Gene detail

Detail information of Am08G005580.1 Annotation

Gene ID	Annotation
Am08G005580.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G005580.1	mRNA	Chr08	54913408	54925497	-

Sequences

CDS:

>Am08G005580.1
ATGACAACGTCGCTTTCAGAGCTTGACGATGATATTGTGCGCAGCATGTCCATCGGAGCTGTTTTCTCCGACTTTGTTGGGAAGATAAATTCGCTTGATTTTCACCGTAAGGATGATTTGCTTGTCACAGCTAGTGAGGATGACTCGGTGCGACTCTACGACATTGCTAATGCTAAGTTGTTGAAGACCACTTATCATAAGAAACATGGTACTGATCAAATATGCTTTACTCATCACCCGAGTTCTGTTATATGCTCTTCAAGGTACAATTTGGAGTCTACTGGAGAATCGTTGCGGTATTTATCAATGTATGATAACCGTTGCCTACGGTACTTCAAAGGTCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCGATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCCTGCCAGGGAATCTTACGTTTACGTGGTAGACCTGCCGTTGCCTATGACCAGCAAGGCTTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAGTTGTTCGATTCACGTTCTTATGACAAGGGTCCCTTTGACACCTTTTTAGTTGGTGGTGATACGGCTGAGGTTTGTGATATCAAATTCAGCAATGATGGAAAATCAATGCTTCTGACTACTACTAATAACAATATATATGTTCTTGATGCATATGGAGGAGATAAGCGCTGTGGGTTTAGTTTGGAACCATCTCCTGGTGCCACAATAGAAGCTACATTCACCCCAGATGGGAAGTATGTATTGGCAGGCTCGGGAGGAGGGACCATGCATGCTTGGAGTATTAGAATGAAAAATGAGGTAGCATGTTGGAACAGCCATATTGGCGTGCCTTCGTGCTTGAAGTGGGCCCCTCGCCGGGCAATGTTTGCGGCAGCATCAACTGTTCTCACATTTTGGATAGCCAATAACGATTCACAGCCAAAAGTTGAGTATGGTGGCACTGGCACAAACTCTGTAACTGGAGCTCCGATGCAACAACTTTTCCGTTGA

Protein:

Promoter(3k):

>AM08G005580.1
AAGGAAAATAATATTTGTTGCATGTTAGCCTTAGGCGCCTAGTGCCTGGGCGCTGTGTTGCTGTGCTGGGCGCCTAGCGCCAGTGCGCTGTTGTTTCCCTGGGCGCCATGCGCCTGTGCGCTGTTGCGCGTGTTGTTCCCCTGGGCGCCTAGCGCCTGTGCGCTGTTGCGCGTGTTGCTCCTGGGCGCCAGCGCCCATGCGCCTGTGCGTGTTGCCTCTCCTGGGCGCCAAGCGCCCATGCGCCAAGCGCTGTGTTGCCCCTGGGCGCCCAGCGCCCATGCGCCAGTTTCCAGAATGTCTAAACATTTTTCCTAAATTGTTTTTAATGTAACTTTTGACTCGGTTATCCAAATTCAACGGTTCAAAATGCGTTTTGAAGCTAATTTCAGTGCCTATCAAATAGTCTCAATTTTATGCAAAAATAAATTATTTTACTGGTGTTTCTGGGCTGATGATGTTCAAGTGTCTAAATGACTGTTTTCCTCCGTTTTCCCTATGTCATGTCAATGTTCTAAGTTGGTCTATTTGATTTGGTGTTGGTGTGAGTGGTGAGCTGAATTGGTGAGTGTGATGAGGTGAGATTGGTGAGCAGAGGCTTCGGCCTAATTTTAATTTGGTGAGTTAATTAATGCACTATGGTGAGATTAGAATTTTGAATGGTGAATTGATTGATTTGTGGTGTGTTGTGATGCATTCTCCATAACACCTCATGAAGCATGTGCATTATTGGTGAGCAGAGGCTACGGCCTAATTTTATTTGGTGAGCAGAGGCTACGGCCTATTTGTAATTGGTGACGGATCCGACATGCATGTACCCGTGGCGTTTGGGTTTGCATTACATGCATAAATCATATATTGTATAGTGCTGTTTGAAATGAGAATACTGATTTGATTTTCCCCATTGTTGTGAATTGGTGTGCCTGGTTTCCTTTTTCCTATGCATTGCTTAATTTCCCATATGTTATTAATTATGAAAAGAGACTCACCCTACTGCCTTTATGTTGCTTCTTATGTCGGCAACGTGCAGGTAATAACGAGTGAAGGATTCCTTTATGCCTTCGTCTGGTAGGAAGTGTCACGCTCTGATACGTAGCACCAGGGGGGGTGTCCTATGTTTATGCATTATTCTTCCTAACTGTTAGATTTGATTGGAGATGTATTGGTTTTAAATTTTAGAACTCATATTTATTCCGCTGCTGATGGTGATTGGTTTTAGTTGATTGCGAACTAAACATTTTTCTCATGGTGTTATGTATCTTGTTATTTATGAAGTAAATGTAGCACTCGCTTGAATTGCTTTCAAAAAAAAAAAAAAAAGACTCTGATTTTATTTAAAAGTAGAGTTATTAGAAAAGGGGTGTTACAGCAGACATCAGGGTAGATTGTCCTTTGGGATCTACGGTTCACCCCAAGACTTGTTACATTTTGGGTAGGCCTCATCTTAAGCGATAACTATTATTTTGATGACTTCGGTACGATGCAGCTATAGGAATAGGAGCTTTTGTGTCTAGTTTGGTCTATTGTGAAATAGAAATTTTGTAACATCATGTAGCTGTCTTTCTTTTGAAACGTAGTGACAAGGTGGTATTTATAAGATGAAGGCTTTGGTTGCTATATTCTGGACATTTAATTCACGATTATGCAGATTTATTTTGTGTATGGAATGTTCGAAAAACAGAGGAGACTCTGCTGAAATTTTTGTAGATATTTTGTAACCTTAAAAGTGTGTTAGGCTTTCCAAACTTATGACTTTTTGGTCTTAGCTTGTGCGCCAGTCATGGCCTAACGGTGGGTCGTGACATTTTTCACCCTAACCCCCTTCTTTTTTTGGAAGACAAATGTTTCCCCAAGAGACCCAACACACATTCCTTCCTTTATTACTACCACCCCATAAAAAATTTCTTTGGATCTTGATCAATTCATGAATATTAAATTAAAAAGAGCCTTATAGAAAGAAAAAAGGTATAGGTGTAGGCTACTAAATACATAATTTATAAGAGCCACTCCACCTCTAATAGACAAGTGACGACCACTCAATCATGAAAGTCTTTTTCGCATCATATGTATCAGAGGCTTCCAAGTACTTCTCCTTCTTGGATTGGCTCCAACTGAGATTCCCAAGAACCTAAAAGGCAAAGAAGTAATACAACAAGAGAGGAAAATAGAGGCCACATTCATAAAGTCTTCCTTCAAGTTGAAACCTATCAGATTACTCTTGGAAAAATTAACTCGAAGAATCGAAACTAGCTCAAAACTTCTTAAAATGGTTTTGATTCTCCAAAGATTCTCCCAATTTCTTTTCCCCATTAGAATAGTGTCATCCACAAATTGTAAAAGGGAGTATTGCTGATTGTTGAAAACCTTAAACAATTCAAAACTACCAATTTGAACTATTTTTTTAACCATCCTTACAAGACCTTCAACGACTATGAGAAAAATAAAAGGTGCAAGAGGATCACCTTGTCTTAATTCCTTATGTATCTTACGATCTTCTGTAGGGCTACAATCAATTCACTAAAACCGACCTAAAGAAAATACATGCTTTCATCCATCTTATCCACTTCAAATCAAACCACATAGGATCACCGGCCATGTATTCTAAGAAACTCCATGAAATGGAATTGAGAGAAATGAGGGATTCGTTCTATTTTCTCCTAATTTGCTGATTGATCACTCAAATGCTATTAATTATTTTCCCTTCTAAATTAATTTACTCCCATGTTTCACCCTCCGTTGGCGAGCTAAGGGATACCGAAGGAGTGCACCAAATAAGTGCAAGAAGGAGGACCCGAGTTCAAACCCGAGAAACTAATATTTCCCCCGCAAAACATTGCCTATAAAGAAACCCTCCGTTCCATTCTACTAATGGATCCCAAAATTAATCAATCTTTGGAACCAAACACACCCTTCAAATAATAATAAGAGTAGTAGGAGAGGAGTAAAAGGAGTGTGAAAGAGAAGGCGGGTTGTTTCCTTCTCTTTTCTGTTCGGCGAGTGAGG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	107	144	2.50E-14

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD
Epigenetic Regulators	SWDB1

Gene Ontology

GO term	Description	Category
GO:0003682	chromatin binding	Molecular Function
GO:0048506	regulation of timing of meristematic phase transition	Biological Process
GO:0016757	glycosyltransferase activity	Molecular Function
GO:0048586	regulation of long-day photoperiodism, flowering	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR001680	WD40 repeat
IPR037867	COMPASS component Swd2/WDR82

trEMBL

trEMBL term	Description
A0A8B8L5C0	_

SwissProt

SwissProt term	Description
APRF1_ARATH	Protein ANTHESIS POMOTING FACTOR 1

KEGG

KO	Description	Enzyme
K14962	COMPASS component SWD2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G14530	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0180003978.01.T01	_
Oryza sativa L.	LOC_Os05g46570.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa009238	_
Glycyrrhiza uralensis Fisch.	Glyur001653s00028826.1	_
Codonopsis lanceolata	Cl_chr05_03320T	_
Arachis hypogaea L.	AH16G32220.1	Putative uncharacterized protein like

Expression pattern