Detail information of Am07G007950.1 Annotation
Gene IDAnnotation
Am07G007950.1 polypyrimidine tract-binding protein 3
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am07G007950.1mRNAChr075513521055140267+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF13893.9RRM_52393424.70E-44
PF00076.25RRM_12593243.60E-33
PF00076.25RRM_13724323.60E-33
PF11835.11RRM_8971744.10E-21
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0043484regulation of RNA splicingBiological Process
GO:0003723RNA bindingMolecular Function
GO:0005634nucleusCellular Component
GO:0006397mRNA processingBiological Process

InterPro
InterPro termDescription
IPR035979RNA-binding domain superfamily
IPR000504RNA recognition motif domain
IPR034797PTBPH3, RNA recognition motif 3
IPR034795PTBPH3, RNA recognition motif 1
IPR021790PTBP1-like, RNA recognition motif 2
IPR012677Nucleotide-binding alpha-beta plait domain superfamily
IPR006536HnRNP-L/PTB

trEMBL
trEMBL termDescription
A0AA86SDQ0 _

SwissProt
SwissProt termDescription
PTBP3_ARATHPolypyrimidine tract-binding protein homolog 3

KEGG
KODescriptionEnzyme
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Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT1G43190 polypyrimidine tract-binding protein 3
Medicago sativa L.MsG0680032165.01.T06 _
Oryza sativa L.LOC_Os05g36120.1polypyrimidine tract-binding protein, putative, expressed
Cucumis sativus L.Csa005592 _
Glycyrrhiza uralensis Fisch.Glyur000732s00027536.1 _
Codonopsis lanceolataCl_chr02_53190T _
Arachis hypogaea L.AH15G37710.1Polypyrimidine tract-binding protein homolog 3 like

Expression pattern