Gene detail

Detail information of Am07G010480.1 Annotation

Gene ID	Annotation
Am07G010480.1	cyclic nucleotide-gated channel 18

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G010480.1	mRNA	Chr07	87040887	87046029	+

Sequences

CDS:

>Am07G010480.1
ATGTATAGAAGAATATTAACTACGCCGGCATCAAAATTTCGCCAATTCCGGCGACTAAGATCTAAACCTTCAACAGAAGAAGAACAATCTTCATATATATTATGGCGGTACCAGATACTGGACCCAGACAGCGATATTGTTGCTTATTGGAACAAAATTTTCCTTGTTACAAGTCTTCTTGCACTTTTTATAGATCCTCTGTATTTCTTCCTTCCTACAGTTGGTGGACCCGCTTGCTTGACCGCCAATGGGAAACTTAGAATTTTTTTAACGGTTTTAAGAACTTTTGCGGATATGTTTTATTGGCTTCATATGATTATGAAGTTTCGTACTGCTTTTGTTGCTCCAAATACTAGAATCTTTGGTCGTGGTGACCTTGTTATGGATCCTCATCAAATTGCTATGCGTTATTTGAAATCAGATTTTGTTATTGATCTTGCTGCTACAATTCCACTCCCTCAGATTGTTATTTGGTTAGTGATTCCAGCTAATAAAAAATCAAGAACAGATCATGCCAACAGCACTCTTGCACTTTTTGTTCTTATTCAGTATGTCCCTAGGCTCTTTCTTATCTTTCCTTTGAACGCACGTATTCAGAAAACTACTGGTGTTATTGCCAAGACTCCTTGGATTGCAGCTGCCTACAATCTTGTTCTTTACATGCTAGCAAGTCATGTTACGGGAGCGACTTGGTACTTATCGTCGATAGGGAGACAATTCAATTGTTGGAAAACACAATGCGAGCAAGAAAATAGATCGCATACACTCTCTTGTTTGCCTACTTTTCTTGATTGTAATAGTGCGGATCTTCCTGAAAGACAATATTGGTTGAATATCACTCGTGTTATTAGTAAGTGTGATGCAAAGAGCCAGATTAATGTCAAGTACAAGTTTGGAATGTTTGCAGATGCTTTCATCAATGATGTTGTCACTTCCAATTTTAAGGAAAGATATTTCTATAGTCTTTGGTGGGGTTTAAGAAACTTAAGCTCTTATGGACAAAATTTGGACACCACAACATACCTATTGGAGACACTATTTTGCATAGTCCTCTGCATTGCTGGATTAGTTCTATTCTCACTATTGATTGGAAACATGCAGACATACTTGCAATCAATGTCGGTTAGACTTGAAGAATGGAGGATTAGAAAAAGAGATACAGAGGAATGGATGAGACATCGACAATTACCTCAAGATTTGCAAGAACGTGTTCGTCGTTTTGTTCAATATAAATGGCTTGCAACTAGAGGAGTCAATGAAGAGGCTATATTGCTTTCTTTACCTTTGGATCTTCGTCGTGAAATTCAACATCATTTGTGTCTTTCTCTAGTGCGCCGTGTCCCATTCTTCTCACAAATGGATGATCAACTCCTAGATGCAATATGTGAGAGACTTGTATCATCACTAAGCACAGAAGGAACATACATATTTAGAGAAGGTGATCCAGTAGATGAAATGTTATTTATAATTAGAGGTCAATTAGATAGTTCAACAACAAATGGTGGAAGATATGGATTCTTCAATTCAATAAAACTAAGACCAGGTGATTTTTGTGGTGAAGAATTATTAACATGGGCATTATTACCAAACTCAACTCTCAATTTACCTTCATCAACTAGAACAGTTAAAGCATTAACTGAAGTTGAAGCATTTGCATTACAAGCTGAAGATTTAAAATTTGTTGCAAGTCAATTTAAGAGATTACATAGTAAGAAACTTCAACATGCTTTTAGATATTATTCTCAACAATGGAGAACTTGGGGTGCTTGTTTTTTACAAGCTGCTTGGAGGAAATATCAAAAGAGGAAAGCTACAAGGGAATTGTCACTTAGAGAAAAAGGGAGTAGTAGTTATTATAATGTAAGAGATGATGATCATGAGATTTATGAAGAAGGGTCTTCTAGTGGGAATAATGATGGTAAAAATGTTAATAATTTTGGTGCTACTATTTTGGCTTCGAAATTTGCTGCTAATACTAAGAAAGGGAATCAGAAGATTCAAGCTGATCCGGTTCCTCAGTTGTTTAAGCCTGATGAACCGGATTTCTCTATGGACCCATGA

Protein:

Promoter(3k):

>AM07G010480.1
TCAACCTTCTTCAGCTCATTCATCTTTTTCTCCCATGCTTGGTAATATGTTGCCTTTGATGCCCCCATCACGAGGTCTCTAATGATAGTCCCCCCACCAAACTTCTTCTTGCAGTTTGCATACAAATGCATAACACATAACCTATGTTCCAATCCCATCTCCTCAAACACTTGTATCAAACCCTAAGCATAAACAAAATTGTTAATAGGTTAGACAAGATCCATTAAATACAAGGTCAGAAATAGATTGACAAGATCCATTAAATTGTATCAATAAATAGGTTGACATTACCTTCTGTTGGTCTGAAATAAAGACCCATCTCTTATCTTGACCTATGTCCTCCAGCAACAAGGTCAGAAACCATCTCCAGGACTCCTTGGTTTCTGTTTCAATAACCCCAAAAGCTAGTGGGAAATATTCATCATTTGGATCTCTCCCAACAGCTACTAGAAGCTGTCCATCAAATTTGGTCTTCAGATGACAGCCATCTACACAAATAAATGGCCTACAACCCATCACGAACCCCTTCTTGCACCCATCAAAGCAGAAATAAAATGACCCAAACCTTGGCTGTAGTGTTGTTATTGGTCTGATTAGCTTAATCTTGCATGTATTTCCAACATTTACCCTCTGCAATTCTGTTGCATACCTCCATAACAGAGAATATTGTTCTGCTGCATCACCTTCAACTAATTGTTCTGCCATTCTTTTAGCCCTCCAAGCTGTACCAAATGTTATTCCAGCCTTGTACGTTGCCCTAATTTCAGACATTATGTCTTTCACCTTTACACTGTCAGTAGTTTTTTACCTTTTGGCCACTGTTTTGGCCACCCACTTTGACCTGGCATTTCTATTATTTAAGACCCTAGGACATGTGTGGGCCCCCACCCAAGTTTTCATTCTAAAAGTTTGTTTATACCCCACCTTACTAACAAGTGCCTTAAAACCACATTTGACCTTACATTCTACCCTCACCCTTTTACACTCATTTTTGACAAAGTTTATCTCCCTCCCGTTTAATATTGTCCACTCTCTAATTGCATCTCTAAACTTCAAGACTACCAAATTCTAAACCAACCTTAAACTTGTAATCTTTGTCAAGCTCCTCTGGCCTAAATCTCTCATATTTTGGATGGTACTTTCTGTCATCATTTTCTTCATCTGGGTCACTACTGGCCAACTCCTCAGTCATGTAGCCAGCATCTAGTTCACCCACATCCTGAACATTGGCACTAGTACTTGCACGATTACTCTTATTTGGTGTTCTGTTTGCCCTAGCTTTTACCCTGTAAGGGGTGCCATTTATGACAATTCTTGATCCACCTGATGATAAAATTGATGCTGATGGAGCTGTAGGTGGTCTATGATCTTCCTCTTCATGTCCACACCCATCATCTTTGCCCATTGCTCTCTCTTCCTCACTGTCATCCATATGAATACCCTTAAGTCCATCTTCACTTTCTTCCCTCTCACTTTCTTCCCCTTTATTCACTGCCTCAGTCCCTTGAGTTCCTTCATTTGCATCTGTTGAATAGCTATATTGCTCAAAGTGCTCAGTGTAGATATGAGCATCAACTTTATTCTTCAATGCATACTCAGCTATTTGTAATGCATCATCATCAGACAACAATCTCTTAACCAATTCATCTTCCTTACCTTTCCACCATAGTCTATAACTACCAGATTGAAACCCTAAATCCTTCAAGATACCAACAGCTTCAAAGTATGACCATTTATCAACATCTAGACCTGCCACTGATGACTCATCGCCCCCTTCATACTCAAGTATCAAATTCTGAACAAACTTCCCACCGTAATGAAACACAACAGTAAAAGCCATCACTGTAAAAACAGAACAAAAGGGCTAAATTAGACATTTCAACCTTACATTATAGACCTAAAATAGACATTAACACAATAACAACACTACACCCAACATATTCGTCCATGTAATACACAATGGTCAACACAAAACCCAACACAATCAATATTCGTCCCCCAACCCCAAAAAATTTCTATACTAAACTCTGAAAAGTGCAATGATTACTGCATGTGCAAACCTGAGCTCTATTCTCTTCGTCAACCCCTTCTCTTCGTCAACACCAGCTACTAATCTTCGTCTTCGTCCTTAGTTCCTTTACCTTCGTCTTCCCTAATGTTTCAATCGTCTTCGTCAAATACCTTCGCCATCGTCACAGAGATATGAAGGTGAGGTGAGAGAGAGGTGACACTGCTGCTGAGAGTGAGCTGAGAGAGTGATGAGGTGAGTGTGTTCAGAGGAGAGTGATGGCAGTGTTCAGAGTGAGAGTGATATTTACACGTGTACTGCCACGTTTAATGCCAACTCAGCGTAAGTTAACGCTGTTAACAAAATTTAACAGCAGGGACCTAACTGCAACCACTTTGTATTTGCAATGTTTGTTTTAAAACTTTTTTTTTTGCAGGGGGGTAAATGGATTATGGTGATATTTGCAGGGGGTAAGTGATAATTAAGCCTTATTTTTATAATGTAATGAAAAAAGGCTTAAACTGAAACTTCGCTAGAAGCTAAAAAACCCAAAAATGCAGTTTAGTCATTTTTATATTATTTTCTATTTATATATTCAAATATTATAATTATATATATAGATAAATTGCATAACACATTAGTGTTATATAAGATTTCTATTTTCTCACCCATTATTCATTCACACATAGAAAGAAAAAGAATTTTGTGTGTTGTTCATTTTCCTATGTTCACGCATTTCCTCAGAGTTTCCCGCGAATTTCTCAACTCTAAAAAATGGCACCCATCCACAACATCATCACCATTCTCCTCCTCTCCCAATCTCCCTCCCACCATAACTCACATTATTCTTCTTCTTCTCCACAAAACAAAAAGCAAAACACTATTTCCACCTCCTCATTCCTTATACAACCCCCAATTCCCATTCATCATCCACCCCACCCCACTCGGCGGTCAATCATCGCGGAATCCGTAACCGGAATCCGCAATGGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	49	376	4.20E-28
PF00027.32	cNMP_binding	472	560	9.70E-09

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0015079	potassium ion transmembrane transporter activity	Molecular Function
GO:0006874	intracellular calcium ion homeostasis	Biological Process
GO:0006816	calcium ion transport	Biological Process
GO:0015085	calcium ion transmembrane transporter activity	Molecular Function
GO:0030552	cAMP binding	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0A9D4XME0	_

SwissProt

SwissProt term	Description
CNG18_ARATH	Cyclic nucleotide-gated ion channel 18

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G14870	cyclic nucleotide-gated channel 18
Medicago sativa L.	MsG0780037699.01.T01	_
Oryza sativa L.	LOC_Os02g54760.1	cyclic nucleotide-gated ion channel 14, putative, expressed
Cucumis sativus L.	Csa009217	_
Glycyrrhiza uralensis Fisch.	Glyur000915s00038247.1	_
Codonopsis lanceolata	Cl_chr05_05700T	_
Arachis hypogaea L.	AH16G32800.1	Putative cyclic nucleotide-gated ion channel 18 like

Expression pattern