Gene detail

Detail information of Am07G005530.1 Annotation

Gene ID	Annotation
Am07G005530.1	glyceraldehyde-3-phosphate dehydrogenase C subunit 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G005530.1	mRNA	Chr07	22308114	22313514	-

Sequences

CDS:

>Am07G005530.1
ATGATACTCATGGGTCAGAAGATCAAGATTGGCATCAATGGATTTGGAAGGATTGGCCGTTTGGTGGCTAGGGTGGCATTGCAGAGAGATGACGTGGAGCTTGTTGCTGTTAATGATCCTTTTATCACAACTGATTACATGACTTATATGTTCAAGTATGACACAGTTCATGGCCGTTGGGAAAACAGTGAAATTGCAGTTAAGGACAGCAAAACCCTTCTTTTTGGTGGTAGTCCCGTCGCTGTTTTCGGTGCTAGGAATCCAGAGGAAATTCCATGGGGTGAGGCTGGAGCTGAATATGTTGTTGAGTCCACTGGAGTTTTCACTGATAAAGACAAGGCAGCTGCACACTTAAAGGGTGGTGCAAAGAAAGTAATTATTTCTGCTCCTAGCAAGGATGCTCCAATGTTTGTTGTTGGTGTGAATGAGAAAGAGTATAAGCCAGATATTGATATTGTTTCTAATGCTAGCTGCACAACTAACTGCCTTGCTCCACTTGCTAAGGTTATCCATGACAGATTTGGTATTGTTGAAGGTCTTATGAGCACTGTTCACTCTATTACTGCCACTCAAAAGACTGTGGATGGACCATCAATGAAGGATTGGAGAGGTGGTAGAGCTGCTTCTGTGAACATTATTCCTAGTAGTACTGGAGCTGCTAAGGCTGTTGGTAAAGTGCTTCCAGCACTGAATAATAAGTTGACAGGAATGTCATTCAGAGTTCCAACTGTAGATGTTTCAGTGGTTGACCTTACTGTTAGAATTGAGAAAGGGGCTACTTATGATGAAATTAAAGCTGCTATTAAGGAGGAATCTGAAGGAAGTTTGAAGGGGATCCTTGGTTACACAGAGGATGATGTTGTGTCTAGTGATTTTGTCGGTGACTGCAGGTCAAGCATATTTGATGCAAAGGCTGGAATTTCTTTGAATAACAACTTTGTGAAACTTGTCTCTTGGTATGACAATGAATGGGGATACAGCTCACGTGTGGTTGACTTGATCCGACACATGGCCTCAGTTAAGTGA

Protein:

Promoter(3k):

>AM07G005530.1
CAAGCAAGTAGTTGACGCGTTCAACGATGGATTGAGGTTTGCTAACGAGTATGGAGCTATCATTTCTAGTTGTAAAACTTTTGATTCTCATTTTCAAAACTGTGCCATCAGTTATATTAGGCGACAAGCCAATCGTGTAGCTCATAGCTTAGCTAGGGCGGCCCAATCTTATGCTTGTCACCAAATTCATGATGTTATTCCTTACTGTATTACGTCTATTTTAATGAATGAAAGAGTTGGCTTGCTTAAAAAAAACACAAAAATAAATAATAATAGGAAATTTTCCAAATAAGTATATTTATTATGGGTACATACCCACGGGCACGGGTACCTCAATATCCAGATCTGTCCTATTTATTGACGGGTAGCCTAATTAATTATCTGTTTATTAAACTCGCGGGTATCCGTTAACCTACCTGCCCCATACCCGTCGCGGATAATACCCGCGGGTACCCACGGGTGTGTTTTTTTTTTTGCCATCCCTACATTGTTGATGGTAAGTATTTCTCTCACCACCACCCGATAATTTTCATGAGGGGGGTATTACCTCAAGAGGATTAGAAGGGATATTTTAAGGGAAATGAAAGATGAGCACGTGTACACTTTAACCCAACCTAACTCACAAACCCAGCCGCAAATTTTGGTTTGGTCTAGCCCATCTCACTGAATCATTTAACGTGGCGAACACCTGCAATTTGCAAATACAAAAATGAAAAAGTAATGTTCCTCTCTAGTTTTTTGGAGCGATTTTAGTATCCAAAGTAGTCCGATTACACGCCCCTCTCACCTAACCTAACACTCTTTGGAGGTGTTAGAGAATCTATAGCTGAGTAACATAGTTCCTTCCTCAGCGCATTCGTTTGAAGCAAGAGGAATCAAATGATTCAAGCTCAGTGGCGGACCCAAAACCCTAGGTCCGGGGTGCAAAAAAAATTCCTTATAAAAAATGTTGGTTCATTGAATTGTTTAATTTTTTTTTCAAATATACTCATTTAATTTACTAAAATTAAGTAATCAAGTTATCTTACTCCAAATTAATTTAAGAGTAAATCTCCAAATTAGTCTATAAGTTACCCGTCATTATCTATTTAAGTCTTAACCTATAGGAAAATAAGAAATAGTTCGTAAAAATATGTGATGTCGGTAAAATTACTTCTTAAGTTTTATAATAGTCTTTTACGAAGATTAATAAGACAGATTTATTAAAAATTGAATGCAAATTGGGTGAAAATTTAAATATACTAGTGCAAATTTAAAATTTCAAGGGGTTCAAACACTACAAGAAAAACGCGCATTACCGGCGGATTTTTTTCCGCCGGTACGGTTCCAGCGGAAATTTGGCATTTCCGGCGATAAAATTTCCGGCGGAAAAAATAGGTTTTCCAGCGGATTTTTTTTAAAAAAAAATATTAATTTTTTTTTAAAAAAACAATCCGTCGGAAATGTGCATTACTGGGGAAAAATCCGTCGGAAATTACTGTCGGAAAAATCCGCCGGTAATGCGCATTACCGGCGGATTTTTAAAATAATTTTTTTTTTAAAAAAAATTCGCGGATAATGCGCATTACCGGCGGATTTTTAATTTTTTTTAATTTTTTATTTAAAAAAATCCGCCGAAAATTTCCGACGGAAAAATCCGCCAGTAATGCACATTTCCAGCGTATTTTCAAAAATTATTTTTTTTCCACTCTTCTCATTTCCTATAAATAAAACTTTCTCCTACACTTTCCTCATTCTCTCATTTCACTCTTTATTTCCTTCTCATACTCTCCAATCTCCATAAATTTCTCCACATATCTCTCTTCTATATTTCCTCTTTCTTCTTCCTTCTCATTCAATCTCTTCCCAAATCTTCTCCCTACATGCACTTCATTTTTCTCAATCTCTTCTCAAAATCTTCACACATTCATACACTTCATTTTTCTCAAATCTCTTCTCTTCTCCTATCACATTTCTGTTTTCTCTAATCTCTTCTCTTCTCAAATATTCAGTCTACGAATTTAAATAATTAAATAATTAAAATAATATTAATTTTTTAAATAAACGAATTTAAATAAACGAATTTTAAAAAAAGAAATAAATTAAATAAGAAATAAATTAAAATAAACGAATTTAAAAAAAGGAATAAATTAAAAAAAATTAAAAAAATTAAATAATATTTTTAAAATAAATTACCGGCGGAATTTTTAAAATAATTTTTTTTTTAAAAAATTAATTACCGGCGGATTTTGGGTGATTACCGGCGGATTTTCCGCCAGTAACCGTTACCTGCGGGCGAATTTCCGGCGGAAAATATCCACCGGTAATGTCCAATTTCTGGCGGATTTTGTCCGCCGGAAATCCCCAAAATTCTTGTAGTGAAAATAATTTTATATAGGAGTATTAGTACTAACATTTTTTTTCCAGAGGGTCCAACCGAATCCCTTAAATTCAAGGTAGGTCAGCACTGTTCAAGCCGATCCCTGAGCTAGCATCGAGAGTTTCACGACAACAAAAGCTAACAATGTTTTAATATGCTTTCAAAATAAAAACTGTTTGAATATATTCTTTAAGGCTTGAATCAACAATGAAAATGTCATTACATTCCCAAATTCAATTTTTGTAGAATAATGTATGAAACAAACACAACCTTCCTATACCAACAAAGATTCCGAGCAGTAACTAAGTTTAGATCCCATTTTAAAGTGTCAAGTTTAAGTATTGGGTGTGATAAAAACTCTATTTAGGCGAGAACCACGCAAATCGACAAAACCGAGTAAATACGTGGCCAACATGATTCCCCGACATAAATTTATCATCAGCAAAGCCAATAAATACTCTACACCAATAACACGGTAAAGAAAAAGCACATCCTTTTTATATTAGCATTTTTAGATACAAGTATTATTCATGTTATTTTAATTGTATAATTTTTTGTTCCTTTCTACAGTTTAGTTTTAAATTTTTTAAATTGGTATGAGGTTTGACTAATTCTATATGTAATCCGGTTATTTTGGTTTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02800.23	Gp_dh_C	163	320	2.30E-69
PF00044.27	Gp_dh_N	8	111	1.70E-34

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Molecular Function
GO:0005829	cytosol	Cellular Component
GO:0050661	NADP binding	Molecular Function
GO:0006096	glycolytic process	Biological Process
GO:0051287	NAD binding	Molecular Function

InterPro

InterPro term	Description
IPR036291	NAD(P)-binding domain superfamily
IPR006424	Glyceraldehyde-3-phosphate dehydrogenase, type I
IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family
IPR020828	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020830	Glyceraldehyde 3-phosphate dehydrogenase, active site

trEMBL

trEMBL term	Description
A0A8B8LR62	_

SwissProt

SwissProt term	Description
G3PC2_ORYSJ	Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic

KEGG

KO	Description	Enzyme
K00134	glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)	[EC: 1.2.1.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G04120	glyceraldehyde-3-phosphate dehydrogenase C subunit 1
Medicago sativa L.	MsG0880046247.01.T01	_
Oryza sativa L.	LOC_Os04g40950.1	glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
Cucumis sativus L.	Csa005733	_
Glycyrrhiza uralensis Fisch.	Glyur000091s00010529.1	_
Codonopsis lanceolata	Cl_chr01_22030T	_
Arachis hypogaea L.	AH10G07730.1	Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic like

Expression pattern