Gene detail

Detail information of Am07G011870.1 Annotation

Gene ID	Annotation
Am07G011870.1	Ribosomal protein S27a / Ubiquitin family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G011870.1	mRNA	Chr07	96626100	96626567	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM07G011870.1
CATCAATAAGATCTTCATCACCAAAAGATAGTGGAGGTCGGTTTGTAGTGGGCAATGTAGCTGAGGTTAAGGCCACACTTAACAATTCTTTCCACTTTCGCTTCATTGTTTTCCCGGACTCCTCATGTTCGAAACCTCCTACGATAATCATCATCACTGAGTGACCTTTTGATGTTCTATTATCATGATCTTCATTGTCGGAATAGACCTTTGGCTTTTCCTTCTGCTGGGCTCCTCGCTCCTCTCGTTCTTGACCTCGCCGGTATTTTCTCCTGACTTTTTCACATAACCGGACAATTTTCCCCGTTTGATCAAATCTTCAATGTCGTCTTTCAAAGCATTGCAGTGGTTCGTGTCATGACCATTACTTCTGTGATACCGGAAGTATTTGCTGGATCGTTGTCCAGATCGGGGCGCTAGAGATTTGGGGGTTTTAACGTCTCTGAACTCGACATTCCAACATTCCCCATATAGTTGGGCGTTGGATACGTTGAGTTCAGTGTATACTTGGTGACGATTCCGACGTCGGGGGTCCCTGTTACCTCGGTTATCGTTTCCTTGGTTATCTCTTCCGTTGCGGTGTTTTGCTGGTCCGGCCTGTGGTGACGGATTTCTGGTCTTGGTGCTCTCCTCCTCGTTGATGAAACACTAGGATATTTGGAGGAAATCCTGCAAGGTGTTAGGTTCCCAAGTGTTGACAAGTTTTTTGAAAGGGCTTCCGGGGAGCAGGCCCTGCGTCATAAAGAAAATGCGGAAAGTGTCGTCTAGTTCTCGAACTTGAAGAGCTTCTTTGTTGAACCTCTCTATGTATTCCCGAAGAGGCTCGTCCTCCTTTTGGACAACGAACATCAACACCGCTTTGTTTTTGGGTTTACTTTTGGAATGGGCAAAGTGAACTGAAAAGAGTTTGGCCAATTGGTCCCAAGAGGATATGGTGTTCGTCTTTAAAGTTCGAAACCATTCTGATGCTATTTTGTCTAGAGTTAACGGGAAGATTCGGCATTTCATTTCCATGGGTACATTACGGTATTGCATAGTGTTGTCGAATTGATCGAGGTGCCTGTCGGGATCGCCCGTTCCATCATACGTTTTTAGACCTCCAGGCGGTTTTTCGAGGTACCTCGAGACTCGGTAGTTGTCGATTGTCGTACTGAAAGGGCCCTTTCGCTCGGTTAGCCGTGCCTGAGGGCGTGGCCGATGCTGGTGATGGTGATCGGGTTAAACGTAGTGTCGAGGTTGTGCCTTCTCAGGGTTATTCTCTCGACTTCTGGAGCGTCTCCTTGGTGACGAAGAGGCTAGAAATGAGCGAGGCTGGGGAGAGTTATCTAGTTCATTAAGACCGTCATATTGTCGAGCTGGAGGAGAACGGGAACCATTCCCTCGTTGTCGGCGAGGAGGCGATCGATGATATTCATCAAGATCGTCATATTGTCGAGCCGGAGGAGAACGGGAACCATTCCCTCGTTGTCGGCGAGGAAGCGATCGATGATATTCGTCAAGATCGTCATATTGTCGAGCCGGAGGAGAACGGGAACCATTCCCTCGTTGTCGGCGAGGAGGCGATCGTTGATAGTAACTTCTCCTGGGTGGAGATCGATGTCTTCTTCGAACCGGGGTTCTTTTTTCATGGGAGCCTGGTCCGGGTGATTCCTGGTCCGGAACGTCTCGTGCCCGGAGATTTGCTACCCCGTCCTCAAGGTCGGTGAAGCGACAGCTTCTTTCTTGGTTCACGACCTCCTGTCGAGCCAGCAGTTGGACGAGCTATTGAACAGCATCGGTCAGGGCTGGAAGCAATGGAGGGGGAGGTGGTAAACTATTCCTGTATGAGCTCGTATGGGAACGAGCGAGGTTCGGGTTGGGGATTGTGCCCGAGCTTGGGTGGAATTTGTGAGGTTTTGAACATGGTCCTTAGGGGTTTGTTGTGGTTCATGCTCGGGCATAACCAAGCCCACCCCGGGCCTGGTTATGAACGGAGTTTGGGCGCCATTTGTGGATCAAGGTAATGGGAGAGGAGCTTGAGTACAGATTCTCCCACTGTGGTCGCCAATGTTCTGTACCGTACTTCCGAACTTAATGAGTTGTCTGAAGCAGTTGGTAAAAGTCGTCCTTGATCTGTGATGTTCGACCTTGAGATGTCGGTGTTGTACCTACACTACAAGAATTACTTGATTTACTGGCGGTTTCTTTCCGGCGGAATTAATCCGCCTGTACCGTTGCGGCGGATTTTAAGCAGTTAGTGGCGACATTTTTCCCACGAAAGATTTCCGGCGGAAAATGGAGCATTTCCGGCGTAATATTGCGTCGCAAAATTGTTTCAGAAAAACGAAAATTAAAACCGACGGTAATGCATATTACCGGCGATTTTTTGGAGAGGGGGGAAATTCAAAATTTAAAATATCCGTCGGAACGGTTGAAAGAACCGCCGGAAATAATTGACCAAATAAACCGCCGGAACTGTGTCATTACCGGCGGTTTTTGGGAGGAGTGGAAATTCGAATATTTAAAATTTCCGCCGGAAATATTGATGAAACCGCCGCAACTTATGGACCAAATAAACCGCCGGAAATGTGCATTTACCGGCGGTTTTGTGGAAAAGAGGGAAATTCGAAATTTGAATAAAACCGCCGGAACCTGTTACAAAACCGCCGGAAACATGTAGCCGTTTGTAGAATCCGCCGAAAATGGCTTATTCCGCCGGTAATGGTTATCCGTTGCTGGTTTTTGAAAATAGCCGTTGGTAAAATCCGCCGGAAATGGCTTTTACCGGCGGTTTTTGGAAATAGTCGTTGGTCATTCTGAATATATAAATAGACATACGACTATCATATATCTTCATTTCCAATTCATTCATCTTCCCCACTCCTTCATCTTCCCCATTCCAAATTTCTTCAACTCCATTCACTTATCTTTCATCTTTTCCATTCATTCATCTTCCCCTATTCCGAATTTTTTGTTTTCATTCATTTCCTCACTCGGCGCAAACCCTCTCTGTTCTCGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00240.26	ubiquitin	3	74	6.00E-34
PF01599.22	Ribosomal_S27	102	147	4.50E-26
PF11976.11	Rad60-SLD	1	71	2.30E-16

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0005737	cytoplasm	Cellular Component
GO:0006412	translation	Biological Process
GO:0046872	metal ion binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR011332	Zinc-binding ribosomal protein
IPR029071	Ubiquitin-like domain superfamily
IPR000626	Ubiquitin-like domain
IPR019956	Ubiquitin domain
IPR019954	Ubiquitin conserved site
IPR038582	S27a-like superfamily
IPR002906	Ribosomal protein S27a

trEMBL

trEMBL term	Description
A0A834TE70	_

SwissProt

SwissProt term	Description
RS27A_LUPAL	Ubiquitin-ribosomal protein eS31 fusion protein

KEGG

KO	Description	Enzyme
K02977	ubiquitin-small subunit ribosomal protein S27Ae

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G23410	Ribosomal protein S27a / Ubiquitin family protein
Medicago sativa L.	MsG0580025750.01.T01	_
Oryza sativa L.	LOC_Os05g06770.1	40S ribosomal protein S27a, putative, expressed
Cucumis sativus L.	Csa000874	_
Glycyrrhiza uralensis Fisch.	Glyur000706s00025006.1	_
Codonopsis lanceolata	Cl_chr04_27320T	_
Arachis hypogaea L.	AH14G42920.1	Ubiquitin-40S ribosomal protein S27a like

Expression pattern