Gene detail

Detail information of Am08G006550.1 Annotation

Gene ID	Annotation
Am08G006550.1	myb domain protein 98

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G006550.1	mRNA	Chr08	73600038	73602299	-

Sequences

CDS:

>Am08G006550.1
ATGGAGTTTGATCCAAGTTCTATAGAAAATTTTCCCTACCTTTGTGAGATTTTCTCAAAAACTACTTGCATAAAATCAGAGATCCCTACTATGGTTCCTTTCAAACCAAGCTCCACTCTCTCCCTTGATCCGCCACATGAGACTAGCTTTTTCTACCAAAACAATTACCACCACTCTCAACAACATCCTTTGAATGAGGGCAACCAACACTCAAGTTTTTCTGTGGAGGGTCCTTCTTCTATCAGCCCATTCTATATGATCCCAACTCCTTCATTGGGTAATTCATACAGGACTACAGACACCGTTGGATCAATGGCAGATCTTCTCAGTGCTTGCTACCCCATGGGCTTTTCACCAAACGGTAACAAAATCGAGACCTTGTCGGGCTACATGAGCAATGGTAATAGTTACTTGGATTTTGTCAATAAAAATCCCCTTCAATATAGTTCCATTTCCCAATCTCAAGTAGGTCCTTCCTTACCACCATTATTAGGTTATGATACACATGCATCTATGCAAACGAAGCCTAAGCTTCAAGATGAGCTACGCATTGTTGGGATCAGAAAAAATCCCCAAGACACTGATCTAAGACTCAATGTTGGTGACCAGAAGAAACAAAAAATAGTCCAGAGGAAGAACAGGGTAATTCACCACATTGATACCAATATAATTAAAGGTCAATGGACTGTGGATGAGGACAGGGTTCTTATCGAATTGGTGGACCGCTATGGGCTTAAACAATGGGCCAAAATATCTAAACTTATGAATGGAAGGATTGGGAAACAATGCAGAGAGAGATGGACTAATCACCTTCCGCCGAACATTAGGAAAGACTCATGGAGCGAAGAGGAGGAAAAAATACTAATTGAATCTCACAAGCAAATTGGGAACAAGTGGGCAGAAATTGCAAAGAGATTACCTGGGCGCACTGAGAACACCATCAAGAACCATTGGAATGCCACCAAGAGAAAGCAGAACAGACGCAAAGGTGGTTCAACAGGAACATTGCTTCAAAAGTACATCAAGGAAGTGACTAATGCTAAAGTTGATGCATATGAGATGAAGCCTTCCATGAGAATGATGAATCCTGAGAGTAATCAAGACCACAGTTACCATGGTTTCTCTCATGTTCATTATGAGAGCTTAGGGGATGATTTAAACTCTGGACATTGGGCTACTCAAGAGAATGAAGTAAGTGGTTATGTGCCTGTGATGTTCAATGGAGATGTCGAAATGGCAATTGGGTCTAGTACAATGGATTATAATGTCGAAATGGAGAGATGTTGTAAGAGGTTTCAATGA

Protein:

Promoter(3k):

>AM08G006550.1
CAAACCAAATTATATATTTATAGTTAGGACTTTGAATAAGCTTTCAAACGCCTTTGAGAACACCTCAATCGAGTTCCCGGATCAAAAGTTATTGCGAAAACAAAATCAGTGTATTTTGCTGAAAACTGCAAAGCGTTGCGACGCGAAAAGTTACAGAAAGTTTTGCGTTGCAAAAATAAGGGGAGGTCGCAACGCGAAGGCTCGGTTCGCGACGCGATGAGAGACAAAATTGTGAAAAAAACAGCATTTTGAAAACCTGTTTTGTACCTTTTCGCTTTCCTGACCATCGAAACTTAAAAATAGACATTATAACCAGCAATTCAGTACATATTCCAGCGAAAGCATTAAAATCAACAAATCCATAAAAACATATATATTTACAGAAAAATCGTAAAACGCTATTTTCCCGAAAACGGTTTTCGACTCGAAAATATTTCGAAAGGCAAAACAAGTCATTCAACCAGCAATTTCCAGTAATCCAAAATAATAGGACATAATCCTAATCGTGAGTAAAACTCACCGGTCGTGATGAAAATCATGGAATTGCCGAGACTTCAAAACGCTCCAACACGTAACCGCTCGAACAATCCTGGCTATGGTTCAAACCGCTTCAAACGAAGGCTCCACTCTGTCCAATTTGAATCAGCAACTCAAACACTTTTCTTGCTACTGAATTCCTCTCCGGTCTATGGAATTGACGTCTCTCGAAACCTTGACGACTCATACCCAAAATTTGACGAACCGATATTCCCAGCTCTATGTCTGTTTTCCAGTATCAGTGTACAGATTTGCAACTGGCATAACTAGGTCAATTAGTAACCAAAACCCCTCAAATCAGTGCCCATTGCGTAGAGAAGTTTGTCTAGTTTGTGATGGAGGAAGTTCCAAACGCATGCAACCAGTAATTTGGGAGGTATCACAGAAACAAGGGGACTGGTTCAGTATAGTGGCTGATTCTTAACCGAAACTTGTGGACACAATATCTCCCTCATTTCCAAATGAAATTCGATGGTTCTTGTGCCCATATTAAATCATTTCGTGTCTAGTTTCCAGAGGAATAAAGATCACGTTCATAGGAGTTGTGTACAGGGAGATACGATGTAAACATTGAAGATGACTCATACGGGTTTCACACAGAAATCTTGATGAACTTGTATCTACAGCCCCAACCTTTAAACTCGAATTCAGCAACACAACAACGCTCTAACCGCTACCTTAAACGATCTGAGAACCCATGAGGCTAGTGGAAAGCACTTCAGCAACAGATTATGAGCTTCAATCAACCACATGCAAGCCTCACAACCCTCTTTTGGTCAAGTGGATCTTAACTTGTTAGAAATGGTGATTTGAGTAGGAGAGAATGGTTTGTTGTGTTCTTGGTGTTAGAATGTACAGGAGAGTGAGCTGATTACAATGGTGCAAAGAAGAAGGACATGCATCAAGAATGGAGGAAGCTCCCTCTCCTTCTTCTTCCCCCCTCTCTCACGGCTCACCTCTCTTCTCTCCCCCTATTTTCTGTTTTGCTTCTAAGTTGTTCCAGCTGAAGTGTTAAGTGAAATGGGGAAAGGGGGTCAGCTGGGTTAGGAAATGGGGCTGAGGTTAAGTGGTGGTGAAAAGACCAAACTACCCTTGGCCCATTAAGTCATGGTTAGGTGCTGAAAATCTTCAAGAATTTCACGGTCAACCCTTCGGCTAGATTTCTCGACTACTCTTCATTCGAGTTGCGACTAAATATTTCTTTAAAAAAATTTAATCGTTCTCATATTCCGTAATTCGAATCATTAAATTTTAGGGTTGTTACAATCACCCCAACTTGAAAGATTTTGTCCTCAAAATCGTTCATAACTCATACACCTCGTTGATACAAGCTTCGCCCGAAAATCAACTACTCCGACCCTATGATGGCAGACACTAGTTGTTATGGACAAACAGAATATCTATAATTTGTTGAGAACACAACGTATAGCTTAGGGGATCTATACATCCTGCACTATCCAAGTCAGGAGCTCAGAAGGTTTCGGCTTAGCCGTGGCATGAGTCAGGAGGAAAGGGTGTTTAGAGAGGATTATTTTGAAATCGAACTATGCGGTTTACGAGAGGATTATTTTGAAATCGTTCCCAATGTTTTTAAATCAAAAACCCGCTAAACATTTTAGTGATTCATTATTTTAAATTTCTTGTCAAAGAAATTTGATTCAATTCCTATTCGATTTACTAATTAACGTATTAAATTGACAATTAACCGCAATCTGAGTTCGACACTCGGTCTTACCGATTTTATTACTTGCAACAATCCGGTATACTGGCCGCGATCCTGTCAATAATTTTTGGTAAAGTTCGACATACACTCTAAAAAATTCAGAGCTACTAATGTTCTGAAACATAAAGGATCAAATTGAGAAAAAAATTATAAAAGAGCAAACTAGTATTTTAAATTAAAATAAAGGATCCAAAAGTTATTTTACCTATAAAATGCATGAATCTTTGACCAGAATATAAATACTTTTTTTAGTCTCGAACTATTATACTTACAACAAAATTTAAATATAAAAAGTATAAAAACTAATATTATACGAATAATTAATATGAGTCTTTGTTTTTTTGTTTACAATATGAGTCTTTGTTTAAATAATCATAAAAGAAACATGCATCTCGCGTGTATTGTTAATGCTTCTCCAAAACAATCCCTAAAGTACAAAAAATTTGTAACAGCCTCATTACTGGTTTCATATTTTGAAAAAAAGAAACTTGCCACAAAATGAGAAAATAATATTAAATTAAAAAAATGAATATTGAAATAATTTTCTTACTTGAGTTACTCAAGTGGAAGCTCATTAGTCATAGGAACAATGAACGTGAATCGTTTGATGTTATCGCATCAACGGTTATGTGTTATTTGAGTCTCACAGATAGAGTTCATAAAAGCTCTTGGTTCCTAATTCCCTTTGTGACCAACTCTCAATCTTTCACTCTCCACGGGTATTCTCGGTGTGTTCTACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	225	271	9.10E-32
PF00249.34	Myb_DNA-binding	277	319	9.10E-32
PF13921.9	Myb_DNA-bind_6	228	286	2.80E-23
PF13921.9	Myb_DNA-bind_6	280	324	2.80E-23

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A2Q4M1	_

SwissProt

SwissProt term	Description
MYB98_ARATH	Transcription factor MYB98

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G18770	myb domain protein 98
Medicago sativa L.	MsG0780038186.01.T01	_
Oryza sativa L.	LOC_Os06g06740.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa011215	_
Glycyrrhiza uralensis Fisch.	Glyur000794s00035453.1	_
Codonopsis lanceolata	Cl_chr02_11430T	_
Arachis hypogaea L.	AH16G32370.1	Transcription factor MYB98 like

Expression pattern