Gene detail

Detail information of Am07G011410.1 Annotation

Gene ID	Annotation
Am07G011410.1	cleavage and polyadenylation specificity factor 160

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G011410.1	mRNA	Chr07	94304777	94329592	-

Sequences

CDS:

>Am07G011410.1
ATGAGTTTCGCCGCATACAAGATGATGCAATGGCCAACCGGCGTCGACAACTGCGCTTCCGGTTTCCTCACTCACTCTCGCGCCGATTTCGTCCCCCGCATTTCTCCCATTCAACCCGACGATGACCTCGATTCTGAGTGGGCCCCACAACCTCGTGACCTTGGTCCTCTCCCTAATCTCGTTATCACCGCCGCTAACATCCTTGAGGTCTATATCGTTCGAATTAAAGACCAAAGTTCTAAATCCTCTGCTGATTCTCAACTCCTTGACGGCATTTCCGGCTCCTCTCTTGAGCTCGTTTGCCACTACAGGTTGCATGGCAATGTTGAAAGCATGGATGTGCTGAGCATTGGGGGTGGTGATGCACCTAGGGGGAGAGATTCTATCATCTTAACTTTCAAAGATGCAAAGATTTCAGTTCTAGAGTATGATGATTCTATTCATGGACTCCGTACTAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATTTGAAAAGAGGCAAAGAACAATTTGCAAGAGGTCCGGTGATAAAGGTTGATCCTCAAGGCAGATGTGGTGGAGTTCTTGTCTATGATTTACAAATGATAATTCTAAAGACTACTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGATGCATCGGCTTCTGGAGGTGCAGTTGCTGCTCGTATTGACTCATCTTATATGATAAATATGCGTGATTTGGATATGAGGCACATAAAAGATTTTATATTTGTTCATGGTTATATTGAACCTGTCATGGTGATCTTACATGAACGCGAGCTTACTTGGGCGGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCGCTTAGTATCAGCACAACATTGAAGCAGCACCCGCTTATTTGGTCAGCTGTTAGTCTCCCCCACGATGCCTACAAGCTTCTTGCTGTGCCCTCGCCAATTGGTGGTGTTCTTGTAATTGGTGCGAACACTATTCATTATCACAGTCAGTCCGCTTCATGTGCATTAGCCTTGAACAGCTATGCTGTTTCACTTGATAATAGCCAGGAGATGCCAAGGTCAAGTTTCAATGTGGAACTCGATGCTGCCAATGCAACTTGGTTGTTGAGTGATGTAGCCCTGCTGTCAACAAAAACTGGTGAACTGTTATTGCTTACTCTTATTTATGATGGAAGGGTTGTGCAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCTTCTGGTATTGCGACAATTGGAAATTCTATGTTTTTCCTCGCCAGTCGATTAGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCAGGTGTGTCAGTTTTTTCATCCAATCTAAAAGAAGAGGTTGGTGATTTTGACGTAGATGCTTCTTTGGCAAAGAGATTGCGGAGGTCACCTTCTGATGCCTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGCTCTGCTCCAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCATTGAAAGATTTCTCGTACGGTGTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCGAAACAAAGTAACTATGAACTGGTGTGTTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTTCGGCAGTCGATTCGCCCAGAAGTGATTACTGAGGTTGAACTTCCTGGCTGCAAAGGAATTTGGACTGTTTATCATAAAAGCACACGTTCTCTTAATGCTGACTCTTCTAAGCTTGGTGACGATGACAATGAGTATCATGCATACCTTATTATAAGTTTGGAGGCTCGTACTATGGTTCTTGAAACAGCCGATCTTCTGAGTGAGGTTACTGAAAGTGTTGACTATTATGTTCAAGGAAAAACGCTTGCTGCAGGGAATTTATTTGGAAGACGTCGAGTTGTTCAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTCATGACTCAAGATGTAAGTTTTGGCGCTTCTAACTCAGAATCTAATCATGGATCTGAGAGTGCTTTGGCGTTATCCGTTTCCATAGCTGATCCATATGTTTTGCTTAGAATGAGTGATGGAAGCATACGAATTTTGATTGGAGATCCTAGTACCTGCACCATTTCTGTATCTTCTCCAGCTTCATTTGAGAGCTCAAAGGGACCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCTGAGCCATGGCTTAGGAAGACAAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCCATTGATGGCACAGATGGTGCAGCACAGGACCATGGGGATATTTATTGTGTTATTTGTTATGAAACTGGTAACCTTGAAATATTTGATGTGCCCAATTTTAGTTGTGTTTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATCTCGCTGATGCTCTGATGAAAGAGGTGCCGAAAGATTCTCAAAAGGGGGATAGAGTTTCTGATGGAGTGGTTGGCCAAGGCAGGAAGGAAAATGTACTGAATATGAAGGTTGTGGAGTTGGCCATGCAGAGATGGTCAGGACAGCATAGCCGCCCATTTCTTTTTGGGATTTTGAGCGATGGAACAATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATGGTACTTCCAAGGTTGAGGATTCAGTATTAGCTGGTGGGTCTGTTGGCCTTAGCAGTACCAGTGTTTCTAGGCTTAGAAATTTGAGATTTGCTCGTGTGCCCTTGGATGCACATGCCAGGGAGGAGACATCGAATGGATCACCTTGTCACCAAATTAATATTTTCAAGAATATTGGTAGTCATGAAGGATTCTTCCTATCAGGGTCAAGACCGGCTTGGGTTATGGTATTGAGAGAACGGCTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTCCTTCACAATGTAAACTGTAATCACGGCCTCATATATGTTACGTCACAGGGTGTTTTGAAGATATGCCAATTGCCTTCTGGCTCAAACTATGACTGCTACTGGCCTGTACAGAAAATTCCCCTAAAAGCTACTCCGCATCAAGTAACATACTATGCAGAGAAGAATTTGTATCCACTTATTGTCTCATATCCTGTTCCTAAGCCACTAAATCAAATTATTGCCTTGGTTGATCAAGATGGCAGCCTTCAGACTGAGAGTCAAAATTTGAGTTCTGATGAACAAAACCGCTTTTATACTATCGATGAATTTGAGGTTCGTATTATGGAGCCGGAAAAATCTGGCGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAATTTTCAGAAAATGCTCTCACTGTGAGGATGGTTACACTGACGAATTCATCCTCAAAAGAAAATGAAACACTTTTAGCTGTTGGTACTGCTTTCGTGCAAGGAGAGGATGTTGCTGCAAGGGGACGTATCCTCTTATTCTCTCTGGGGAAAGATACTGATAATCCACAAACTGTGGTTTCAGAGGTGTACTCCAAAGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAGGGTCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCATAAGTGGACTGGCACTGAGTTGAATGGTATTGCGTTTTTTGATGTGCCACCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATACTTATTGGCGACGTCCACAAAAGCATATATTTTCTTAGTTGGAAAGAGCAGGGGGCACAACTTAGCTTATTAGCCAAGGATTTTGGTTCTCTTGATTGTTTTGCAACAGAATTTTTGATTGATGGAAGTACTTTGAGTCTCATGGTATCAGATGATCAAAAAAATATCCAGATTTTTTACTATGCACCGAAGATGTCTGAGAGTTGGAAAGGACAAAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGGGCTCATGTGACTAAATTCTTAAGGTTGCAGATGCTATCCACTTCTGATCGAAGCGGTTCTGCTCCAGGGTCTGATAAAACTAATCGTTTTGCCCTATTATTTGGTACCTTGGAAGGTAGTATTGGTTGCATTGCTCCTCTTGACGAAATCACATTCCGTAGACTGCAATCTTTGCAGAAAAAGCTTGTTGATGCTGTGCCCCATGTTGCTGGCCTAAATCCAAGAGCTTTTAGACTGTACCGTTCAAATGGAAAGGCCCATCGTCCTGGCCCTGATAGTATAGTTGATTGCGAGCTACTTTGCAATTATGAAATGCTTCCGTTGGAGGAACAGCTGGAAATAGCTAGCCAGATAGGAACAACTCGATCACAAATTCTCTCAAATCTAGGTGATCTGTCTCTAGGAACAAGCTTCTTGTGA

Protein:

>Am07G011410.1
MSFAAYKMMQWPTGVDNCASGFLTHSRADFVPRISPIQPDDDLDSEWAPQPRDLGPLPNLVITAANILEVYIVRIKDQSSKSSADSQLLDGISGSSLELVCHYRLHGNVESMDVLSIGGGDAPRGRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGKEQFARGPVIKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDASASGGAVAARIDSSYMINMRDLDMRHIKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVSLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSLDNSQEMPRSSFNVELDAANATWLLSDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSGIATIGNSMFFLASRLGDSMLVQFSCGSGVSVFSSNLKEEVGDFDVDASLAKRLRRSPSDALQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGVRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSLNADSSKLGDDDNEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVVQVYERGARILDGSFMTQDVSFGASNSESNHGSESALALSVSIADPYVLLRMSDGSIRILIGDPSTCTISVSSPASFESSKGPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVICYETGNLEIFDVPNFSCVFSVENFMSGKSHLADALMKEVPKDSQKGDRVSDGVVGQGRKENVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVLAGGSVGLSSTSVSRLRNLRFARVPLDAHAREETSNGSPCHQINIFKNIGSHEGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDCYWPVQKIPLKATPHQVTYYAEKNLYPLIVSYPVPKPLNQIIALVDQDGSLQTESQNLSSDEQNRFYTIDEFEVRIMEPEKSGGPWQTKATIPMQFSENALTVRMVTLTNSSSKENETLLAVGTAFVQGEDVAARGRILLFSLGKDTDNPQTVVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFFDVPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRSGSAPGSDKTNRFALLFGTLEGSIGCIAPLDEITFRRLQSLQKKLVDAVPHVAGLNPRAFRLYRSNGKAHRPGPDSIVDCELLCNYEMLPLEEQLEIASQIGTTRSQILSNLGDLSLGTSFL*

Promoter(3k):

>AM07G011410.1
GTTAGAAGAAGCTGAAGTATGAAAATGATCTAAAATTATGTATTTTTTCCTGATTTCTTTATATAATAGTGAACATCTGGTATTGTCGAAGGGTTTGTTTGTTAGAGATTAAAAATAGGTGATCTTGACATTCAATAATTTAGATATTATTTTTGAGATTTTGCAAAGAAGTAGAAATAGTTTTTTGTTAGTTTACCATAATCAAAATCACTTCTTTAATGATCTCTCATCCAACCGGAGAATCTATTCAAAACAACTTCTCATTTTAAGTCGTTTTTAGATTTTTTTAAGATCCTCATATTTTAAAATAAAACTGTAACAAAGAGATGAAATACCCTTAAAAGTGATTATTTAAAAAAATGATTTTTTAAGCAGACAAGTTGTAACAAACGGGCTCAAAGGCTCATCAATTATCAAAATCATTCAGCTTTAGCAGGTTTATAACTTTTAAGCTTCAGCCATTTTCATAGTCTGTTTGAGTCCTAAGTTATGCCTCGGCATCGCTATATCAAAGTAAATGTTTATCACTGCCTAATCTATTTATCTTAACTTGTAATGTTATGTTCTTGCAATGTTGATCTTTATATTGCTTCCTAATATTATTTACTTTTTGATGTTTTTCTTTTTTGAATTTTCTAAAATTACGATATAAAATGCAGGTGAAGAAGGGGAAACAAATGTGACTCATTTACTTCTAGGAATTTGGTCACAAGAAGAATCAGCGGGTCGAAAGATCTTGTCAACTCTGGGTTTCAATGACGAAAAAGCCAAAGAAATTGCTAAAACAGCAGTAAGTTTCAAGTTCTTCTAACACCTTATTCATTTTGGCTTGCTGATTAACTCCTCAATGGGAAATGAAATATGGTTTGTGTTTTTTGTAGACTAGTGGAGATATTGATTGGAGATTGAAGAAGAAAGCTTAAGAAGTTCCTCTAGGGAAAATTGACTATACTCTCTCCATCAAGTTTATCAACCAGTGCCTACATTAATCCTTTTAGACTAAAATGTCAAATGCTGTGTTTCAGTGATTGTAATGTAGATGATGCATTTTTGTTATTCTTTTTATACAAATTCTCCGGAAGTCAAATTTTAAAGCAGTGTTTTGTGGTGGAATTGGAGTCTCACTCTCTGCCTTTTCTCTCCCTTGTAATGTTATCAACCTTTTTGAATGAGTTTTTATGTGTACCATTTTCTTAAGAGCTGGATCTTTTCACCATAAAATTAAATGTAAGGAACCCTCAAAAGGTCTTATGATAAAAGAAATAATTGATTTGTTTCATGTATCAGCCAAGATAACATAAACTAGACAATTGCTGCTGGTGGGGTTTTATTTAAAGCTTGCTATTTACATATTCTTTTATACAAATAGAATTTTGGGTGGGTAGAATTGATTTAATGGATTTTATTTATATCATTCAAATGAAATTATTTTTTCTGAACCCCCAAAATAAAAAAAAGTTAACACATTAATTTTTTTTTTAAAACAATTCAGTTGGAATTAATTATAGAAAATAAATTTTATCACAATCTAAAAACATTGACCGAGTAGTCCATTTCTTAATAAGTCAATATATTTTGGTTAAAACTAATTATTTTATAATACACATAATGTACTTTACACCGCTTAGCGTTGCACTATACATATTTTGTCATAAAATTATTTCTTTTCCACCAAACTTGCTATTGAGAAACGAATTTTGCATATTTAATAGTTAATTTTTTTTCAAACCCTAAGGTACCAAAAAACATAATGCTTAGCGTCGCACTTTACATACTTTATCACGAAATTATTTTTTTCACCAAAACGATTTGTGAGGAGCGAACTTTGCGTATTTGAATAGTTAATCTTTTTCCGAACCCTAAAGTACCCAAAACACACTACTTAGCGTCACGCTTTACATATTTTATCACGAAATTATTTTTTCACTAAAACAATTTGTGAGGAGTGAACTTCGCGTATTTGAATAGTTAATCTTTTTTCGAACTCTAAAGTACTCAAAACACACTACTTAGCGTCGCACTTTACATATTTTATTACAAAATTATTTTTTTCACCAAAATAATTCGCGAGGAGCGAACTTCGCGTATTTGAATAGTTAATCTTTTTCCGAACCCTAAAGTACCAAAAACACACTACTTATTGTTGCACTTTACGTATTTCTTCACAAAATTAATTTTTTTTACCAAATCGTGCTTCATAGGTTGTAATGTTACCAAAATGCCCCTCTAAAGTATGACAGACCATACTTAGAATGATTTTATTTTTTAACTAAAAAGAAATAAAAAATAGTTGATAAATAAAAGAGGCAACCAAAAGTTGGCGCTTAGGTATTATTATTATTATTATTATATGTTAAATCATATACTTGCAGACCTTTTCAATAATTTAAACATATTAACCTAAACATCTTTTTGACATATTCAATAGTTCTATTGCAAAATAGAAAAGCCAGCAACACTCTCTTCATTAAATTTTTAAATCTATTTAAAATTCCTTTAAAATTTTTAATTTATTTGCTTTTGAATATATATTTGTAGTTTTTCATTTTTTGAGTACTATTTTTATTCTCTTTATTACATAATATTATCTTTATTTCTGGTATTGTATCATTTTCCAAAAATACTTTTTCTTTCCTCTCCCTATTTATTCAATCAAACGAAGTAGTAAAAGGTTTCTACAATTCTTTCCTTCCACTTTCTCTCCCACAAAAACAATCAAAACATCCTTTCACTTTCCTGTATCTTTCTTTCTTTCTCCTTACTTTTCCATTACCTTTATTTCCTCTCATCTTCTCCCCTAAACCAAACAAAGTGTTAATCTTTGCACCATGTACCAGAAGTAGATTTGAGAGAGAGAGACATCAAAACACAAACAGTGAGTGTGATATAGAAAATTAAGAATCAGAAAAATCCTCACTCCCGCCAAACTCAAAAGCGAAACCCTAATTTAGGGTTTAAGCTCACTGAGAAACACTTCCATTTCTCATCTCCAAATTCACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03178.18	CPSF_A	1083	1415	7.20E-87
PF10433.12	MMS1_N	127	682	6.40E-37

Gene family

Gene family	Subfamily
Ubiquitin Family	DDB1
Ubiquitin Family	DDB1

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR018846	Cleavage/polyadenylation specificity factor, A subunit, N-terminal
IPR004871	Cleavage/polyadenylation specificity factor, A subunit, C-terminal

trEMBL

trEMBL term	Description
A0A9D5BJ97	_

SwissProt

SwissProt term	Description
CPSF1_ARATH	Cleavage and polyadenylation specificity factor subunit 1

KEGG

KO	Description	Enzyme
K14401	cleavage and polyadenylation specificity factor subunit 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G51660	cleavage and polyadenylation specificity factor 160
Medicago sativa L.	MsG0680034125.01.T01	_
Oryza sativa L.	LOC_Os04g18010.1	cleavage and polyadenylation specificity factor subunit 1, putative, expressed
Cucumis sativus L.	Csa012265	_
Glycyrrhiza uralensis Fisch.	Glyur000859s00026225.1	_
Codonopsis lanceolata	Cl_chr03_48840T	_
Arachis hypogaea L.	AH05G20980.1	Cleavage and polyadenylation specificity factor subunit 1 like

Expression pattern