Gene detail

Detail information of Am07G012260.1 Annotation

Gene ID	Annotation
Am07G012260.1	white-brown complex homolog protein 11

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G012260.1	mRNA	Chr07	99108630	99114698	-

Sequences

CDS:

>Am07G012260.1
ATGATGAGAAACAACTCTGAAGCAACTCAAGTTACTATGGAGATAGAAGCAACTAAACCAACAACAACAACGATGAATGAAGTTTCTTCATTACCAAGTTTGAGTCCATTAAGTGAGACCCTTTGGAGAGAAAAAGCAAATACTGAAATCATTGGAGATGTTTCAGCAAGACTTACATGGAAAGATTTAACTGTTATGGTAACTTTAAGTAATGGTGAGACACAAAATGTTTTAGAAGGTTTAACTGGTTATGCTGAACCTGGTACTTTTACTGCTCTTATGGGACCTTCTGGTTCTGGAAAATCTACTCTTCTTGATGCTCTTTCTAGTCGTTTAGCTGCTAATGCTTTCCTTTCTGGTACTATTCTCCTTAATGGTCGCAAAGAAAAGCTCTCTTTTGGAACTGCTGCTTATGTGACACAAGATGACAACCTAATTGGAACATTAACAGTGCGAGAAACAATATGGTATTCGGCTAGATTACGATTACCAGATAAAATGTCACGTTCTGATAAAAGAGCTTTAGTTGAAAGCACGATTGTAGCAATGGGTCTACAAGATTGTGCTGATACAGTTATTGGAAATTGGCATTTACGTGGTATAAGTGGTGGTGAAAAAAGAAGAGTTAGTATTGCTGTGGAAATTCTTATGAGGCCTAGATTATTGTTTCTTGATGAACCAACAAGTGGCCTTGACAGTGCATCAGCATTCTTTGTAACTCAGACACTACGTGCCTTAGCAAGAGATGGAAGAACAGTGATAGCTTCAATTCATCAACCAAGCAGTGAAGTGTTTGAACTATTTGATCAATTGTACTTGCTTTCTAGTGGCAAAACTGTTTATTTTGGCCAAGCTTCTGATGCGTATGAGTTCTTTGCACAAGCTGGTTTTCCATGCCCTGCTCTGAGGAACCCTTCTGATCATTTCCTTAGATGTGTTAATTCTGACTTTGATAAAGTCAAAGCTACTCTTAAAGGGTCCATGAAACTGAGGCTTGAAGGAAGTGAAGATCCTCTTGACAAGATCACAACTGCTGAAGCTATCAGAACTCTTATTGACTTCTACCGCACTTCCCAGCACTCTTATGCTGCTAGACAAAAAGTTGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGAAGCAGGAGGAAGTGAGGCTAGTTTCTTGATGCAGTGTTACACCTTAACAAAGCGTTCATTCATTAACATGTCAAGGGATTTTGGATACTATTGGCTTAGGCTTGTGATCTACATTGTCGTCACTATCTGCATTGGAACTATCTACTTGAATGTTGGAACAGGCTACAACTCAATTCTGGCTAGGGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTTACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTAAATGGACACTATGGTGTCACTGCATTTGTTATCAGCAACACATTATCTGCATTGCCATTCCTGATACTAATCACCTTTCTCTCTGGAACTATTTGTTACTTTATGGTTCAACTACATCCTGGTTTTTCGCATTACGTGTTCTTTGTGCTGTGCCTCTATGCAAGTGTCACAGTGGTTGAAAGTTTAATGATGGCAATTGCTAGTATTGTCCCTAACTTCCTCATGGGTATCATCATTGGAGCAGGAATTCAAGTATGCACCTCCCTATAA

Protein:

Promoter(3k):

>AM07G012260.1
GAATTCAATGTCCACGTTAGTTTGACTTTCATACTTTAGGTCAAGGGATACTTATCAGACTTAGCTAACTCAATTATCACCATACATTATCAAGCCTGGTGGAGAGTATTCACCAACTGAACTTGTCTTCTTAGTCAAGTTTCTTGAAGTAGTAGAATTAGTATTACATGCATACAAAGTAGTAACGATTGAGATTTCACATTGTCATAGTACATGAGATGCCTTGACGACTTGATGCATACCTGCCTATTTATATACCTGCCTATTTATATATTTATGTTGTTTGTTGTTGTTTTTCGTCTACCTTCTCTATCTATACCCCAACACAACATAACTACAATATATTTACCCCCTTTGTTTTGTGTCCTCTTTGTTCTGTATCTATTTTATTTTCAAATGCTCCTCAGACCTAAGTTAAAGGTTAATTTGAAAAAACTTGTTATATTTGAGACTTATGTGTTATTCTATACACAATGCTTTTAGACTTCGACCAGTGGCAGATTCAGGACTGAGATTAGGGAGTTCAAAATTGTGTCGTGGGTGCAATTGGATGCAAACTTAAGAGTATTAGTGCAAATTTAAAATTTTAAAGGGTTCAAAAAAAATATATAAAAAATAAATAAAGCAATTTTTTTTAGGGGTTCAAGTGAACCCCTCAACTACAGTCAGGTCCGCCACCGACTTCGACTCTTGTATGTATTTTCAATCACAGATTTATAAGCTCTGATATATGTGATTGTTTGAGATTTATTTTAAGATTATTTGATATTGAAATAACATATTATATTATCTGTTGTAATAAAATAGTGCCATGAAATATCAATAAAATAGTTTGACACAAAAGTGTTATATTTTTTCAATGCAGGTACATATAAAGAAACATATAGGAGGATACAGGTAATGCAATATTTTCATTCTTATCTGTTAGTATTTAATAACTCAATGAATTCTCCACATCCAACTTCTGCCCAACCTATATACATTAAAAAAAAGATGGGCAAATTTTTTGCTTCTTCTTAGTAGTTGAAGCACCAATGACAAGGATGGTTTTCATTCATGAAAACAAGTATTAATTGGCCCACATCCATATGCTCACTTGTATATCCTCCTCTCAATCAATCTCATCTTTTCAGCCATTGTTGGTTTTCCTTAACAATTAAGGAATGGGTTGTTTAGTTTTACATAGCAATTATAGGCTACATTTTCAGTAGAGCTGTCAATTCGGACCGCTTGGTCTGGCCCGACTTGGTCTATTGGGCCAAAACATGAATGATGGCTGGGTTGTGTTAGCTCAATTGTCTACTAGTCTGTGTTAGTAATCTAGATTTTCTCAATATATTGGGTTGTGGCCGATTGAGCCTAATTTTTAACAAAGGAAACCAATAAAATATTTAAAAAAAAGCGTTATAGTCTGGCCCATTAGTCAATTGGCCGAACTCCGGATTATTCAGGACTTCTTTCCCCTTTCCATAGTGTAAATTCTTTTTTTAGTCTAGCGGTCTTTGACTCCGCTTCGGTGTCCAAGAGTCTGGGGGCTCGAATAATCCGGAGTTCGACCACGAGGTAAGTAAAGTCTGGTTCCAATTTTTTCCGCCTGTTTAGATGGAGTGTTTTAACCACTTACACGCAAATTTGGAGTTGCAACTTCTAAGAAATACATTCCAGAATTACATTTTGAAACATAAATTCATAGTGTAACTTTTAAAAAATACATTCCAGAATTAACTTTAAAATGGTAAATCTGAAAATTACCAAAAAAATTGGTGTCTAATGTAAAATTAGTGAGGGTAAAAATGATATTAAATGAAAATGTAGAGACACGAAATTCAGGTGTGGGGGTACAAAAAATACCAGTTTTTTTTCAAGGTTTCTATTTAGCGAGTCCAACACAACTCTTAACAGTGGACCACGAGGCCTACCCAAAAATTAACACCTCCAATGTTCACACACAGCACATAATTTTTGTGTGTTTTCTGTCGTTGATAAGTAACATAATTTGTGTGTGTCACAAAGGGTGAATGGGAATGGATGGGGAAAGGGTAGATAGAAAGATAAGGGAGGTACATAGTAATAATCATGCACACCTTCCCCGTAGGTTAAATGAGGGTCGGTTTGATATTAAATGCAGCTACCAACAACTATCTGCATACATTAATTGCTTCATATAATGACTGATTTGAACCCCAAACATTGGCTTCTAAATTTCCTTTGAGAACTTTGAGAATTGTGCTAGTGCAAGAATAATGTGTTTTTTGTTTTTGTGGTCATACCCTTTACAACATCAGTTTTTTTCAGAATAGAAATCCAATCACTTCTTCTTATTCATACCAAAAAACAAAACACTTGTTCAGTTATTAATCTTTAACAACAAAAACATAAGTTCTTTTTGCATGAGACATATCATTGATAATCTTCATTTCCTTTCAGTCAAAAATTCTCTGTAACACACTTCCCAAATCATACGTTTCCAATTTCACCACTCACACTTTTTCTTTCCTTCTATTACTCTTCTTTTAGCACCTTCTTTATAGCCTTTTAACACCTCCCCCTTCACACTTTTCCTATTCATATTCCCTTTAAATATACTCTTTTTGTTTCTTTTCTCATTAACTTTTTTCAAATATACCCAAAAAAATCTCTCATTTTTACTTACCCTTTTGGATCAGCTTCAAGAAAAAACCAAAAAGGTGAGAAATTTATTTGAAGAGTGATAAACTCTGAAGAAACTCTTTTTGTTTATTTTCTCAGTGATTCATTAAAATTTCAAAAAAAAAAAATTCTCATATTTTTACTTACCCTTTTGGATCAGCTTCAAGAAAAAACCAAAAAGGTGAGAAATTTATTTGAAAAGTGATAAACTCTGAAGAAACTCTTTTTGTTTATTTTCTCAGTGATTCATTAACATTTCAAAAAAAAAAAATTTCTCATATTTTTACTTACCCTTTTGGATCAGCTTCAAGAAAAAACCAAAAAGGTGAGAAATTTTGAAGATTGATATAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01061.27	ABC2_membrane	391	559	1.70E-25
PF00005.30	ABC_tran	80	229	5.40E-23
PF19055.3	ABC2_membrane_7	258	541	1.50E-10
PF13555.9	AAA_29	90	114	7.00E-07

Gene family

Gene family	Subfamily
Transporter family	ABC

Gene Ontology

GO term	Description	Category
GO:0140359	ABC-type transporter activity	Molecular Function
GO:0055085	transmembrane transport	Biological Process
GO:0016020	membrane	Cellular Component
GO:0016887	ATP hydrolysis activity	Molecular Function
GO:0005524	ATP binding	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR013525	ABC-2 type transporter
IPR017871	ABC transporter-like, conserved site
IPR003439	ABC transporter-like, ATP-binding domain
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A445GL64	_

SwissProt

SwissProt term	Description
AB11G_ARATH	ABC transporter G family member 11

KEGG

KO	Description	Enzyme
K05681	ATP-binding cassette, subfamily G (WHITE), member 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G17840	white-brown complex homolog protein 11
Medicago sativa L.	MsG0480021814.01.T01	_
Oryza sativa L.	LOC_Os10g35180.1	white-brown complex homolog protein 11, putative, expressed
Cucumis sativus L.	Csa003769	_
Glycyrrhiza uralensis Fisch.	Glyur000478s00024539.4	_
Codonopsis lanceolata	Cl_chr02_25050T	_
Arachis hypogaea L.	AH15G34350.1	ABC transporter G family member 11 like

Expression pattern