Gene detail

Detail information of Am08G004210.1 Annotation

Gene ID	Annotation
Am08G004210.1	glutamate receptor 2.9

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G004210.1	mRNA	Chr08	33142347	33147302	-

Sequences

CDS:

>Am08G004210.1
ATGGAAAGTAGTTCTTCCCTTCCACTCATCATCTGCTTCTTTGTCCTGCACCTGTTAGCATTGTCAAAGGTGCTACTAGCTAATGAAATAAGTGGCCACTGCTTAGTTGCTCCAAGTCCCAATGTGACCATAGGTGCTGTGCTTGATTTGGTTTCACTAATGGGAAAACAGCAAAAGATAGCAATGGAAATTGCAGTCCAAGAGTTCAACAACTTGAGTTGCTTCAAGCTGGATTTGCAAATAAAAAATTCCAGGGGGAATTCAGCTCAAGTGATTTCAAGTGCTATGGATCTCGCGAAGAGCAACAAAGTACTGGCAATTATTGGAACAATAACACATAGCGAAGCAGCTCTGGCAAGTGAATTTAATGACTCCACAAAGAACATTCCTATGTTGTCTCTAATTTCACCTGCAGCCAGAGCAGAATTATTATCTCCTGGATTACCACACTTCATCCAAGTGGGAGATGATATCACCCTTCACATGCAATGCATTGCAGCCATTGTAGGAAAATTCAAATGGCGAAAGGTGACAGCAATTTATGAACTTAATAATGGGTTTTCCTCTGATCCAGATAAACTGCTTGGCCTCTCATATTCTCTTAGACTTGTTGGTTCTGAGATTGTTAATCATTTAGCTTTTCCTTCATTATCCACTCTTTCAGACCCAAAATCTACGATTGAAAATGAGCTTAACAAGCTGAAAAGGAAGAGCAATAGAGTCTTTTTGATTGTGCAGTCTTCCTTAGAGCTGGCTAACATGCTTTGTGAGAAAGCAAAGCAAATGGGTTTGATGGAAAAAGATTCAGTGTGGGTTATCCCAGATGGGGTTGCTGGTCTTCTTGATGGAGTCAATACGTCTGTTATCCTCAACATGCAAGGTGTTTTGGGATTTAAAACACACTTCATGGAAATGAATGAGGAGTTTAGAACATTCAAATTCAAATTTCGGAGAAGGTTTGAACTAGAATACCCAGAAGAAGAGACCATTAACCCAAGTATCTTTGCACTTCAAGCCTATGATGCAACATGGGCTATTGCTGAGGCTGCAAGTAAATCACAAGGAAAGTTCAGCCTGAAAGAATTCTCAGAAAAGATTACATCTAGAAAACTTGACAGAGGCCTAAGTGGGAAGACTAGCTCCAAGGATGGACAATTACTTCAATCACCAACCTTTGATATAATTAATGTGATAGGGAGAAGTTATAGAGAAATGGTGTTCTGGTCTCCAGCACTTGGTTTTTCCAAGAACATTGATAGCCATCAGGTGATGGATTTAGGAGTTTTAAAAACAGTTTATTGGCCTGGAGGCTTACAATCAACTCCTAAGGGATGGGCTCACAGTAGTAGTGAGGAAATATCATTGAAAATAGGAGTACCTGCCAATGGTGCTTTTACCCAGTTTGTGAATGTGACATATGATCAGAGCAAGAATGAAACTTCCTTCACTGGTTTCTCAATCAGAGTCTTTGAAGCAGCTGTTGAACATTTACCTTATGATTTACAATACAAGTATGTTTCCTTCAATGGCTCCTACGATGAAATGGTTGATCAAGTCTATAATAAGACATGGGGTGCTGCTGTTGGTGACACATCAATAATGGCATATAGATATCATTTAGTTGACTTCTCACAACCTTATCTTGAATCTGGCCTCCATATGGTGGTAACTACGAAACCAGCTAAATCAAAAGAAACATGGATGTTTTTGGATGCCTTTACAAGAGAGATGTGGTTAACCATGGCAGCTATGCACATTTTTGTGGGATTTGTTATTTGGTTGATTGAAAGGGAATCTAATGCAGATCTAAAGGGATTGGGGTCCATGCTTTGGTTTTTAGTCACAGTTATATTTTATGCACACAGAGAACCAATAAGAAAGCCCTTGGCTCGAGTTGTGCTGGGACCATGGTTATTTGTTATCTTTATTGTGACAACTAGTTTCACAGCAAGTTTGACAACCATGATGACTATGTCACACATAGAGCCATCTGTGTTAGATATCCAAACCCTTCAAAAAAGAAATTCCCCAGTTGGTTGTGATAAAAATTCATTTATTGTGAAGTACTTGACTGAGGTACTACAATTCAAGCGTGAGAACATTAAGGAAATAAATTCCATCAATAATTACCCTGCTGCTTTTGAGAACAAGTCTATAGAAGCAGCTTTCTTTGTTGTGCCTCATGCTAATGTCTTTCTAGCAAAGTACTCATGTAAGGGCCTCATCAAAGCAGGGAACACATTCAGACTTGGTGGCTTTGGTTTTGTGGGTTTCTCTCCTCTCTCATTGTCAATAATTTATGACATTTTTGGTAGAAGGGAAAATTGGGGTACTTGA

Protein:

Promoter(3k):

>AM08G004210.1
AAAGCACCCAGTGACGAAAAGGATGATCCTTGTTGGGGAGCTCTTCCAATTTGATTTAGACTCTATGGTACTATACTACTCTTTCCTCTTTATATTGATTATGCATTTTTCTCAACATTAAGACCTCTTACTTCGCTTATTATTGGCTATTATCATTTTTACTCTCCAAAGGAGTAGCTTAGTGGTATTGGTTGGGACACCGAAACAGTGCTAAGTAAGAGATATAGAGTTCAATATCCATGCACCTATCAATTTCTCTCCCCTAACAAAATAACCACTAATATTTGCCTATAAAAAAAATAATCAATTGATCATTTGTTCATTATTTCATTTGTGTAATGCAGCAATATTTGCTTGAATTCATCTGAAATAGTTTTACTACTGATTGCAGAAATGGTCAGTGATTGGAAAGCTTCCTTATCGCATAAAAACCACATTAGCTGGATTTTGGGATGGATGGCTATACTTCACATCAGGACAAAGAGACAGAGGACCGGATAACCCACAACCTAGAAAGGTTGTTGGGGAGATGTGGAGAACGAAATTAAGTTTGCCATAGTTAGTGATTTTCAAGGGGCATCTTATCAATTTTTCTCCAAATTTTGGGTCACGATTCAAATTATTAATTTTCCTTTTCTGTTGCTTCAATGTTCTGATTAAGCAATTGTTCATTAAATTTTGTATACTTTGTGTACAGATATGATTTAATAGATATTGGAGCTTGCATTATGTGTTTGTCACACCTTTTTAGCATCTACCTGTGGAAACATGAAACTGGACCTAAGGTAATCCAGACAATTGCTTCAGATATTTACACAACTAAATTCGGATTTGTTATTCTGGTTGCAATGGGGGATTTAATACTCAAATTAGAATCAAGCTGCAAAACTCAAGAATGAATAGACACTGTTTACTTGATTAATTTTTCTCCATTCATTGACAACAGAATCCTACAGCAGTCAAATTGAATATGCCATTGCTTGCTAGAGTGCTTGTTCACATGTTCAGCGACTTAAAGCCTAGAACCGTCACTGTAGGTATCATCTTGGATCTGGGTATGGATCATTTCCTTCCCATCCTCTTCATCACCCTCTTTGATGAAGAAGAATATGAAACTTTCAAGAAATTGAGAATATTATAGAATTTTCTATAAACCCCAATAGATGAAGATATGATAACGAGGGACCTTAAGATCTCTAGATCCTTCTAGCCATATGAATTAAATATTCATATCTCTAGATATTACTTGTAATAAACTCCTCTAGATCCTTCTATTTTGTAATGGAAGACCCTACAAGAGTAGTATAAATAGGGCTCTTCACCAGCATTTTGACATCAAGCAATAACAACTTTTCTTGAACAATTAAAGAGTTCTCTCTTTCTCTACCCTTCATGTTGTCCCTGAGCCACTACTCATCCTCTCTGCCACTTTCCTCTGTTCTTTCTTTCTTTCTTTCTTACCCTTCCCCTATCTATTCTCTCTCATCTCCCCTTTTGTATTTTGCTGTCGATCCTCTCATTCCCTCCGTCCTACCCATTAAGAAGATAAACTAGTGTAGGAAAAGAGAGGAGATGAAAAATAGAGTAATAATGAAGAGTGAGAGAAGAATTAAGAGAGAGAGAGAGATAGGCATCGGTACACTGTCGATCTCTGTGTTGCCAGACTGTCGTTTAGTAGTAGATGGGTATCACTTCGTTTGGTTGTCGGTCTACCTTCCTGTTGATCGTGTGACCAAATACAACCTATACATGCTTATACATATATAATTACTTTATTCAAACAAGAAATTTTGCAAATGAAGAGAATTCATTTGTAGCAATTGAATTTCTTAGAATTTTAAACTCCTCGGATTTTTCAAATTCGTCATCCAAACTCACCCTTAAGTTTTCTACACATACTTATAAAGACCAATACACATTAATATTTAGTTTGGTAATTTTTAAACTCGGTGACAAATTTTCGGTAATATCTTAGTGATAAATTTTCTTTTTGGGTGTTGGCTCATTATTGTTTATTCATTTTTTGCTAAGTATACATCATGGAATGGTTATTTTATCATTTACTGACTGCTACAGAAATATAACTTAATGCCCAAAAGATACATTATGTCATTTTGCTGGATGTTTCAATTGGTCGATGAGGGTAAGGTCCCTGTTAATTAAGACCAACTCAAACCCAAATAGCTTTTTTAAGTATGTAACTCGTGCGATGCTCGAGAAACAAATTTGGTTAAAAATATAAAATTAAATTAAGGTTTTGGAAAAATAAATACAATTGACGAAAAAAAATGTAATATTTAATATATGTAAAATTGTAAAATATCAAATTAAAATAGTGATTTAAAAATCAATATGGTAACTTGGTTACGTATTAATTAGAAAAATGAGTAATCCTATGTGTTATTTATTTTTATGGAGACAATACATCAAGTGATATCAGTGCTTAAAACCAATATACAAGCTGCATGTAACTTGCAATTGGGAGAATATTTGTTGAATATTGAATTGAATATTGAATATACTATAAGAAAGAAAGAACAAATCAAAGCAGGCAGCTGCTTGGAAAGTACTCAGTTAATTAAGACCAACTCAAACCCAAATAGCTTTTTTAAGTAGCTTTGATTGCTCAGAATAGAAACAAAAAACAACTCATGCAATGGCTTCCGTTGACTTTGTGCAATGTCTTCCGTTGACTTTGCTCCCTGCAAACATGAGTAACTACTTCAAGCCTTCAACTGATAAGGCAAGTGTACTACTCAAGATATACCTGTGTAGCTTATCTAGAAAGAATAATGTCTTCCTTTCAACTATATCTTGAGGAGACTTTTCTAAAACAAAACCAATCCTTTCTCCTAATCAAAAATCAATCTAGGCTAGCAAATTGGATATTCAGGTATTGTTGGAGTAGAAGTATGAAGAAATCAGAGGAGAGTAAAAAAACAAAAGGTAGATGAATATGACTCAATTTCATGACACTCTTGATTTCTGAACATTTCTCAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01094.31	ANF_receptor	59	397	1.50E-27
PF00060.29	Lig_chan	575	684	5.20E-17
PF00497.23	SBP_bac_3	479	744	3.80E-13
PF13458.9	Peripla_BP_6	53	388	1.40E-09

Gene family

Gene family	Subfamily
Transporter family	GIC

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	Cellular Component
GO:0071944	cell periphery	Cellular Component
GO:1990904	ribonucleoprotein complex	Cellular Component
GO:0005840	ribosome	Cellular Component
GO:0038023	signaling receptor activity	Molecular Function

InterPro

InterPro term	Description
IPR001638	Solute-binding protein family 3/N-terminal domain of MltF
IPR001828	Receptor, ligand binding region
IPR044440	Plant glutamate receptor, periplasmic ligand-binding domain
IPR028082	Periplasmic binding protein-like I
IPR001320	Ionotropic glutamate receptor, C-terminal
IPR015683	Ionotropic glutamate receptor

trEMBL

trEMBL term	Description
A0A1S3EH42	_

SwissProt

SwissProt term	Description
GLR29_ARATH	Glutamate receptor 2.9

KEGG

KO	Description	Enzyme
K05387	glutamate receptor, ionotropic, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G29100	glutamate receptor 2.9
Medicago sativa L.	MsG0780037924.01.T01	_
Oryza sativa L.	LOC_Os06g06130.1	glutamate receptor, putative, expressed
Cucumis sativus L.	Csa011486	_
Glycyrrhiza uralensis Fisch.	Glyur001874s00043446.1	_
Codonopsis lanceolata	Cl_chr05_44860T	_
Arachis hypogaea L.	AH16G31210.1	Glutamate receptor 2.5 like

Expression pattern