Detail information of Am08G000190.1 Annotation
Gene IDAnnotation
Am08G000190.1 RNA helicase, ATP-dependent, SK12/DOB1 protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am08G000190.1mRNAChr0821118562121821-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF13234.9rRNA_proc-arch5067781.10E-70
PF08148.15DSHCT8059756.00E-48
PF00270.32DEAD602075.90E-19
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0005524ATP bindingMolecular Function
GO:0070013intracellular organelle lumenCellular Component
GO:0009507chloroplastCellular Component
GO:0016787hydrolase activityMolecular Function
GO:0031125rRNA 3'-end processingBiological Process

InterPro
InterPro termDescription
IPR025696rRNA-processing arch domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR001650Helicase, C-terminal
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR011545DEAD/DEAH box helicase domain
IPR016438ATP-dependent RNA helicase SKI2-like
IPR012961ATP-dependent RNA helicase Ski2/MTR4, C-terminal

trEMBL
trEMBL termDescription
A0A1S2XGT0 _

SwissProt
SwissProt termDescription
MTR4_ARATHDExH-box ATP-dependent RNA helicase DExH9

KEGG
KODescriptionEnzyme
K12598ATP-dependent RNA helicase DOB1[EC: 5.6.2.6]

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein
Medicago sativa L.MsG0780039866.01.T01 _
Oryza sativa L. _ _
Cucumis sativus L.Csa008506 _
Glycyrrhiza uralensis Fisch.Glyur000251s00019370.1 _
Codonopsis lanceolataCl_chr05_32100T _
Arachis hypogaea L.AH14G39480.1Superkiller viralicidic activity 2-like 2 like

Expression pattern