Gene detail

Detail information of Am07G011260.1 Annotation

Gene ID	Annotation
Am07G011260.1	DEAD box RNA helicase (PRH75)

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G011260.1	mRNA	Chr07	93408425	93413461	-

Sequences

CDS:

>Am07G011260.1
ATGCCTTCACTTCCAATCTCCAACGGCGCCGTTTTAAACGAGAGTCCAATCTCCAAAGACAAATCAATGAAGAAGAAGAAAGAGAAGAAGAACGATAAATTTCAAAACGACGCCGTTTCTGAGATCGACGCCCTAAGCGCGAAGGGCAAAAGCAAGAAGAGTTCGAGCAAGAAGCGAAAGAAGAGTTCTGATGAGGAAGAGGATGAAGAGAAGAGTGATAATAGTTCGGAACTTTTGGATGATGGTTCTAAGATGAAAGCGAAGAAGGAGAAGAAGAAAGCTAAGGTTGTGGAAGTAGAAGAAGAAGTGATTGTTAAGAAGAATGATCCGAATGCGGTTACGAATTTTAGAATTTCGGAACCGTTGAGGAAGAAATTGCAGGAGAAGGGGATTGAATCGTTGTTTCCCATTCAGGCTATGACTTTCAATACTATCCTTGATGGTTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAAACACTTGCCTTTGTGTTGCCCATATTAGAATCTTTGACAAACGGTCCAGCTAAAGCAGTGAGAAAGATGGGCTATGGGAGGTGTCCAAGTGTTATTGTGCTCTTACCTACTAGGGAACTGGCTAATCAGGTGCATGCAGATTTTGAAGTTTATGGTTCATCATTGGGATTGTCTTGTTGCTCTTTATATGGTGGAGCTCCGTATGGTGCTCAAGAGATGAAGCTCAAGAGAGGTGTTGATATAGTTGTGGGAACACCTGGTCGCATAAAGGATCATATCGAGCGGGGAAATATTGACCTGAGCCTACTACAGTTCCGTGTTCTTGACGAAGCTGATGAGATGCTGAGGATGGGCTTTGTTGAAGATGTTGAACTCATTCTAGGTAAGGTAGCAGATGTTACTAAAGTTCAGACACTTCTTTTCAGTGCTACTATGCCAGACTGGGTTAAACAACTTTCTATGAAATTTCTTAAACGTGATAAGAAAACTGTCGACCTTGTTGGGAATGAGAAAATGAAGGCTAGTACCAATGTTAGGCATATTATCCTTCCATGTAATAGTGCTGCCAGGTCACAGCTTATCCCTGATATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATCATATTTACTGAGAAAAAGGAGTCTGCCTCTGAGCTTGCTGGAGTGTTGCCTGGAGCCAGAGCTCTCCATGGTGACATACAACAATCACAACGAGAGGTTACTTTGAGTGGTTTTAGGTCTGGAAAATTCATGACACTGGTAGCCACCAATGTTGCAGCCAGAGGTCTAGACATTAATGATGTGCAGTTGATTATCCAGTGTGAGCCCCCACGGGATGTAGAAGCTTATATCCATCGATCTGGACGGACAGGAAGAGCTGGCAATACTGGAGTCGCTGTTATGCTTTATGATCCCAGAAGGTCAAATGTATCCAAAATAGAAAGAGAGGCAGGTGTGAAATTTGAACATGTGTCTGCTCCTCAGGCGGATCAGATTGCTAAAGCTGTTGGTGGAGAAGCTGCTGAAATGATTACTCAAGTGTCTGATAGTGTGATTCCCGCATTCAAATCTGCTGCTGAGGAGCTTTTGAATAACTCTGGTTTATCAGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGACTGTTGGTTATACTGATATAAAGAAAAGGTCACTTCTGACTTCAATGGAGAATTATGTTACATTACTTCTTGAGAGTGGAAAACCTATCTACACCCCATCCTTTGCATTTGGAATCCTGAGGAGAGTCGTGTCTGATGAAAAGGCTGATGCAGTGCAAGGTCTTGCTCTCACTGCAGATGGAACTGGTGCTGTTTTTGATGTACCAGCCAAGGATTTGAATGCATTTCTTATAGGTCAAAAGGATGCTGCTAATGCAAGCATTGAGGTGGTAAAAGAATTGCCACCTTTGCAACAAAAAGAGCAATCAGGTGGTGGCCGCAGATTTGGTGGTGGCCGTGGATTTGGTGGGAGTAGGTTTGGAGGTGGAAGAGGAGGAGGTGGCAATAGGTTTGGAGGTGGTGGAGGCAGAGGAGGTGGAAAGAGATGGTAA

Protein:

Promoter(3k):

>AM07G011260.1
ATCCTTCGATCCCCCACTTCTGCTATGCTGACTGATTGTCAAGGTTGGAGACATAATGGCCTGAGACATACTGCCACACAAAAACATTATGCCCATAGACTATTAGATATACTGTCAATAGATTTATAACCAATATAACAACATGGTTTGCTAACTACTTAATCCAACCAGATATTTGACAAAGAATAGTTTTCCTATATTTTCTGTGTCTACAAAATTAATATAAGTTGTATAAGTCGTATGAATACATGTATAAAAGTGTTATCCTCTATGCATAATGAATTGTACATATCCACTTCACATTTAGTTTTCAACCATATGAGCATACAGTATAAGTTGTTTCTTCATAAAGTCATCTAAAAATCAAATTAACGATGTTAGAAAATCTAATTTTTACTTACGTCTCTTTCAACGCAGTGGCTTCCGGTATTGCTGGGTTGATCAAGATTTTTGTCGTGTGCATTGTTGTTTGAATTGATATACCCTCTATATAATGGATGAACAGGAATATTAATACCAGTTGATATTATTAATTCTTTCATTAGTTAATGAATCTTAGTAGTATAAGAAGCTTCGAAATACATACGCTGCCATGTGTCAACTTTGCAGTACAAAAGTGCCAGAACAACATTGCTTGCATCGCCAGATGAGATGAATTGGTTAATTTGCTTAACATATTCTCCGAAAAGTGTGACGCTGAAACGGTAACTGCAATCCAATATTTGTAACCAATAATATTTTAAACATATATAATATCAAAAGTTGAATTTAGTTTTAATGTTCAAGTGCATGATTCTAAATTTAAGGATAAATAGAAAATTCCACCAACCCTCGATTATCAAGATCTATCTTCATTCTAGAAGATTTGCCTGATGGTTTAGTGAACTCATACTCTGGTCCAACACCAATAAGAACACCAGCGACATCTACAATATAAGAATGATAGTGATCATGTCAGTGATAATGAATAATCATGATATTAATAATGATAGGTTTTATTTCTTTCTGCCCCCGTAGAATCAAAATAATTGGAAAGACACCAAACCAACTAAGTAATCCTGATTAAAGCCCTTGTCGAAGCACTCTGCCGGTGGAGTGAACGTGTATTCAGGATCCAGGACCATGTCAGCACGTGCAGCAGGCCGTATAATGGTCTTCAAATTGATGTTTAGCCTATAGTTGTGCCTTGTTGCGCGAAACTTGCCAACATTCAGTGCAACAACAAACTTTGTTATCAAATAGACATGACCTTCATGTAGGTGTTTGTCATGCTTATATATGTGCATTTTGTCTATATGACCTTGTATTTTCGTACCCTGAAATATCAAAGAAAATGATAAACATATGCTTAATCTGAATCACAACATAAGGATTTAGAAACTTTGCGTAACCATATTGTTTAATGTAATTTTGAGACTCTAAGCAAATCTATATACCTCTGCATCGGCGAAAACCATCTCAACAGCAAGAGGTGAGTCACCTCCATATGAAGGAAAGACATGCCATTTTCGGAGAAGTTTGACCATTACTGAGGAGGAGTCGTTGGCTGGTTCGATTATGGCCAAAGCTTGAACATTTTTGGGAACCCCAGGAGTGACTTTGGAGGAGGACGCCATGCGTTATTCAAAAGTTTTAGTTGTAGGTATCACTGTTTTAGCTTTTGTTCTAGGTTATACTTTTTGCTTAAACGAATGATGTATATATTCTGGTTTGTGTGTGATTTTGATAGTTTAGTATTCTGATACGCCTATAATTTCGTCAATTTATGATTAATGGAAATTAATGTTGTTCTCATTTCATTGTTACATCTGGATGAGGACAGTGAGGACCATCACTTGACTGTGCCTATGATTGAGCAAAATCAATAATAAATTTCAGAAACCTTAAAATTCGGTGGCATTTAATCTAAAACCGGATATTATGGAAAAATTTAAGGTTTGTTGTTTTGCTTTTGAAAAGCAGTAGACCGATCTTAAAGTGAGAAGGAAAAACAAAATTAGGGTCAGTGTCGTACTTACATTTGAGGCCACCGCTTACGGTGGCCGTTTACCGCAGTCAGCCGTTTGTAGCGAACACAGTCGGGTTGCTCCTCTAAACCACCGTGGACAGCAGATCGCCGTCGCGATGCTGCTCCCTTACTCCCACCGTCGAAATCCCTCCTCCCTTTAACCATATTTGAGAAGATCAGCTACGTAGCAGTGGTACGCTTCCTCAATCCACGTCGCCGTCCTCTCTCTCTTTTACTACGCGAAAAATATGGTTAAATGGAAATCACGATCCTCACTCTCTCAGATCGCGAAAATCTCTCTCTCCATGAAGGCAGGCGGAGATAGCGAACCTTCGCAGCGTGTGGCGAAGAAATCTCTCTCACTCATCTTTTTCGCTGAAAACGGCAATGCTTAAAACAGAGAAATAAAAGCAAACCTCATTTAACCTAAACGTGTTGTTGCCAAGACCTTTTAAAAGTGCGGACGTGGAATTCTTAGAAGTATGACGTGTTTTTACACGTATTTTTGAGATGGACGGTGACTTGTAACATCTATGGTTTAGTATAATTAAGATTGGCCCCCTCACACATATTTTCAATTTTTTGTGAGAAAATTGAAAACCTAATGAGAGGTGTAAATTATCAAAAAAGTGGGTGTGTTTATTAATTTCATTCTTGGAGCTCGAAAAAATCGGCTCACGAATCACAAAAGCCCAAATCCAATTGACCAAGAAAAGTCCCCAGATATTTTCTGAACCGAAACACGAGACATGTGACTGTGAGTGAGAGCTGCGACTACGAGGGTTTGAGGTTATAAATCAAACGGCTATTATTCAACCAAAATAGGGTTTCGAAATCCAACGGCAAAGAATCAACCTCAAAACCTTTAAAAGGCCAAAACCCTCGCGTAGCTTTTCCTCTTAACTCTCCTTGCTTCCGCTGCAACTTCAAGTTACAGCCACCGAAGCAGGAGAGAAAAACGCGCCGTTTCATTCATTCCATTACACGCCGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	135	313	3.10E-45
PF08152.15	GUCT	545	640	1.80E-28
PF00271.34	Helicase_C	358	456	6.40E-25

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0140096	catalytic activity, acting on a protein	Molecular Function
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR035979	RNA-binding domain superfamily
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR012562	GUCT
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site

trEMBL

trEMBL term	Description
A0A1S2YKT4	_

SwissProt

SwissProt term	Description
RH7_ARATH	DEAD-box ATP-dependent RNA helicase 7

KEGG

KO	Description	Enzyme
K16911	ATP-dependent RNA helicase DDX21	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G62190	DEAD box RNA helicase (PRH75)
Medicago sativa L.	MsG0680034061.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa012395	_
Glycyrrhiza uralensis Fisch.	Glyur000867s00025580.1	_
Codonopsis lanceolata	Cl_chr03_19440T	_
Arachis hypogaea L.	AH05G20890.1	DEAD-box ATP-dependent RNA helicase 7 like

Expression pattern