Gene detail

Detail information of Am08G006140.1 Annotation

Gene ID	Annotation
Am08G006140.1	expansin B2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G006140.1	mRNA	Chr08	68343166	68345564	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM08G006140.1
ATGCAGCTAGAACGGTGTTCCTACTCTTGGCAACTTCAAGCCTAGCTCGGATGATGGCCTTGTCCATGTTTTCGACGGCTTGTTCTGCAACAAAAGCAAACATTAATATTTGTGTTTAAGAAAAAAACATAATTGCAAGTATGATGACTCAGACTCACCCTTAAAGGATATACATCGGTTCTGTTGGTATTGACCTATCAAGGTCGGAGTATCGATGGTCGGAAGCTCCTCAAGATACTTGACTAGAGCCCCATCCTCAGGAGAAAGCTGAATTAGTTCAACTTCCTTTATAGGGCGTGGGTTTTTGGCCCAGTAGAGGGGGGAATGCGTCTCCCATATGGGAATCCATAAAAGCTTGCTCCCAGCAACAACTCTAACCTGCAAGAACATGGGTTTCCAACCCTTGACAGAAGAATCTAACAAGGAAGAAAATACTGCGACTTGGAAATTTTTTGAGGGAGAACCACTTAATCGGGATGCCCAACTTTAACTGAAAGAAGTAAAAAAAGACAAGAGCAGTGGCTCTGATTCAATATTAATAGAAATGAGCTCGAAATCTTGAATGAAGGCCCAACTATTGGGATGAAGTTGTGAAGGGGTGACATTGAGCCATCTGAGAACCTTTCGCTCAAAGATAGTTAAGGGTCACTCGATACTAATCTTACTAAGCATGATGTCATAAAGGTAGACATAGTCGACCAAGTCGAGGAAGACCTTAGTATGGAAAACCCAATACTCAGGCTGGCAGAAATCGACCCAAACTTTGTGTTCATAGTGGGCATCTCAGAAGATTAGAGCGACCAATCTCCTAAGAGCTCAAATGTCCTCCACTGGGAAGTAACAAGATGCCACATCGACCTTAGAATGAACCCAAGAATAATCAGGGGAAATGCAATTGATGGTGCAATCCATCTTTGGCTTGTGTAGATAAAACTATCTCTCCAAAGAAAGCCAATGGAACCTCGCTACACTTCCCACTCAGAATCCTCCCATACTCTCGCCCAAGTTTAGGTTTTTTGGTCTGTCGCCACCAGCAGGGGTGGAGGAAATTTCCTCTTCAACCAAACCATGAGGACCTACAGATTGAGGGTGGAGAGAACACATCATAGTAGAAAACGAAAAAGAGGAAGAGGACAGAGCCACCATGGCCTAAGAAGGCATGATGATGACGATGGGAATGGGTTCGGGTACCATTTCGAAATGAAACTAAATAAATAGGAGGCAAAGAATAGACTAACCCGAAATAAGCCAAAATCTTGAAACTTGAGGGCTTGAGAGCAACAACTCTGGGATTTTGCATGAACTTGGCAAAAAGACTTAGTGAAATAGTAACGAAGAAGAAAGAAGAGGGCTTAACCCCATTACTTACCTTTCGAACCCTCGGTAAGATCCAAGCGGTTAAAGACCAAAGGGTGCATCGCTTGGTGACACATTCCAACAGTCTCGACTCAATCACCAAATCAACGCGCATGATCGGGTAGAACCGCAAAGGTCACCTCATTTGAACTCTTAGATTCATGCTCGATTTGATGTGAGCAATCACACATAATCCGGTACTTCACTTTGAGACACCCCTACATTAAATGAGGTCTGCAACGAATCTTCCTTGAGACGCACAATAATTCGACTTCGGTAATGGCTCGACTCAGTAATACACAACTAAGATAGTTTCTTTAGAATTCCAATCCCCAATGAATTACAAGTCTAGGGGAACTTTTTTAATGGGCACGACTTGCACCACCGAGCTAAGCCGTCAGGTCCTCATAGAACTCTTAGTTGTAGATCAAATTGACCACCGTTACAATGGTAAGGGATCCGAGCTCTTTGGGAGAAGTCACAACTTATACCTACATGGAAAACGATACTAGAAATGCTAAGTGTGGAAATCAGATTCTAAGCCCTGCCCCGAGTAGGACCCCCTCGAAACCGAGGTACTAAGTCTATGGCAGAAGATGACGATGAATCCTAATTTCGACGTCTATTCCAAAAGGTGCTTAAATTCAACGGTACCATTATCTCCGAAGATCTCGCTACGATTGTATTTTCCGCGAGACTAGGCAATTATTTTGAAATTATCGGAGGCCACTGCAACTAGGGTTCACATCACTGCACGTAGGGTTTTCCGAACAACATTCATATAAATATGGGTTCTTACCTCAGGTTTGCTAACGTATCTGACCTAAAACTCATATTTCTCACTTCTTATTTTCTCTAAATCCCTAAAATGACTTAGGCATCAGATCGTCTTTACAGGGACACCTCCCGACATGGAGACTTGAAGTCGTCAACCACCTCGTGCAAAGGAGAGCTACCGTCGTGCAATTTCAAGCATTAGCAAATGTGTTTTCCAACTATATTAGAAAAGTTTATATATTAATTGTAGCTTATCTTTAAAATTAATAATTGTGACAAAAGGAATCCCTTACAAAGCCCCCGAAAACATTCTAGAGACAATATAAATAACTAACTTGCAATAGTCAAATAAAAAGAGACAAAAACAAAATTTGTCATTGCATAGGAATTGTAGCCTACAAATTTCTGGAACAATTTCTTGATTTGCTGAAATTTCGATGACTTTTTTTTTACAATGAAATTTCTGTGACTTACTGTATATATCATATCAATTTTAATTTAATAACCTATATATGATCAATTTCCGTATTATAAGGCTATTTACAACAGGCTTTATTTCCTTGTCAAGAAAAAAAGATTGTTTACCTTGACAATAAACACGTGAAAGAAATCTCTTGTACATCATATTCAAACATCTCAATTGTCGTGTTCTATGAAGAAAGCAAAACTCAAAATTCTCTCTCAACGCTAATTAAGCATATCTTATTGCCGTCCTGGAATATATTTACTTGTGTTAGATAACAAAATATGCACGTCCCACATTAAAATTCTCTATAAATACCACACTAGCCATAGAGTATTCCCCACACCAAATAACTACCAACTGCCTATAAGGTACTAACAAAATCCCAGTGGTGTTGTGATAAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01357.24	Expansin_C	178	261	1.80E-28
PF03330.21	DPBB_1	86	165	1.40E-15

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0019953	sexual reproduction	Biological Process
GO:0005576	extracellular region	Cellular Component
GO:0019901	protein kinase binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0009653	anatomical structure morphogenesis	Biological Process

InterPro

InterPro term	Description
IPR009009	RlpA-like protein, double-psi beta-barrel domain
IPR036908	RlpA-like domain superfamily
IPR005795	Major pollen allergen Lol pI
IPR007112	Expansin/pollen allergen, DPBB domain
IPR007118	Expansin/Lol pI
IPR036749	Expansin, cellulose-binding-like domain superfamily
IPR007117	Expansin, cellulose-binding-like domain

trEMBL

trEMBL term	Description
A0A445I205	_

SwissProt

SwissProt term	Description
EXPB2_ARATH	Putative expansin-B2

KEGG

KO	Description	Enzyme
K20628	expansin

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G65680	expansin B2
Medicago sativa L.	MsG0780038015.01.T01	_
Oryza sativa L.	LOC_Os04g46630.1	expansin precursor, putative, expressed
Cucumis sativus L.	Csa000393	_
Glycyrrhiza uralensis Fisch.	Glyur002617s00040165.1	_
Codonopsis lanceolata	Cl_chr07_02940T	_
Arachis hypogaea L.	AH16G33640.1	Putative expansin-B2 like

Expression pattern