Gene detail

Detail information of Am08G002780.1 Annotation

Gene ID	Annotation
Am08G002780.1	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G002780.1	mRNA	Chr08	18645227	18647927	+

Sequences

CDS:

>Am08G002780.1
ATGAGTTCGTTTGTTTCAAGAATAATATCAACTGAGGGTATACTCAGACACTCGACAGCAGTAACAGCATCATGGACAAAAAACGCGAACCTGAGAAGCATGTTTGGGAAATACGTAGACAAAAGCAGCGTCTCGTGTTGGAACACGGTGATCGCCGATCTCGCTCGAAGCGGCGATTCCTTAGAAGCACTACACGCTTTCTCCTTCATGCGCAAGCTCTCTCTTCACCCAAACCGTTCCACTTTCCCTTGCACCATTAAGTCTTGTTCTTCCCTCTTTGACCTTCGTGCCGGAACACAAACCCACCAGCAAGCTTTTGTGTTTGGATTCGGGTCGGATTTATTCGTTTCATCGGCTCTAATTGATATGTACTCCAAGTGTGGTCATTTGAACGATGCGCGTAAACTGTTCGATGAAATTCCCAATAGAAATGTTGTTTCTTGGACATCCATGATTGGTGGGTACGTGCAGAATGGTTATGCTTGTGACGCTATTTGTCTCTTTAAGCAGTTGTTGTTGGTTGAGGAATGTGGGAATGGGAATGGGAATGTGGGGTGTGGTGAAGAGGGTGTTTTGGTGGATTCGGTTCTCGTGGGGTGTGTTCTTTCGGCTTGTTCTCGGGTTTGTGTGAAGAGTGTGACTGAAGGGGTTCATGGCTTTGTGATCAAGAAGGGGTTTGAGGGGTGTTTGGCAGCTGGGAATACTTTGATGGATGCTTATGCTAAGTGTGGGGAGATAGGTTTGTCCAGGAAAGTGTTTGATGGGATGGAGGAGAGTGATGCTTGTTCTTGGAACTCTCTGATTGCTGAATATGCACAGAATGGATTATCAGCTGAGGCTTTTAGTGTTTTTAATGATATGGTGATGAGCAGCAAGGTCAGATACGATGCTTTCACGTTGTCTGCAGTGTTGTTAGCCTGTGCAAATTCTGGAGCTCTGCAGATAGGGAAGTGCATACATGATCAGGTTATAAAGATGGAATTGGAGGATAATGTGTTTGTAGGTACTTCTATAGTTGATATGTACTGCAAATGTGGGAGAGCTGACATAGCTAGAAAGGCTTTTGATCGCATAAAAAGGAAAAATGTTAAGTCATGGACTGCTATGGTTGCTGGTTATGGAATGCATGGCCGTGCAAAAGAGGCTATGGAAGTCTTCTATGAGATGATAAGGTCTGGTGTCAAACCTAATTACATTACTTTTGTGTCAGTATTAGCTGCTTGCAGCCATGCTGGTCTGTTGAAAGAAGGCTGGCATTGGTTTAATAGAATGAAATGTGAATTTAATATTGAACCTGGGATTGAGCATTATTCATGCATGGTTGATCTCCTTGGGCGCGCTGGCTATCTTAAAGAAGCATATGGGTTGATCCAGGAAATGAATGTGAGACCTGATTTTATAGTGTGGGGTTCCCTTCTTGGGGCTTGTAGGATTCACAAGAACGTGAAACTAGGAGAGATCTCAGCAAGACAACTATTTGAGTTAGATCCAAGTAATTGTGGGTACTATGTACTACTCTCCAATATTTATGCTGATGCGGGAAGGTGGGACGATGTTGAGAGGATGAGAATATTGATGAAGAGTCAGGGATTGCTTAAAACCCCTGGATATAGTATAGTTGAACATAAAGGTAGGGTACATGTATTTTTAGTTGGAGACAAAGAGCATCCTCAACATGAGAAGATTTATGAGTATTTGGACAAATTAAAGGTCAAGCTGCAAGAGCTTGGATATATGCCAAATGTAACATCTGTGCTTCATGATGTTGATGAGGAAGAGAAAGAAATGGTTCTGAGAGTTCACAGTGAGAAACTAGCTGTTGCCTTTGGAATCATGAATTCAGTTCCTGGGTCAATAATTCAAATCATAAAAAATCTCAGAATTTGTGGTGACTGCCACATTGCAATTAAGTTGATCTCCAAAATAGTGAATCGAGAAATCGTTATCAGAGATTCAAAGCGATTTCATCATTTCAAGGACGGGTTGTGTTCATGTGGCGACTATTGGTGA

Protein:

Promoter(3k):

>AM08G002780.1
ACAAAGAACAAGGCTAGGTTTGTAGCAAAGGCAACTCACAACAACTGAGTTGACTACATCGAGACATTTTCTCAAGTTGCTTGTCTAGATACAATAAGAGCTTTAATAGCTCTTGCATCACAAAAAGAGTGGAGTGTTTATCAATTAGGCGCCTAGTCTGCCTTTCTAAATGTAGTACTAAAAGAAGAGATTCATGTTGAAAAACCACAAGGCTTCGTCCTAGAGCATGGTATAGCCTAATTGATCAATACTTTATCGATCAAGGATTCAAGAGGAGCAAGATTAAGCCAACACTATAGGTCAAAACTCAATGTCTCCTTGTATGTGGATGATCTAATTTACACAAGAAACAACACAAAGATTGTGATTAAATTCAAAGAAGACATAATGAAGACATTCAAGATGATCGATCTTGGCTTCGTAAACTACTTCCTCGGCATAGACGTAAAACAACAAAGAGAATGGTTATTTATATGTCAAATGAAATATTTAACACCCCATTTTTTATAAATAATTATTAGGACATATTTAAGAAATTATTTTATTTTAGTTATATATTTTTGGGGCTTAGAGTGAGACCTAGGTGTAACACTGAAAAATCTTAAATTAAATTAGGTGTAATAAAATTAATTAAATCAAACTTGTATTAGTTATGGTAATAATTAATATGTAAATGATATAATTAATTATATATGTTGTTAATTTGTTTTATGATCAACTGTCGTACGCGGGTCAAAATAATTATAAAGATATAAGATATAGTGCAAGGAAGTTAACCTTGGTCGTCTCACAAGGACCTCTGAATTAAAGACTACCAAGATCAAGAACGAAAGTAACAATAAAAGAGGTTTTTTTTAGGAAAAGAGTTTGATGTGTAACGAAGAAAATCAATTAAAGATAAACAATCAATCTATTGGTTTCATATGCGCTTCTTGGATTTCTCATCAGTTCTAAAATAAAGATTCATGCAAGGTTTGATAATTCTTGATTGATCATAAACTAACTAAACAAGCGTTAATCAGTTTAAACGAATTCACACCATTTTAAAGCAAGTGTCAAAACAGTGTGTTCAATCAATCGTGATAGTGAACAAGCGTCAGTAACACAATTAACATCATAACTGAATTCTATCAATCCTATATACAAGGGTTATAGACTCTATCAGTTTCTATCAAAACTAAATTAAACAAGCGATAAAATAGTTTGAATAATGAAAGTTGCAAAACAGAATCATGATTAAGTAATTAAGCAAAACTGAATCATAAAACGAATCACATAAGCAAATCAGAGTTTGAGTAATTAAGCAAAACACAAACCGAATTTGCAGCAAGAATTACGGAGATGGAATTGATAGAGAAAGAATTAAAACCACAAAAATGAAATAAACATTAAGCACCGAACCTCAAAATCCTTACAAGCAGCACCATTCACTGATAAATTGATATAAGGCTTAAGCTTCCATGGAGGTTAGAGCTCAAAGACGTAAAATTGAAAAGGAATGTTTAAGAGAGTTCAAAGCGGCTGCTAACCAGCGTAAATAACTAGGACAAAACGAAAAATAGTAATTCGAAGTTTTGATAAAAAAATAGGTTCTTGGATAAAAGCCCGATAAAAAATAGTAATTGGCCCATAAACCCATAATTGACTAAACTGCTTCGGTAATTCGCAGTTTTGACCTTCAAGACTTCTGAATTGGGTTTCGAGCTCAACAGAAGAATTATAGCCCTTTTCCTTAGCTTTCCAACGCATGCTCGCACACCTCCATCAGATAACCACAGCCAAAGTTATGGCCGGCAGAGTAGACAGGGGTCAATATGCAATAAAAACAAGAATTAGTCTGGAAATTGCTATATTGCTCAAATAAGACCCAAAATCTAGAAACGCGCCAAGACTTAAATATTAGACACATAACACAATCAAAAACACTAAGTGAGAATATATAAAGAGTGCATTAAAATGCACTAATCATTTACCTCAAAAGAATTAATTAAAATAAGTAGTACAATGGGAAAAGAATGAAGTATTACATTTTTATCATTTAATTACAATCCTTCAATAATAAGTAATTACACAAAAGATGGATATCTTCGCCTTTCAAGCCATGCACAAATTGTATAGAAAGTGGCCACCTCGGTACTTGCTTCACCTACTATCGATTCATGGTGAAGTAAGCTAAGCTTAAAACTACACCTCATACTTGCTTATGGGATGATCAAGAAACGCGATGAACTATAGAAAACGCAATTTCTAGAACCGAATCAGAGAAATAAAATCAAGAATCAAAGATGATCGAGGAACAGAAAACTAACGCGACGCAAAAGCAGAATCAAGAGAATAAGATATTAGGGTTCCGTGAATGGGAAACAAACTTCACATAGGAGAAAAGGGAGCTCAAAGAGAGCAAAAAACACTAATGAAAAAAAATTAATAAAATAAATAAAGAAGCTACGGCAAATTAGCTGGATACCATGTTTGCTCTGATATCATGTTGATGGAAATTAGAGAGAAAAACCCTTAAAAGTATATCATATTGAAATTAGTAAGATATTATAAATGAGAATAGTTGATTACAAATGACTCTACCATCTACCTTATATACTAATCAACTAATGGGCCTTACTACTAACTAATGGGCTTACTATATATATTTTAACACGACTAAACCAAGACAACTCTTATAGAAAATGAATGGGAGGAAGAGAAAAGAGGAGAGAGAGTGAGGTCCCAATGGTGGTGGAGAGAGAGTGACACGGTGGTAGAATAAGTAAAATAAAATCGTCGTAATTACACGCCCAAATATTCACACCTTATATTATTCTCCGTTGGAAATTACCGACAGACAATTCATGCTGAAAAAGACCATCGTTGGCGAGGAAATTATTCTCCGTTGGAAATTACCGACAGACAATTTATTAAATCTGCATTCCCTCCAAAACCTCTATTCTAAAGAGACCGTGATGATAATGAATGAACGAATGAGTGAAACCGCAACAGCATAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01535.23	PPR	365	394	8.90E-50
PF13041.9	PPR_2	43	89	2.40E-46
PF13041.9	PPR_2	260	308	2.40E-46
PF13041.9	PPR_2	361	408	2.40E-46
PF14432.9	DYW_deaminase	577	669	2.80E-43
PF20431.1	E_motif	479	541	9.00E-24

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	Molecular Function
GO:0009451	RNA modification	Biological Process
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0004519	endonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046848	E motif
IPR032867	DYW domain

trEMBL

trEMBL term	Description
A0A1S2XS11	_

SwissProt

SwissProt term	Description
PP258_ARATH	Pentatricopeptide repeat-containing protein At3g26782, mitochondrial

KEGG

KO	Description	Enzyme
K23541	Ca2+/H+ antiporter, TMEM165/GDT1 family

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G26782	Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.	MsG0780040056.01.T01	_
Oryza sativa L.	LOC_Os07g20420.1	tetratricopeptide-like helical, putative, expressed
Cucumis sativus L.	Csa015041	_
Glycyrrhiza uralensis Fisch.	Glyur000930s00030238.1	_
Codonopsis lanceolata	Cl_chr05_01500T	_
Arachis hypogaea L.	AH06G23850.1	Pentatricopeptide repeat-containing protein At3g26782, mitochondrial like

Expression pattern