Gene detail

Detail information of Am08G006590.1 Annotation

Gene ID	Annotation
Am08G006590.1	chromatin remodeling 31

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G006590.1	mRNA	Chr08	73916681	73919644	-

Sequences

CDS:

>Am08G006590.1
ATGGATGAGTTGTGGGAAGAATTGAATATATCCCTTAAAGTAGAACAAATTGATTCCCTTATAAGGACAAATGAAGCTATGAGAAGTCCAACCTCCCTTTGTGAACATAATGATTACTTACATCTAGACGAGGAGATTGGGTGGTATTGCAAAATGTGTGGTTTTGTTAAGACTGAGATCAAAAATATCTCGCCACCAGTGGTAGATAGATTTCCATATGAAGGTTCAGGGAGTAGGGTATCATTTAGTGGAGTAAAAGGCTCACCACCCTTTGATGAATCTCAGTTCAATGATTACGATGGTGATTCAGAGGCATTTTTGTCTCACAAAGAAGGCACAGTTTGGGACTTCATTCCTGATGTCAAACAAAGCTTATATCCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAAAAATTTGGCAGGAAACATTGACCTTAACAAGTTGAAGAGTGAGGGTGAAGGAGGGTGCATTATTTGTCATTATCCTGGAACTGGAAAGACAAGATTGACCATAATGTTTCTCAAAACATATTTGAAAGTGTTCGATAAATGCTTCCCTGTTATTGTTGCTCCTCCTAGTTTATTGCCTACGTGGGAAGATGAGTTCAAAAAATGGGACATAGGAGTTCCATTCCACAATTTGAACAATCCTGAGTTATCTGGTAAGGAGCATCATGATGTTGTTAACCCGGCGAATAATCCACAACTTGATACAGAAGGCCGGCGAATGGTGAAATTGTGTTCGTGGTTGGAACGGAAGAGCATTTTAGGAATCAGCTACAATTTGTATGAGCAACTTGCAGGATCCAAAACTAGAAAGAAAAATGGAAAGTTGAGGAAAGATGATCCAAAGATGAGTCTTATGGGAAGGGTTCTGTGCGAAGTTCCTGGTTTGTTAGTTCTAGACGAAGGACATAAACCTCGAAATGAAAATAGTTGTATTTGGAAGGCTCTGGTTGAACAAGTTCAAACCAAGAAACGGATTATCCTTTCAGGTACTCCTTTTCAGAACAATTTTTTTGAACTGTATAACACTCTCACCTTAGTTAAACCATCGTTTCCCAAAACAATTCCACGGGGACTCAAGAAGTTCTGCCGGAATAGACAAAGGCAGAAAAATAAATCATCTGAAGAATTGTCTTGGGAGCCTATTTCTTCAGGAAATCTCGCTGATGATAAGATAAGCCAGTTGAAATCGCAAATGGACTCGTTTGTTCATGTTCACTCAGGAAGCATTCTGAAAAAAAATCTTCCTGGATTGAGAAAATGTGTGCTCACTTTGAAGCCAGACAGTTTCCAGAAGGAAATTCTAGACAGCATTGAAAGTTCTCAAAAGTGGGTCATGTTTGAACACAAGGTGACATTAGCATCTGTCCATCCATCCCTTTTCCTTCGCTGCAATGATCTTACGAAAAAGGAAGAATCTGTTCTCGACAAGGAGCGGTTAGAAGAGCTTCGATTGGATCCACGTGGAGGTGTCAAAACCAGATTTCTAGTGTACTTTGTCAGTCTGTGTGATGAAGTCAATGAGAAAGTTCTCGTGTTTAGCCAATTCATTAAGCCTCTGCACTTAATTATAAAGCAATTGAAGTCTGAATTCGATTGGTCTGTAGGGAAGGAAGTGCTGTACATGTCTGGGAACGTCGACCCAGATACTAAGCAGTCCAGAATTGATACTTTCAATGATCCAAATGGTGAAGCAAAGATAATGCTTGCATCTACAAAAGCATGTAATGAGGGAATAAGCTTAGTTGGAGCTTCAAGGGTAGTGCTTTTAGATGTTGTTTGGAACCCTTCAGTTGAAAGGCAAGCTATTAGCCGAGCATATCGACTTGGCCAAAAGAAAATTGTGTATACTTATCACCTCATCACTGAAGGGACTGCTGAATTGATGAAATATCGTAAGCAAGGTGAAAAGGACCGATTATCCGAACTGGTTTTCTCAGATAAAGATGCAGTGGAAAATGGCGTGTCAAAGAGTTGTGCAGTCAATTTTGAGGACCGAGTTCTTGATGAGATGATTAACCATGAAAAACTGAAGGACATGTTTGGAGAACGTGTTGTAGAGCCTATGAACTGGTAA

Protein:

Promoter(3k):

>AM08G006590.1
GGAGTTCAGTTGGGAGGTAAGCAAAGTCTGGTTTCAATTTGTTCCATCGCCGGAGATCGAACCCGGGTATTAGTGGAGTCCGCCCCTTAAAATGAAGTGCATTAACCACTTGCACTCAAACTTGGAGTTAAATAGGTTTCTAATCTATTTGCTAGTTGAGTGAAAAAACCAATGTTTTTAAAACAGGACCGGAGATTGAACCGGAGAGACCTCCGGGTCATGACTCAATTGGTTCACTCGGTTCAACCATGGTTGAACCGGATGAGTAATAATTAAATAAAAAATAAAAAAATATTGAAATTTTGAGAAAGAGTATATTAAAAAAAGCACAAATTGCATTTCGGGCCGTTCAACCTGGGCCAATTGACGGTTCAAAGCGGTTGAACTGCGGTTCAACCCGGTCCAAACCTGTTCTTAGAGGTTCAATTGACCTATGGTTCAAATGGGGTTGAACCAACCGCCCGCGTATCTGGTTCCCGGTTCAACCAGTTGAACCGTCTGTTTCGGTCCGGTTTTTACAACATTGGAAAAAACTCCTTCAAATAAGAAAAGTCAACTGTTGAAAATTTTAATAAGTCTTATCGTAACCCCAATTTATTTATTGAAAAACAACGAATTTATTTATTGAAAAGCAACAAATCTCTATCTCTATAGTACGGGAAAGAAGAAAAAAGAGAAAAATTGTATTAAATCTTGCCACAATTTATTTATTGGAAAACAACAAATCCTCTTAATTAAATCGAAAATCCAAGAAAGGAAAAAATATCAAAAAAGCAATCCACTAAATATTTTGTTTGTTTGTTTGTTTATTTATAGAGTTCTATTCCTCTTCCAGTTTGGCGCCATATTACTGTGTCACTACTCACTAACAACTCCTCTGTAATCTATTTCTGCCTCTTCGCTTTTCTTTCCTCTCTCTTCTCTCACCCTATTTTCCGTTTCTCTATCTTTTTCTCTTCGTTCTCCTTAGCGCACAAGAAAGAGGAACAGAGAGAGAAAAAAAGCGTTTTCTTTCTTTCTCTTTGATTTCTTTTGTGTTGGCGTTGTGGTTTGTGATGCAAGGCGTTTCAAGCAGGACACGTAGCAGGAACGCTACAAGGTTTCAAAGTCTCGATGATATTATACCTTATAAGCGTAGAAAGAAGGTTTTGAAGAATGTTCAGAGGAAAAAGGCTAAGCATGTTGTTGTTGATGTTGAAAAGGGAAATAAGAGTGATGAAGTTGAAGGAAGTGATATGGTTATTGGTAAAGATGGAATCTTTATTGATGATAGCCGTGGTTCAGTACCTGATAAACCTATTATACTAGATTCAGATAGTGATAGTGAGTCTGATGATGATAATAATGATGATCATGATGTTAAGGTTGATGATGGTGATGATTGTAAGGGTTTGTGTTCTTCAAGTGATGAGAAAGGGACTAGTGATGATGATGTTGAAGGGAGTGAAAGTTCTAGCAGTGAAGAAAGTCGTAGTTCTTATGATGATGAAAAGGAAGAGGAGGAGGAGGAGGAGGAGGAGAAAGATGGTGATTCTGAGAATAGACCTTCATCGGTTAACAATGATGAATCTGGTGTGGAAGATCAAGAGGAATTGAATCATGGTGTGGAAGATCAAGATGAATCTGGTGTGGATGATGATCATGATGTTAATCGTGATCTTAATGTTGGTGATGATGATGTTGATGGTGGTGATGATGATTGTAAGGTTTTGTGTTCTTCAAGTGATGAGAAAGGGACTAGTGATGATGATTTTGAAGGGAGTGAAAGTTCTAGCAGTGAAGAGGGTTGTAGTTCTTATGATGATGATGATGATGATGAAAAGGAAGAGGAGGAGGTGGTGGTGAGAAAGGCGAAGAATGAAATCAATGGAATGAGAAGATGTACAAAAGATGGTGTGAATGAGAAAAAACATGAGAAAGTAGAGGAGGGTGATTTTGAGAAGGAGAAGGAGTTGTGGGATGAAATGGATATATCCCTTAGAGAAGAAGAACAAATTGATTCCCTGGTAATCCTCTTTTTTACTAGTTGAAAGTCTATAGAAATATATATTGAGTAAAGTAGAATTTGAGTTTTAGGCTTCACTTTTTAAGAACATTTGAATTTGAAGTTTGCAATGCAACTTTGTTTTTTATTTAATGCACTATAGTGAAGGAGTAGTACTTAGCTGCTTTTGAGTTTTGATATATAAATTGATAAGATGCTTAAACTTTAAGGAGAAATTACTGAGTCATTTTGTGTGCTATAATTTGCAGATTGGTAATATTGGGATAAATGTAGCTACCCCAAAAAAAGGAGGTTGTTATGAGAAAAAAAGTTGCATTGAAAAAGAGGGTTGTTTTGATTCTTCTAAATTTTATGAAGGAGCAGAGAAAAAGGGGGTAAAGAGAATAAAAATAGAAGTGGAAAGTGATGATGATGTTGAAGTAATTGAGAAAAAAACTTGTATTGAAAAGGAGGATTGTTTTGATTCTTCTAAATTGTATGAAGGAGAAGAGAAAAAGGGGGTAAAGAGAGTTAAAATAGAAGTGGAAAGTGATGATGATGTTCAAGTTATGGATTTTACTATGCCTTCTGAAGTTAAAGCTCAGAAGAATAAGAAGAAAAAGGAGTATAGCTTAAGAAGTCGACAGAATGTAGAACCAGTGTTGGAGGAGATAATAGATTCAACTAAAGTCCAGAAGAATCAGAGGAAAAATGCCAATGCCAATGAAAGAAAAGTGCATAAAGTTAGAGGTAATGCATGGAAGGATAGAAAAGATGATGGAGATCATAATGTCAAAAGTGGGAGACCATTTAAGCCTAAGGAGCTACGTTTAATGGAGAAACTCTTTGCTGAATGGGGTGAAGAAAATTCCAAGAAAAAGGATTCAATTGAGCAGAAAGAAAATGATGATGGTGATGTTCATAAGATAGATGCCCAGCAACTGGCTTGTGCGGAGACGATATGGAGCCTTGACGAGAAGTTTGAACCATTGGAAAAATCTGAAGCTGAGAAGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	151	445	1.40E-23
PF00271.34	Helicase_C	506	613	2.40E-13
PF04851.18	ResIII	124	336	4.40E-09

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	CHR31
Transcription Factors Family	SNF2

Gene Ontology

GO term	Description	Category
GO:0080188	gene silencing by siRNA-directed DNA methylation	Biological Process
GO:0140658	ATP-dependent chromatin remodeler activity	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0004386	helicase activity	Molecular Function

InterPro

InterPro term	Description
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR044567	SNF2 domain-containing protein CLSY/DRD1
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0A8B8JV82	_

SwissProt

SwissProt term	Description
CLSY3_ARATH	SNF2 domain-containing protein CLASSY 3

KEGG

KO	Description	Enzyme
K10875	DNA repair and recombination protein RAD54 and RAD54-like protein	[EC: 5.6.2.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G05490	chromatin remodeling 31
Medicago sativa L.	MsG0780037863.01.T01	_
Oryza sativa L.	ChrUn.fgenesh.mRNA.85	expressed protein
Cucumis sativus L.	Csa018513	_
Glycyrrhiza uralensis Fisch.	Glyur000804s00033423.1	_
Codonopsis lanceolata	Cl_chr07_00960T	_
Arachis hypogaea L.	AH16G32730.1	SNF2 domain-containing protein CLASSY 4 like

Expression pattern