAAAAACCGGACAACAGTACACTGAAGGTCCGAAGATTGAGAAATACAAGGAAATGCTCAAGAGAAAGGCTGAGGACCAAGGTGCTGAGTTTGTATCATATGATCCCACTGAAGGAGAGTGGAAGATCAAGGTCAACCACTTCAGTGTTTACAAGCTGGTAGACGAAGACATTTGGATGAATAGTTGA

Protein:

>Am08G007350.1
MQLPTFGQSSTSPFGQNNSAFGQTNSSNNPFAPQPFGSTTPFGSQTGSSIFGGTSTGVFGAAQTSSPFGASSSPAFGSSMPAFGSSSTPAFGSSSSSFGGSTAFGQKPAFEGFGSTPTQTSPFGSATQPSQPAFGSSIFGSSTPFGAPSQPAFGSTGTPAFGATSTPAFGATSTPAFGATSTPAFGSTSSPAFGSTGNAFGGGGAFGASSNPMFGTSSTSAFGASSSPAFGASSTPAFSFGSTQAFGQYSSAFGSSSPFGSTTSAFGGQSSAFGSQTPTAAFGNTGIGQSGFGGQRGGSRVASYSATAEADSGTSGQSAKLESISAMPVYKDKSHEELRWEDYQLGDKGGPLPSAQSTGLSGFGSSTTQTNAFSPSTPGFGQSSSNPFSSTTPNTNPFGQSSANPFSSTTPNPNPFGQSSANPFSSTTPNPNPFAPKTSTFSSGFGTSAPAFSSSAFGSSTSAAAPSIFGSSTSPFGANSSSQAFGSSTSLFNTAAQGTSSPFGSSIFGNTQPSQLFSSSAPTIAQSGSTFGQNPSPFGQTNTFSQSSLFSSPSSGVAGNIFSSSASLTSNTLTGFGQTAPSISTPFQSTQPAQSNGAFSFSNFGQTQPAGASSFGGTPAMFGQNNFGLQSSTQSSMTVQAAPITNPFGTLPALPQMSIGRVGTTPSVQYGISSMPAQDKPATVSISSLLTSRHLSQRRIKFPLRKYKNEGPKVPFFSDDEGTPTTPKADALFIPRENPRALVICPMEQWPGRASEKASYLKARFISVNENETASENGVVKEQVQPTPTKQASNSNGSTEDHSLQKADMYKTLSGHRAGEAAIVYEHGADVEALMPKLRRSDYFTLPRIHELAAKERAEPGFCSHVKNFVVGRQGYGSIRFLGETDVRGLDLESIIQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGQQYTEGPKIEKYKEMLKRKAEDQGAEFVSYDPTEGEWKIKVNHFSVYKLVDEDIWMNS*

Promoter(3k):

>AM08G007350.1
AGGTTAGATTGAGGAAGGAATTAGGAATGATATCGCATCAAAAGGAAAGCGGAAAAGTGAAATTTTAAAATGGGCAGAAGCAGGCGCACGAAGCGGGCCTCATGGCGCACGGTCCGGGCCCCTTCCTCTGTACTTTTGTTGAAAACTCTGTTTTTCTCAAAACCGCTAATCCGTTCGATCCGATTTCTTTGCCGATCAATCCTTTACTCAATTCCGCCTAATAACGGGACGTCAAACCATTAATAAGTAATACCAAACATCAATTCCAACAAAGTCCCCATGGCACACTTAGCATGTAATCTCATGGATCATCCCAATTTTCGTCCACACACAAGCATTATCAGAAATTCTGAACCATCGATATGTATGGGCCAACAAAATATAGTAACAACCACCAACGAGTTACGGAACTCACCATCATGGGCTCATGCATTACACATTCACTGCCCAATCATATAGTCATACTCCTAGCTGTTTCTCATTCATACTCAACAAACACATGGCGGAAATTAAAACAACGCAATTAGAAAACTCATTAACATATATATCTCAATCGTTGAATTCCAAACACAATTAATCTCATACATTGTGCTAAAATCAGAACAACATTAATTAGCACATACTTACCCTATTGACACATAGCCAATAGTATACTGAAACGAATACCTCGTCTTGACTTTAGTCGCCTAGAATCTTACCGCCGCAGTGGAGACTTGGGTAAACAAAAAGGGTAAGGAACTATTACCCTACAATACCTATTACTTCTACTTATCCTTACTAGCCACTACACTAGCATACTCGTCCCACATTTCACCCCTTACGGGTAGTAAACTGTGGAACATTTCCTTTCGGTTTTCTTAGAAACACCGCTAGTGTTTTGGGTTAGACTCGGGCATAACGCTGTTCATGACTGACTCACAAATGGGTAAGGTTTTTATAAAATTTTTGCTTGAAAACATTTGGAAATAAAACAATTTTCTCACATACCCATAGGAGTCGATCTCATCGACTAACCCAAAATACTAGTGAGGGTGGGTCTTCAAACTTCATGAATCGGTCTTTGGAACTCAACCCTAAAACACGGTAGTCTTACTCTATGTACGTACATTTTGGAAACCTATAAGTGAGACGACTTCTCCAACACTAACTATTCTTCTCAACCTGACTTGACTGAGCTCTGTAACTTACATCCTATTAAGGTCTCAATTACTCAAATACTAGGGTATTAAGAACTCCGGGTAGTATGGATCTTACTAGTGAGACGTAAAAACTCCCCTAGGAAGGTAAGGCTCACTAGGAGTCCATGAATCTTCCTTGATCATCGACTAGTCTAGTTGTAACAATTACTTTCGGATTAAGTGTGGAATTGGAATATTGGTGGCACCAAAGAAATTTTGAAAATGAAAAGATTCTTTTAAGGAATCAAACAGCTGCACACCTAGTGCTTCCGTATTGATTCAGAAAACAGGTTCAGATAATACTTTTGAACATTCCCTTGGTCCTTCATCTTTCCGAATTCCATAAACATCCAAGTATAATTGCTACGGTTGTCGTAATCAACCAAACTCAGAACGGGTTCTAATTCTAGGACAACAAAACCTTCAACACTTAGGTAAATTGAACTTCGTTCTCCCTTGGCATACAAGTGGGGTGCCTAATAGTCTAAGGCCTTTGAAGACTCTACTGATTCCTGAAAGGCTATAACTACTAATAACCATTTCCCAGAGGTAGATCTTTTGGGAACTACAAGGAATATTGTCTTAATCCGGGGCCTAGGTTTCGTGTTACTGTTTTGGTATTGATTGGCATTTTCATATCGGAAATTCGAGTCAAAAACCGTATTTGCAGAGTTATGTATTGTTATGTTTCGAAACCATTGCTTGATTGATACTGATTGTTGTTGTGGTTGTTGTTTGGACTGATAGTGATACTGGGGCTTAGTGTTGTTAAGTTAGAAGTTGGTTGGATTGAATTTGGATTGAAATAAAGTTGGTTAAAATGATTGGGACTGCTTTTGAAACGATTCTTATGCAGAAAGAAGGACCATAATCGATTTTGATGCTTGATTATTGGTTGTGAAGACTTCATAATCGATTGTTGTCTTGTGAAAATCAATTATGGAGCCATCAAAATCGAATATCAGTGACAAATTTCCACAAAAACTCATTTTTAACCCCGGACCGTGTGTGATATGGCACGGGCCGTGTGTAATCTTCTATCCCCATTTTCAAAATCTATCCAAAGTCACTCCAATTGATTCCTAACCAATTCTAATCCCTTCCCCAATCTTATATAATGAAGAAATAAATATAACCCCTTGAAAACACTTGTGTTGGATTGAATTGTGAGAATTTTCTAAGTTATGTGATATGATTGGTTAAATCAAAGTAAATAAGTGTTGATTTCTGGTATGCATTGGTTAAACGTTGTTTTACTCATGTTTCAATGATCAATGGTATAATTTCATGACATGTGGCTATGGTATTGAAACGGTTTGATTAGTTATGTACCGAGTGAGGAAAAACTAATGACATGATGAAGGAATGGACCTTGTGTTCATTAAAGATAAGGTTATTACCCCAAGTAAGGAACAATGACAATAATGACATGTGATATTTATATCAAAGAAAGGGTGACGACCCAAGAGATGAGCATACTAGGGTAGGGAAGTCATGAGCCTGAACCCTAGGCCCCGTTCATGTTTGCTCGCTAGCTCAAGGTTTGCGGATCGGGTTCACCGGGAATTTAGTAAATGGTTAACGGTGTTGTGCTAAGTCACGAAAAGTTTGCACGTAGCTATCCAAATCGGAGTTACGAGTTAAATGAAGCATAATGAACCGCGAGTGTAGTAAGGGGTCTCGGTAGAACTCACTTAGATGTTTATCTCACACTTTATATGTTGTGGTTTTTATAGAGAGCCAGGGAAAAACAAAGGTCAAGAAGCACAGGTAGCTAGTGCGTGATGGAGGCCATGGAGATCATGGATTTTAGTTATTGCTT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04096.17	Nucleoporin2	841	987	2.90E-43

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006913	nucleocytoplasmic transport	Biological Process
GO:0016020	membrane	Cellular Component
GO:0034504	protein localization to nucleus	Biological Process
GO:0015031	protein transport	Biological Process
GO:0072594	establishment of protein localization to organelle	Biological Process

InterPro

InterPro term	Description
IPR037665	Nucleoporin peptidase S59-like
IPR036903	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily
IPR007230	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain

trEMBL

trEMBL term	Description
A0A1S2XY71	_

SwissProt

SwissProt term	Description
NU98A_ARATH	Nuclear pore complex protein NUP98A

KEGG

KO	Description	Enzyme
K14297	nuclear pore complex protein Nup98-Nup96

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G10390	Nucleoporin autopeptidase
Medicago sativa L.	MsG0180004377.01.T01	_
Oryza sativa L.	LOC_Os12g06890.1	OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
Cucumis sativus L.	Csa018208	_
Glycyrrhiza uralensis Fisch.	Glyur000226s00010847.2	_
Codonopsis lanceolata	Cl_chr03_12330T	_
Arachis hypogaea L.	AH19G23090.1	Nuclear pore complex protein NUP98A like

Expression pattern