| Gene ID | Annotation |
|---|---|
| Am07G011550.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am07G011550.1 | mRNA | Chr07 | 95299991 | 95306061 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 253 | 300 | 1.70E-41 |
| PF13041.9 | PPR_2 | 360 | 403 | 1.70E-41 |
| PF01535.23 | PPR | 225 | 254 | 2.60E-39 |
| PF01535.23 | PPR | 256 | 285 | 2.60E-39 |
| PF01535.23 | PPR | 360 | 386 | 2.60E-39 |
| PF14432.9 | DYW_deaminase | 572 | 665 | 5.40E-39 |
| PF13812.9 | PPR_3 | 354 | 402 | 5.50E-17 |
| PF20431.1 | E_motif | 473 | 536 | 8.30E-12 |
| PF20430.1 | Eplus_motif | 542 | 568 | 1.00E-07 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0009451 | RNA modification | Biological Process |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0003723 | RNA binding | Molecular Function |
| GO:0016787 | hydrolase activity | Molecular Function |
| GO:0000166 | nucleotide binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046849 | E+ motif |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A8B8LLN7 | _ |
| SwissProt term | Description |
|---|---|
| PP449_ARATH | Pentatricopeptide repeat-containing protein At5g66520 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G66520 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0280011242.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g02280.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa006474 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001902s00038015.1 | _ |
| Codonopsis lanceolata | Cl_chr05_21920T | _ |
| Arachis hypogaea L. | AH05G21100.1 | Pentatricopeptide repeat-containing protein At5g66520 like |