Gene detail

Detail information of Am08G002600.1 Annotation

Gene ID	Annotation
Am08G002600.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am08G002600.1	mRNA	Chr08	17139305	17147148	+

Sequences

CDS:

>Am08G002600.1
ATGTCCATCTTGCCCTCACAAACCCAAGCGGCAACTTCATCTTCTTCATCAACATCATCTCCAAACCCTAATTCCCAACATGGATTTCCAAACAATTCGTCTTCTCTTTTCCCCCAACTCAATCACGCTCTTGGATCTCTTCAGATCTCCGATAATCCAGGTCCATCAACTCCAGCTGCAGAGGATTCTGGTGGACCCTCCGAAAAGGTGACAGAATTAGGATCTTCAAGTGGTATGAAGGCCTCACCTCAGCAAAACTCTAGAACACATTCTAGGAGTCACTCTGGAAGACGGACAGTGGAATCGTCCCAGTCTGTGGGGAAGGCGCCAGTTTCTTCTCATAGAAATCAACAGCCTCCCCTGTCTGCAAATTCTCAGGGAAACACCCCTTTGGCAGGGAGGAAATCTCAGATGGTGAATGGAAATTATTTGCTCAACTTTCAGTATGATCCGATATCCCGTTCTCAGCAAAGGGGTCCTCCCCCCCCTCCAGCAAGAAGGCAGCGGAAGAGAAAACCTTACAACAAAGATTTGTTTTTGCAGGCAAATTTCAAATTCATGGTGCTAGATTCAGGAAATTATTCACCTGAGTCAATGGATCCCGATAAAATGTTGCAGTGGGAAGATATTATATGTATGACATATTCGACCCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGCAACCCCTGTGTCCTCAAATAACCTCATGTGGACACATTTTCTGTTTCCCATGTATTCTACAATACTTGTTTTTGGGTGACGAGGATAACAAAGGTGATTGCTGGAAAAGGTGCCCATTGTGCTTTGTGATGATATCTGTCAAGGATTTATATACAGTCCACATCACAAATGTCAAACAATATCAAGTAGGAGATAGTATTGAGTTCACTTTCTTAACACGAAAAAAGGATTCATTTACTCTGTCGCTTAAAAATAATCAAGAGATGGATAACTCATCATGTGTCGACGGAGATGTATCTGATCCCTTTTCTAAGTTCACACTCATATCAGATGTAGATCTTTCAGTGAGACGTGCAATATCAGATCTAGATGGTTGGCTTGCTAGAGCTGATTCGGGTCTTGTTGATGATCTGGAGAAGCTTCCATATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAAGTATTGGAATGAGCACAAGGCTTTGGACATTGAAAAATCTTCTAATCTCATTGATGATGCACATCAGATGCCATCGACAGCTGCAAATGATATGGATGCTGATGATGAAAACTATTCAAGTGGATCTAGAACTTCGTCTACTGATTTCCCTGACCAAAGTAAGGTTGTAGTATCGGATAAGTCAACTGCTGGAGTCTCTCAGGATCAAACTTCAGATATGGATAATGTATTCATAAAGCAGGAAATGAATTTATCTTCTTCGTATGAGGAGAAAAATGGTATTCAAAGGCTTTCAAATGGCATTGAGGACACAAAGGAAAATGATTCTTACAATTTCTATCAGGCTACTGATGGTCAACATCTAATTCTTCATCCTTTGAACATGAAGTGTTTACTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGAGGGAAAATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCTATTAGGAGGCGGTATCGATTCCTAAGTCATTTTCCGTTAACCACAACCTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTACCTCCTGAAGCACTGACCCCATTTATAGATGAAATAAAGAAACGTGCAACTCAGAGGAAGCAACTTGCAAAGAAGGAACATAAGGAAAAATTAAAGGCTGAAGCGACTTCTACTTATTCTCTTCCAATAAACAGTTATCAGCTTATTTCACGTGGTGATTCTCCCACATTCTCCATGGATGACTTTGAAGCTCTGGGAAAGTCAGCTATGTCATCAAGTCCCCCTATTGTTGGTGAAAGAAAATTGTTCTCAAGTGTTACCAAGCTTGGTTTTGCTGCTGCTCATGATTCTCCATCCTTACAAAATCAAGAAACCAGCGGTCTACATAATAACAACACACATAATAACAACACGATCACTGATTCTTCTGTTACAACAGGTTTGAGAAATGGGGAGACACCATCATACTCCAATATTATATCTAGAGCAGAATCTAATGCAAGTCCAAATGCACCGAAGACAAATGAGTTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTCTTCTGTCAACATCGGGTGGCAGACGTTATTAA

Protein:

Promoter(3k):

>AM08G002600.1
TTCTTTCCATGTGAGACATTTCTCTCTACCAGAGAAGTATCGCTTGAAAGTAAGAAAAGCAATAGAAAGAGGGATTTGAATAGAGTTTTTCACAAGATCTTTACTAAATCTTTGATTTCAAAAACCTTTTATAAGTAGTTTATAAAAAAAAGGCAAATGAAAGCAAGTACATGAAGCATAAGATTTATTGTGGTAGCTAGTCCAACCCCGTCAAAATCTTTGAAGGACTTCTACTAAAAATTTCTTTTACAACGCCAAGAGTTTATTCATGGCTAAATTCTCAGCCTCTAAGGAAATGTTATTATTGGGCGTTTTACAAAGTAAAATCTGTGTAATGATAAAGTCACTCTCAACTGAGATATTTTGAAAGCCTTTAGAAATATAATTGAAATATTTTTTGTTTCTCCTGGCTTTAGAATACTGCTTCAAATATAAAATATGCTTTGAATGTGGAAGTTTGTTGAAATATTCTTGATATCTTGTATGTTTAAATATTTTGAACCGAATAGTTTCACAATCGTTAGTTGCTGAAATGCCTTTTATAGAGAACTAGAAATTATAATCGTTGATGCACATCCTGAGATAGAAATCTATCTATTGAAATTAAGATATCGCGTGGGAGACAACTGCATTAAATGCAATCTGGTTATACATTCAATCGCGCCAAAAATCTGCTTTATCTGGACACTACTATGAACTATATGAATGATATATAAAAGAAGGGGGACCCATATATTCGTTGTCTTAAGGTGGGTGGAGAAGTGACGTCCAAGTCTCTTGGTGGTCCGATTCATTGGCTAGCTCGTTGTTGCTCCCGGTGCTCACCTGAACTTCCCAACAGTTATATATGTATATAATGACACAATAGAAGATTAAAAGAAAATATATATTATCAAGGAAATAGTTTCGTCCACAGAAAGATAAATTTAAAACCGAAAGGATTAACAATCTAAATAGACAATAACGTCAATAAAAAGTTAAATAAAGAATGGAAATGCAATCAATCACCCCAAAAAAATTAACTTTCTTCTCGAATCTCTTTGGAATTCTCCCTCCACTAAATAGAAATACCATATTTTCTTATATGGTATTTATTTAATATGTGTTTGCCTTATGAATTATAAGTTTAATTATTTTTTATGTATATTTGAATTATTAAATTATGTTAAATTGATAATTAATTGTATTTTGAGAGAATATTGATATCATATCAATTTATTTTAAACTATTTTATTTCTATAAGATATTTTATTTTTTTGGAAGAAACCTTATAATAGAAATAGTAGACATGTGCATGGGTGAAGGAGAAAAAAAGTAGAGTTGGTAAGAAAGGTAGCAAGGCAGAGTTGTTAGAGGAAAGTGGCAAGGTAAAAGCGACCTAGAGGAAAGTGGAGATTTCCCCGCCCTAATGTGCTAAAATTTAACTCTGATGCTCATTTTGATGTGAGCACAGGGCGTGGAGCCACTAGTGTTGTTTGTAGAGATGAGAATGGCAAGTTAATAACAGGAGTTACCTCAAGAATCTTTACCTTTTCTGCCTTAGCAGCTGAAGCAATAGCGCTTAGAGAGGCTATGTCTCTTGCAATCAACCTGGAGTGCACCAATGTCCTCTTCGAATCAGATTGTTTGAACCTAATAGAAACATGCAGAGGTAATCTAGTTAGAGATGACATCTGGAACATCATTCAAGACATAAAGAAGATGAAAGAATCATTTTCCTCGGTTGGCCTGCTATGGGTGCATCGGGAGGGTAACACGGTTGTTGATTGTGTGGCGAAGCTTGCTTCTTCCAACCAACTTCCGGCGAATTAGTCTAGTGTTCCTCCGAGGACTATTCAACTGCTTTTGGACGCATATCGCTCGTAATCTCTATCCCGTGGAGCTGTTCGAATTTGAGAAGATGAGGAGAAGACGATTCGAGAGAAGTATAGTTGAAGAGGTAATTGAATCGTGAGGTTTCTTTTGGGGCTGAGAAGAGATTTTACCAATTTGGGTTGGTGGTTGTACTTTTAATGGGTGCTCAATTATTGTCACCTATTTTGGTGTAAGTAATTCGGTAACCAGGTCTCTTATTATTAGGGCGGGTATGTTTGAGGATTATGTTTGTGTGTTATTCCCGTTTGGGCCGTGGACCACGTGTCCGGATTGTTGTGTTTGTATTCCGATTTTGGGTTTAGCCCAGTTATTAATGATATATGTCGATCCAGTTGTCCAAAAAAAAGCTATATGTGGTCTTACAAATGGTGGTGACAATAGATGAACCAATGAGCATATTTTTCATTTTGATATTTGTAAAAATTCGGAGATTTCTCAAGGTCATTAAAGTCGTAGCACCTGACGATAATTTTTCAAAAAATGTTACTTCTAAGTAATTGTACAAAAATATGTTAGCGTTGAAAATATTTATTTCCATTTATTATGAATTATAAATGAATTTAAATAAATTTAATAAAAAAGATATACTTTTGCGTTTGACAGAAAACGTTTATTTGTCGGTACTTTTTTGATAATATTGATATTAAAATATTATTTTATTCAATTGTTTTATCTTTATAAAATATTATTAATAATTGAATTATTTATTAGTTGTGGCAAATGAAACGTAATGTAAGATGGAAATAGTATTACAACAACAACTTTTGTAAAACATAGCCCAAATTTATTCCATCACGGGAGATCGAACTCGAGTACTAGCTGAATCTATTCCTTTAGATGAGATGCATTAACCACTTGCACCTCAATTTGGAGGCAAAGTAATAAGGGAGCTCATGCAACACCAAATTGAGGAATTACAAAGTTTATGAAGGACTTGATTGTAATTACAATTTAGAGAATCGATATTCGGAAAAGATGCGGCAGGGATACCTCGAACCGAACCCCACTCTGCCGCGAAGCCAACAAGAAACAAATAAAACGTGTTTTTCAAAAATCACATTAATTTTGGTAAAGTAGAAGCTGAGAAGCAGTGACGAATCCCAAACCCTCCCTTCCAGAAATTTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00097.28	zf-C3HC4	223	269	2.90E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0140096	catalytic activity, acting on a protein	Molecular Function
GO:0009846	pollen germination	Biological Process
GO:0009860	pollen tube growth	Biological Process
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process
GO:0006486	protein glycosylation	Biological Process

InterPro

InterPro term	Description
IPR017907	Zinc finger, RING-type, conserved site
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR018957	Zinc finger, C3HC4 RING-type
IPR039739	RING-finger protein Mag2/Rnf10

trEMBL

trEMBL term	Description
A0A2Z6M3G4	_

SwissProt

SwissProt term	Description
RNF10_XENLA	E3 ubiquitin-protein ligase RNF10

KEGG

KO	Description	Enzyme
K26979	E3 ubiquitin-protein ligase RNF10	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G26730	RING/U-box superfamily protein
Medicago sativa L.	MsG0780040064.01.T01	_
Oryza sativa L.	LOC_Os02g31150.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa015036	_
Glycyrrhiza uralensis Fisch.	Glyur000380s00017136.1	_
Codonopsis lanceolata	Cl_chr03_19010T	_
Arachis hypogaea L.	AH06G23720.1	RING finger protein 10 like

Expression pattern