| Gene ID | Annotation |
|---|---|
| Am07G005420.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am07G005420.1 | mRNA | Chr07 | 21968024 | 21970691 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 194 | 246 | 8.60E-43 |
| PF13041.9 | PPR_2 | 300 | 347 | 8.60E-43 |
| PF13041.9 | PPR_2 | 400 | 447 | 8.60E-43 |
| PF01535.23 | PPR | 302 | 331 | 1.70E-38 |
| PF14432.9 | DYW_deaminase | 638 | 708 | 2.00E-33 |
| PF20431.1 | E_motif | 518 | 580 | 2.20E-16 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0016020 | membrane | Cellular Component |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process |
| GO:0046983 | protein dimerization activity | Molecular Function |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding | Molecular Function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046849 | E+ motif |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XJI0 | _ |
| SwissProt term | Description |
|---|---|
| PP228_ARATH | Pentatricopeptide repeat-containing protein At3g13880 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G13880 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0680031403.01.T04 | _ |
| Oryza sativa L. | LOC_Os01g72930.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa009782 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000091s00010515.1 | _ |
| Codonopsis lanceolata | Cl_chr07_10770T | _ |
| Arachis hypogaea L. | AH02G25200.2 | Pentatricopeptide repeat-containing protein At4g13650 like |