Gene detail

Detail information of Am07G013170.1 Annotation

Gene ID	Annotation
Am07G013170.1	myb domain protein 52

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G013170.1	mRNA	Chr07	103203204	103206867	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM07G013170.1
AGGCGTCCCAACTTTGAGCCGCAAGATATGATTTGGTAAGCCTGGTGAAGCAATTGTGTTAAGATATTCTGTTGTATGGACATTATCGACACGATCAACATTGATGGTGTCAGAGTGAGGTGTGTCAAGGGTAAGATATGTCATTTCATCCCCTGTCATTTGAAGTAACATGAAATCGTTGATTGTCTCAACAATGGCGTTAGTTGGGGCTAGGATAGCGCGTTGTTGGTAATACATGTGATCCACATCCGCTTCCAAAACACACTATTGTGAATACTGAAGCATCCCAAAACATACTACTTAGCATTGTACTTTGACTAATTTTGTGATTTGTTCTATTTTAATTGAAAATAATTTTTTTTAACACTGCTACATGCTCAAGACTGAATTCGAATCGATGATCTTGTTTAATCTAGAAGAAACCCATACCATCTCATCCAATTGGTTTTGGGTTAATTGAAAATAATCTAACTGGCCAGATAATAACATATTAGGCTTAAATATGTATTAAAAAAGTAGGCTTAAAATGCTCTTAAAGACTGTTTTTTTCATAATAAATAAGAAGATACTAATATTTACAGGAAGACTCAACCCATATTATACAAAACACTAATTGCAAAGACTTTTTTTTGTTCCTCCTATTATACTCCGTACCCTCATAATTCACCAAACGGACGATTTTACCCTTGATTTTTGACTCCGGAAATACGCCAAAACACATAATTTCGGAAGCCAATTTTTTGACTTTCAGAATTATGTCGTTTGGGATAATTCTGGAAATCTTTTAAAACCTGTGTTCCGGAAACCTTAGTTTAGAACTTTCCGAAATCACCTCGAAAGAGGTATTTTCGGAAGTCAAAATTGGCTTCCGGAAATACCTCTTTTGAGGTGATTCTGGAAAGTTACAAAAAATTGGCTTTCAGAATTATCTTCTTTTGACGTAATTCCGGAAATATTTAAAAAAATCAGTTTACTTTGGTTTCGATTGGATTAGATTTCGGTTTTTTGTTTTCTAAAATTACTTACGATGCAAAATAAAAAATAAAGCTCTTTCATAATATCAAAAGATCACACATCCTCAAAGAAATTGTACTTTACTCATTTCGTTATGATTTTTTTCACCAAACAGGTTACTGAGGAACAAACTTTACATAATTTATCACGAAATTTATTTTCATTTTCCACCTATTCGATTATCGAGGAACAAACCTAACATATTTATAGATCAAATTTTTTCCTAAATTTTTATGTATTTAAAAAAAATGAAAAAAAGAAAAAGAGGGGGGTAGGGGGAGGGGGGTAGGGGGAGGGGGAGGGGGGGAGATTTGGTTTGGCGCTCAAAGTGGGAAAAGTAGATATAGGATTAATATATGTAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAAATATTCAATAAATTTAAAACTGCATTTTTCTCTTATAAATTGGACGAGAAGTAGTACTATAAGTTTATTCATTGATACGGATCAATCTAATCCATCTTGAAGGAACCGTTTACATTAACGTAAAAATTTACTCGATTGTGTTTTATTTTTGTCATTACCCATTAAGTTGTGGGGGGGGGTGGGGGGGGGGGGGTGGGGGGGTGGTATAAACAGAAGCGGTAGACCAGATGTTTGACTGACGCAGTAATTTTTAAACAAGGGGAATGATATATAATCATATAAATAGTACACAGTCCACATCCACTTGTAAGGATTCTAAGCTAAGTAATGTAGTTAGTTATGCCTGAAAGCTAATCAAATCAAAACCTAAAACATATATATATATATATATATATATATGTGGTTCGGACCATTGCAGGCTACGTACCCACGGAGTGTCCCAACGCTTTCAACGAAAGACTAATCTCCGCTCGTGCTTAGGATCAAATTTCGCACTGACCAATACCGAGTTTGTCCACCGTGGGAATCGAACCCGAGAGCACCGGGTCGACCCTCATTGTATCTCATGGTAGATTAAGCCATTGGGCCAATTGCGTTGGTTCTAAAACATATATATCTGCGTACAACTTCCAAATATATGTAAATATAGTCTAACAATAATACCAAACTCTCCCCCAAATCGTTTCATATATTTTTTTAATGTATAATTCCTTGAATTTTGTTTTTTTGTACACACATCACACATGGATACAAAAGACTCTTAAGTAAATATTATGTGTCATGTGTTGAATTTTAGGTGATAGCAATTGAACATAAGTATCATTATATATTTATTTATTTAATTTAATGTTTTTCTAAGTATTAATTGTCGTGTCAATTGGATTATTGTGTATATGCATGTATCATCTCACATAATCACTAGCAAAGTGTCTTACGTTTCCTAAAAAAATATCATAGTTTTTTTACCAATATATACCATTTCATTAGTAAATATATAAAGTATGGAAAATATATGCATGCTTGGTGGGTTATAAGTAGAAGTTGTAGGTTAGAAACTTTGGAAAGACATTGAAAGCATAACCAAATTGGCTTTTCTAAGCAACCTCTTTTCTCCCCCTCACATCACATAATATATATACACACATATTATTATATTATATATCTATATATCTATGTGTGTTAAATGGGTTTGTTAGCCAAAACGTTTGCATCAATCTCTATTCCCACTCTCTAACGGAAAACTTCCCATCTTCCCCCACCATATATTCTCTTCTTATGTCTCTTTCCATTACTTGTCTTCAATATTGTTAATATCTATTTTCATCTAACTCCTCTTATATATATCCTTCTCTCTCCTTTTTTCCTCTACCTCTCTCTTAATATACAAATTCTTTGCATATCTTGGATTTGATATAGTTCAAATAGTACAAAAGCAAGAAGGAAGAATAGATATAGGAGTTAATCCTATATATTTGTTGAATTAGGGTTATCTCTTGTTTCTTTCTTTTGTGCGTTTTTTTACTTTGTTTATAGTTTGTAGAAGAGAAGAGAAAAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	4	50	5.00E-33
PF00249.34	Myb_DNA-binding	56	99	5.00E-33
PF13921.9	Myb_DNA-bind_6	7	67	6.80E-23
PF13921.9	Myb_DNA-bind_6	59	109	6.80E-23

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A896W3Q6	_

SwissProt

SwissProt term	Description
MYB52_ARATH	Transcription factor MYB52

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G17950	myb domain protein 52
Medicago sativa L.	MsG0680034761.01.T01	_
Oryza sativa L.	LOC_Os03g51110.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa004520	_
Glycyrrhiza uralensis Fisch.	Glyur000545s00023427.1	_
Codonopsis lanceolata	Cl_chr01_24630T	_
Arachis hypogaea L.	AH15G24110.1	transcription factor MYB44 like

Expression pattern