| Gene ID | Annotation |
|---|---|
| Am07G008820.1 | cold shock domain protein 1 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am07G008820.1 | mRNA | Chr07 | 71650739 | 71655904 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF17919.4 | RT_RNaseH_2 | 670 | 746 | 1.10E-24 |
| PF00078.30 | RVT_1 | 547 | 624 | 1.70E-17 |
| PF17921.4 | Integrase_H2C2 | 860 | 917 | 4.10E-17 |
| PF08284.14 | RVP_2 | 309 | 375 | 2.90E-16 |
| PF17917.4 | RT_RNaseH | 695 | 746 | 3.00E-13 |
| PF03732.20 | Retrotrans_gag | 81 | 177 | 7.40E-13 |
| PF19259.2 | Ty3_capsid | 35 | 196 | 2.40E-08 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
| InterPro term | Description |
|---|---|
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR036397 | Ribonuclease H superfamily |
| IPR041577 | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR000477 | Reverse transcriptase domain |
| IPR005162 | Retrotransposon gag domain |
| IPR001584 | Integrase, catalytic core |
| IPR041588 | Integrase zinc-binding domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| trEMBL term | Description |
|---|---|
| A0A396I557 | _ |
| SwissProt term | Description |
|---|---|
| TF26_SCHPO | Transposon Tf2-6 polyprotein |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G36020 | cold shock domain protein 1 |
| Medicago sativa L. | MsG0480022838.01.T01 | _ |
| Oryza sativa L. | ChrUn.fgenesh.mRNA.51 | expressed protein |
| Cucumis sativus L. | Csa019435 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001705s00034729.1 | _ |
| Codonopsis lanceolata | Cl_chr06_01380T | _ |
| Arachis hypogaea L. | AH12G26480.1 | Transposon Ty3-G Gag-Pol polyprotein like |