Detail information of Am08G002380.1 Annotation
Gene IDAnnotation
Am08G002380.1 RNA polymerase II, Rpb4, core protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am08G002380.1mRNAChr081481597714817755-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF03874.19RNA_pol_Rpb41251835.20E-08
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0006352DNA-templated transcription initiationBiological Process
GO:0003899DNA-directed 5'-3' RNA polymerase activityMolecular Function
GO:0030422siRNA processingBiological Process
GO:0000166nucleotide bindingMolecular Function
GO:0005634nucleusCellular Component

InterPro
InterPro termDescription
IPR038324Rpb4/RPC9 superfamily
IPR005574RNA polymerase subunit Rpb4/RPC9
IPR006590RNA polymerase Rpb4/RPC9, core
IPR010997HRDC-like superfamily
IPR045222DNA-directed RNA polymerase II subunit Rpb4-like

trEMBL
trEMBL termDescription
A0A9D5BNK9 _

SwissProt
SwissProt termDescription
NRPD4_ARATHDNA-directed RNA polymerases IV and V subunit 4

KEGG
KODescriptionEnzyme
K03012DNA-directed RNA polymerase II subunit RPB4

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT5G09920 RNA polymerase II, Rpb4, core protein
Medicago sativa L.MsG0280007544.01.T01 _
Oryza sativa L.LOC_Os02g49150.3RNA polymerase Rpb4, putative, expressed
Cucumis sativus L.Csa005674 _
Glycyrrhiza uralensis Fisch.Glyur000088s00007714.3 _
Codonopsis lanceolataCl_chr01_45990T _
Arachis hypogaea L.AH14G07250.1DNA-directed RNA polymerases IV and V subunit 4 like

Expression pattern