| Gene ID | Annotation |
|---|---|
| Am07G009900.1 | cleavage and polyadenylation specificity factor 100 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am07G009900.1 | mRNA | Chr07 | 82941470 | 82949126 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF16661.8 | Lactamase_B_6 | 22 | 188 | 2.90E-54 |
| PF13299.9 | CPSF100_C | 645 | 736 | 1.50E-23 |
| PF10996.11 | Beta-Casp | 242 | 365 | 1.70E-19 |
| PF07521.15 | RMMBL | 533 | 583 | 9.20E-12 |
| PF00753.30 | Lactamase_B | 19 | 205 | 1.30E-07 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003723 | RNA binding | Molecular Function |
| GO:0042500 | aspartic endopeptidase activity, intramembrane cleaving | Molecular Function |
| GO:0005737 | cytoplasm | Cellular Component |
| GO:0016020 | membrane | Cellular Component |
| GO:0035194 | regulatory ncRNA-mediated post-transcriptional gene silencing | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR001279 | Metallo-beta-lactamase |
| IPR035639 | CPSF2, metallo-hydrolase domain |
| IPR027075 | Cleavage and polyadenylation specificity factor subunit 2 |
| IPR025069 | Cleavage and polyadenylation specificity factor 2, C-terminal |
| IPR022712 | Beta-Casp domain |
| trEMBL term | Description |
|---|---|
| A0AAN9F921 | _ |
| SwissProt term | Description |
|---|---|
| CPSF2_ARATH | Cleavage and polyadenylation specificity factor subunit 2 |
| KO | Description | Enzyme |
|---|---|---|
| K14402 | cleavage and polyadenylation specificity factor subunit 2 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G23880 | cleavage and polyadenylation specificity factor 100 |
| Medicago sativa L. | MsG0180002431.01.T01 | _ |
| Oryza sativa L. | LOC_Os09g39590.1 | metallo-beta-lactamase, putative, expressed |
| Cucumis sativus L. | Csa008661 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000827s00023993.1 | _ |
| Codonopsis lanceolata | Cl_chr03_47780T | _ |
| Arachis hypogaea L. | AH15G36270.1 | Cleavage and polyadenylation specificity factor subunit 2 like |