Gene detail

Detail information of Am08G002820.1 Annotation

Gene ID	Annotation
Am08G002820.1	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G002820.1	mRNA	Chr08	18717300	18723362	-

Sequences

CDS:

>Am08G002820.1
ATGGCAAACAGGTACTGGGTGGTATCTCTTCCCGTCCACAACTCTGCATCCACTTTGTGGAATCAATTGCAGCAAAATATCTCTAAACATTCCTTCGATACTCCTCTTTACAGATTCAATATCCCTAATCTCCGTGTCGGAACCCTAGATTCTCTCCTCTCCCTCAGCGATGATCTATCTAAGAGTAATACTTTCATGGAAGGAGTGTCGCAGAAGATCAGGCGCCAAATTGAGGAACTGGAGAGAGTTTCCGGTGTAGTGGCCGGTGGCCTCACCGTTGATGGAGTTCCTGTTGATTCTTATTTGACTAGGTTTGTTTGGGATGAAGCTAAGTACCCGACTATGTCGACTTTGAAGGAGATCGTGGATGGCATTCACGGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAGTAATATCCGAAGTCAGCTCAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTTCGGGATCTTTCCAATTTGGTAAAACCCGAGGACATTATAACTTCAGAACATTTGACTACCCTCCTCGCCGTTATTTCCAAGTATTCACAGAAGGATTGGCTATCAAGCTACGAAACATTGACAAGCTATGTGGTCCCAAGATCTTCTAAGAAGTTGTACGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAATCGTGATGCAGACAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGCGATTTTGAATTCAGTCCAGAATCACACGAGAGCAGAAAGCAGGAATTGGATAAATTGGTGCAAGATCAGGAAAGTTTGCGGGGTTCTCTGTTGCAGTGGTGCTACACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTTTGCCACCATCTTTCTTGGCATGTGTTTTGTCTCCATCTGTAAAAGCTGAGAAGAAAGTACGTTCAATCCTGGAAGGGTTGAGTGATAGCACAAACAGTGCATATTGGAAGGCCGAGGATGACGTAGGTGCTGGTATGGCTGGCCTAGCCGGTGATGCCGATTCACACCCCTATGTTTCCTTCACCATTAATCTTCTTTGA

Protein:

Promoter(3k):

>AM08G002820.1
ACCATAAGGACTAAACCAAGAGAACTTCTTACCAGCCACTGATACGTCAACAAGGTCCATATTCACAATAAATTTATTAAACTCATTAATTTCCTAAGAAAAACCCCCATCAGCCCTTCCTTTTCTCTCCTCAACTTTAGAGATGGAATTGAAATCCCCTACCACACACCACTCACCTCTATTAAATCTCTGCTTCAATCCGTTCAAATCTTCCCATCCTTTACGTTTGCCTGATCTAATCAAAGCTGCCAAATGACGACGCTTGTCTCTATCTCCCCACCCGCACATATTGAGGGATAAAATATTCATGGTACACTGTTGTTGGCCACCCCCTTTCCCCTAGCATCTTGATCACGCCTCTCACCTGCTTCAATCATCTCCACATAAGTCTCATCTACTTGTCTGCCTTCCACTCCAAGCTTCTTAGCATCTTCCCACACCTTCCGTGCCACTGCCTTGTTTTGAAGAGCCCAAAATCTTGCTTGCTCGACGCGTTGCTTTCGTAATCTCTTTCTTCTATTATTTTATGCATGACGAAAGAGAGTATCACATGGGGGAGGAGAGCGCTCCAAGGAGAATCAACGGCGCCGACTCTATGGAAGGATACTAACACAATGTTGATAGGGTATCTAACTTCGTAGTTAAATGGCTATGGCGTGGAGCTTATTAATTGACGTGACACATGATGTAGGCACCACACGCAGCTGCCACGTCAATTAACGAGATACGTCATTTGCCACATATTTATTTATTTAATAAAATATTTAAGATAAAAGTATTTATAATTAATGAGCTCCACTTGAACTTAATAATAAGCAAAATCCCCTATTGGACTAAATGTTTGAGTTTTTAAAATAGGATACTAAATGTCTGAGTTGTTTTTTTTTATAAACAATGTTAATGGGGAGGTTGGGGTGGGGTGGGGAAAGAGGACTAAATGTTTAAATTTTTGAAAATAGGGGATCAAAATTTTAATTTAGCCTAATAAAATAGATAACTTTTTTTTATAAGCAATGTTAGTGGGGGTGGGGGAATGTTAGTTTTCGGGAATTGAACCCGGGACCTCCTTCTTGCACTCATTTGGTACACTCTTTCAGTATTCCTCAGCTCACCAACCGAGCTAAGGAATACTGATTTGGGATAATAAAATAGATAACTTGAATTTCTCAAAGGATATTGATTTCCATATTTTTTTTAGGTTTAAATAGTTATTACCCCCCTGCAAATATACCCATTATCCAGTTACCCCCCTACAAAAAAAACATTTAAAACAAATCTTGCAAAATGTAACGTTATCCAGTTACCCCCCTGCTGTTAAGTTTTCTGTTAAAAAATGTAAAATTAACATTATCCAGTTACCCCCCTGCCACGTGTCACCATATTATTGGGCCTCTGTGACACGTGGCACTGACATGCCACGTCAGCTCCTATGTCAGCCACGTGGCACTGACATGTGCCACGTCAGCAACCAATGGATGGATGCCACGTGGCACTGTTGTTACACTCAAAATAAATTTTGAAAATGGCTTCAGTAAGACTTGAACACATGACCCTGAAGTGGCTGAAACACACAAATACCACTAAACCACTTGATTCTTTTAGTAAGTTAAGTGAACTACTAGTATATAATACATAAATAATTCGATTAACAAAATAAAAAAACAATCACCACATATGTGTTTCATCATCACCAATGTGTTTCATCATCATCAATTTTTCCAGCAACCAATGCATTTCATCATCACATAAATAATTTTTCTACCAAATTCATCCTCATCATTCCTCATCTGCAAACACAAACACAAACACCAACAAACTGAATCTGGACGAAAAGATTTTCTTAAACCAAATAAGCCCAATTTGGGATCATTTGCACCAGATGCTTCTGAATTCTGGGTTCAGATCCTTCGAATTCGATTTCGATTTCGTTTCAGATCCTTCATTTTCAATTCTTCTTTCTATTTCGTTTTCGTTTTCAATTCTTCTTTCTATTTCGTTTTCGTTTTCAGATCCACCATTTCGTTTTCAGATCCACCATTTTCGTTTTCATTTTCAGATCCACCATTTTCGTTTTCGTTTTCGTTTCAGAAGAGGAAGAAAGGGAAGGGGATACGACGCGATGGTGGTGGCGACGCGACAGTGAGAACGCGACGGAGGTGGCGACGCGACGGTGGTGGCGACGCGACAGTGAGAACGCGACAGAGGTGGCGACGCAGCGGTGGTGGCGACGCAGCGGTGGTGGCGACGCGACGGAGGCGACAGGTGGTGATATTTGGATCTGGATTTTGATGATTGTTGAAGATCTGGATCTGGATTTTGATGATTGTTGAAGACACGACAGTGTTCCAGTTTTTTTTTTTAAATTAAGTTATATTTATGTATTAAATATTTGTATGTGACTTAACTTATCAAAGAAATCAAGTGGCTTAGTGGTATTTGTGTGTTTCATCCAATTCAGGGTTATGGGTTCAAGTCTCTCTCAAGTCAATTTCAAAATTTATTTTGGAGCACTAATAACTAGTGTCACGTGGCAGCCATCCATTGGTTGCTGACGTGGCAGTGGTGACATAGGAGCTGACGTGGCATGTCAGTGCCTGACATGCCACGTGTCACAGAGACCCAATAATATGGTGACACGTGGCAGGGGGTAACTGGATAATGTTAATTTTACATTTTTTAACAGAAAACTTAACAGCAGGCGGTAACTGGATAACGTTACATTTTGCAAGGTTTGTTTTAAATGTTTTTTTTTGTAGAGGATAACTGGATAATGAGTATATTTGCGGGGTAATAACTATTTAAACTTTTTTTTTACCATCATATTCACTCCCCCGGTCGTAATTTATACCATAGTTTTCAGTTTTATTTTAACACATGAAGTAAAAAAAAGGGAAAGGGGTGTTGTTTGATGGAGAGAACGGATGTTTGGTTATAATGATGTGGTATCTCAAATTTGGGCGTTGAGCAACACTGATCGATTAGAGAAGAGAAGAGAGCATA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03223.18	V-ATPase_C	5	369	5.10E-123

Gene family

Gene family	Subfamily
Transporter family	F-ATPase

Gene Ontology

GO term	Description	Category
GO:1902600	proton transmembrane transport	Biological Process
GO:0016471	vacuolar proton-transporting V-type ATPase complex	Cellular Component
GO:0009826	unidimensional cell growth	Biological Process
GO:0016787	hydrolase activity	Molecular Function
GO:0005886	plasma membrane	Cellular Component

InterPro

InterPro term	Description
IPR036132	Vacuolar ATP synthase subunit C superfamily
IPR004907	ATPase, V1 complex, subunit C

trEMBL

trEMBL term	Description
A0A6P4DRR6	_

SwissProt

SwissProt term	Description
VATC_ARATH	V-type proton ATPase subunit C

KEGG

KO	Description	Enzyme
K02148	V-type H+-transporting ATPase subunit C

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G12840	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)
Medicago sativa L.	MsG0780040049.01.T01	_
Oryza sativa L.	LOC_Os05g51530.2	vacuolar ATP synthase subunit C, putative, expressed
Cucumis sativus L.	Csa021870	_
Glycyrrhiza uralensis Fisch.	Glyur000763s00023756.1	_
Codonopsis lanceolata	Cl_chr02_09740T	_
Arachis hypogaea L.	AH06G23890.1	V-type proton ATPase subunit C like

Expression pattern