Gene detail

Detail information of Am07G012810.1 Annotation

Gene ID	Annotation
Am07G012810.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G012810.1	mRNA	Chr07	101661074	101665625	-

Sequences

CDS:

>Am07G012810.1
ATGTCTTCTGCCGGCGGCGGTGTCGGCGGCGTTATATCTGGCCAACCTCGCCAATATTATTGTCACCAGTGTGAACGTACCGTCTTAATTTCTCATTCCTCTGGCGATCTCGTTTGCCCCAGTTGTAACGGTGGCTTTCTCGAAGAACTCGAAAATCCTATTCCCAACCCTAATCCCACACCTCCTTTTTTCAACTACTCCACGGATTTCCCTTCTTCCGGTGTCGCCTTTCCTATCGTATTTTCCGGCGGTGCTCCTCAACCATTCGAAGATCTGTCCGCCTTATTTGGTAACCGATCATCGCCAGCGCCTTTTGGTGCCGCCGAACCGTTCAATCCGTTGGCATTCTTCCAGAACTATATTCAAACCCTAACTGGAGGCGCCAACGTCCAGGTCGTCATTGACAACACCGGTGATCCTACCGGAGCTTTTAGGATCCCTGGCAATGTTAATCCCGGCGATTACTTCTTTGGACCGGGCCTCGAGGATCTGATCCAACAACTTGCGGAGAATGATCCGAACCGTCGTGGGACTCCGCCGGCGTCGAAGTCTGCCATCGAAGGACTGCCGAATATTTCTGTGACGGAGGAGCTGTTGGCGTCGGATTCTTCGCAATGTGCGGTGTGCAAAGATACCTTTGAACTTGGTGAGACGGCGAAGCAGATGCCGTGTAAGCATATTTATCATCAGGATTGTATCTTGCCATGGTTGGAATTGCACAATTCTTGCCCGGTTTGTCGTTATGAGTTGCCAACAGATGATGCTGACTATGAGCAGAGAGCTCATGGCGGTTCTGGTGGCGGTGCTGGTGGCGGTTCTGGTGGCAGCGGCGGTGATGGTGATTCTCAGAGTAGGAGGTTGAGGGTGACATTGCCGTGGCCTTTTAGACAGTTATCTTCTTCTTCCGGTGGTGCTGAGACAAGTAATGTTGGGAATGTTAATAACAACAATAGCAATAGTGGGCAATCCAATACTGAAAGCAGGGGGAATCAGAATTTTGGGTCGGAGACAAGACAAGAAGATCTCGATTGA

Protein:

Promoter(3k):

>AM07G012810.1
TTAGTTTTTCTATTTCTCTCTTCACTTTAACTTTTTCCATTTCTCTCTCCATCTTCAACTACACTTTAAAAACAATAGGTTGTGTGAATTACAATTTTACGCTTCATAATAAATTTACTTTTTCATTTCTCTCTCTACATTTATTTATTTTACTTTTTTGGCTGTGATTGAATTCTGTCCGAGTCTATTTATTAAAAACTACGACATTACTCGTGCGTATGCACAAATATAGTTCTAGTAGATATTATTTGAAGAGTGCCACTGGTTGGACTATGGGTCACTTCATTGTTGGGGCTGGGTTCTCACATATACGCAGCACATCTAAATTAGAAATGCGATGTTAGAGTTTTGTTATGCCACATATTTAATAGCTATTTATATTACAAAAATTATTCTCAATATAAACCCAAGATCCCCTTTTGGACCGTTAAGCCAAATCAAATTTTATCTCAGTTTTTATTTGGCTTAACTGCAATTTTAGTCCCTCTATTGTGTCTAATCTGGAATTTTAGTCCCTCCATTTTTCTCGCAATTTTGGTCCCCTAATTATATTAAATGCGCAGTTTTAGTCCCCCTATTAAATTGCAATCCAAGTTTTGACGGAAATGATGATCGTGACAATAAGGTGGTGAGTGGCTGCCGCGTGTCGTGCTAATGCAAGCAATAATTAGGGGTTGACTTGGCAAGTAAATGTCATGTTAACCTGGGTGCCAACGTGTCATGCTGGCATGGGAGGTATTTATATAGATATTACAAAAATTCTAGACATCGGAGTTGAACCTAGGTGCCAAGGCCCATAGAGCCTCGCCAATTATTGCAATCACCATGCCAATCATTCCATATTACCTTAGGATTCATGGGTGAGCTACGACACTTCGAAATAGAATGTTTGTCAATCCTTCGAGGGTTTGCAATTGCATAAGAAGAAGCCTTCCATTAGATTTGGCCTCAACGAATTTTAAGCACGAGCCCAGATTAATAAGGAGGCTATCTTAGTGATCGTTTACCAAAACCTTTGTCACGTATCTGATCAATTCTAAAGAGAGGATCGCAATGATCATGGCCATGAATGACAGGGTTAAAAGTCCTCCATTAGAACCTAGGAGCCGTTGATATCTTGATGGGTGATTTTTATAGTGTCCAAAGGTATTTTCTTTGAGCAAAATGAGGGCTTCCATAGATTTGCTATAAGAAACCAGGGATGGTTTTACCTTCACCTAACCTTCGTATGAACTAATTGAGAGGACTAAGTGGTTACGTCAATATCCCAAACACTTGTATCCCAAAAACACCAAATTCCTCCAAATTGACCAATTGCCTCTTGATTGAATTGACCATCAAAGCCAAGCCCGCCACTTACTTTGGTCGTTTTAGGGCCACTAATATGAATTTCCACTAACATAAGGAAAGATAATGCAAATTCAACTATAGGGTCCCTAAATAGTCTGACAAAACCCATAGTTGCATTACTCATGCAGTTCCAACAATATAGATTCATTGAGACTTGATTGGAGGTTGGGATTCTAGCATTCCTTTTCTTCTCTTTTGGAATGGACGCTTTTTAGCTGGTCTATTTACCTTCAGATGAGGTAGGTTCACCAAGGGGACAATAGCAGGGCTAGGGGGAGTTCCCACCAACAATATTAGCTTGTGAGACAAATTTGCTTCCACCTTGTGCATCCGATGCACACACTCCATGAGGTTTTCATTGAACTATACGAGAGCCTTTCTGGGTGTTGTCAATGCGCATGTGTGAAAATTGGTCTTTAGTTGTTGTAGTCGTGCAAGGTAAGCGAATACTATTGCCAGTATTTCCTTGCTAGGGGTGTGAATAGAAAAACAATGGGGCCAAGAGTGTAGTTATGGGGCCGTTTTGAGGATCTACCTGACCCAAAAGTTAAAATTTTCTTGTCTTTGTTATTCACAGATAATCCCTCCTTACCTTTACCTTGTGATTGTGTATTCTTTCCGGCACGTGGGTCCATGGCTTTATTAATGATTTGGTGTTGTGTTTTACTTTCTTCCATGTTGTGTGATGCGACTTTAAAGGATTATTATTTTGTTTGTCCCAATGATTAGCATGAATTGTTTTGCCCCATTCTCGTAATCTTAATCGTGATCATGATTGTCCATTAAATGAGTTACCCCAGTATTTCGTGCTCTTCAACATTCAATGCGTCAAATCTCGATCCACCCCATATTGTTTCTTATCAAGTTATGTGCGCCTGCTATGTGCGAATCTCTCTAAGAAGAAGACCCGCCTCTTTTGGGCCATGCTCATTTGCGTTTATGGCCCCATCTCAATATATGACACATCTATTGACTTATCCTCCTCATTAATGTGCATTGGTTTGTTTACCTAGGCCAACGTCATCGTTCCTCGCACACACCTTCCATGTGCCTCCACTCACTGTAAACGCGTCAGAAATTTCCCGCAATTCTCGACATTGGTCTTTTTTGTACCCATATTTTCCAGAATGAAAACAAATAGAGTGAAGACTCATGTACTCCCGATGAAGTTTCACCGTAAGCACCTATGGGATGGTTTAAGTTTTTTCCAAATCTAGTTCCACACAGATTATTGTAAATTTACTCTGATCATGAATCGACGTTAACCTATCCACTAAGTATGGTACCTAACGACGACCTAATTCTCCTTAGAAATTAATCATTTTAGTGCTCCATTGTTTCGAAATTCTTATCGAAACAATGACTTCAAGAGTCAATAAGGTCGCCGGTGAGAAGAAAGGTCTCCATCTCTGCACAATCCGATAATGACCTCCATTAATATCTTTAAGCCTAAATCACCCACGTAATTATGCTTTTTTAGCTAAGGATTTTCTGTTTGGCATCGTACGTTCATTGTATTTACAGTTTTACCACCGCACTTTCTCCTTCTCCATTCAGTCAGTATTCACATTAAAGATTCTTCTCTTCGCTATTATTTCGTTCTCTTCTTTTTTTATTATCCTTTCTTTCTCTCTTCTTTTCAACGTTGAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF14369.9	zinc_ribbon_9	18	50	3.70E-12
PF13639.9	zf-RING_2	205	247	2.00E-11
PF13923.9	zf-C3HC4_2	205	246	2.60E-11
PF17123.8	zf-RING_11	205	233	1.80E-08
PF13445.9	zf-RING_UBOX	206	244	5.20E-06
PF12678.10	zf-rbx1	206	247	6.20E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0061630	ubiquitin protein ligase activity	Molecular Function
GO:0016567	protein ubiquitination	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon

trEMBL

trEMBL term	Description
A0A1S3DVM1	_

SwissProt

SwissProt term	Description
RING1_GOSHI	E3 ubiquitin-protein ligase RING1

KEGG

KO	Description	Enzyme
K11982	E3 ubiquitin-protein ligase RNF115/126	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G19950	RING/U-box superfamily protein
Medicago sativa L.	MsG0680034904.01.T01	_
Oryza sativa L.	LOC_Os10g34590.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa020497	_
Glycyrrhiza uralensis Fisch.	Glyur000399s00017816.1	_
Codonopsis lanceolata	Cl_chr01_24300T	_
Arachis hypogaea L.	AH15G32510.1	E3 ubiquitin-protein ligase RING1 like

Expression pattern