Gene detail

Detail information of Am07G004730.1 Annotation

Gene ID	Annotation
Am07G004730.1	demeter-like 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G004730.1	mRNA	Chr07	18845304	18856035	+

Sequences

CDS:

>Am07G004730.1
ATGGAGTTTGGAGAAAAAGAGAAAAAGACGGTTGAATTACAGTTACAGGTTCCTTGGATCCCAATAACACCATGTAAGCCTATTCTACCAAGACCAGTGCCGATCGACACTTGTGACTGTGAGGAGAGAAGAAATCTGGGTACTCATTTCACATGTTTTGAATCCTCAAACAGAAATCTCCACCGCTTCTCAGAGTCAGACCATGCGGCTGCAATCAATTTCACTCAACTTTTGGCTCAGGCAGATGCACATGGATTTTTCAGCAATCAATTTGTTCCCGCTTTCAATTCACAGACACAGTTCAACCAGCAGCCCTTTTTCAATGTCGTCCACCATCATAATTACCAACATCCTCAGGACCATATTGGTACTGATTCTACAGAAAAAGACAAGCAAGTTGTGGTGACACAAGTGAATATGGAAGAAAGGGAAAAGGGGGGAGAAGAGGAAAATGTCTCATCCACAATGTGCAACTATCCACACAACAAAGTCCATGACTCTGTTATTGAATTTGCTTCTGTTTCTACACCATGCAAGGAGAGTTACAACCACAATAAGGAAATATGTCTCGATATTGATCTGAATAAAATGCCTCAACCAAGACCGAAAAGAAGAAAGCATCGGCCCAAGGTCATAAAAGAAGACAAACCCAAAAAAACTACAAAGCCAGCCACTCCAAAGCCTGTTCCATCACAAGAGACCTTAACTGGCAAGAGGAAGCAGGTGAGAAGGAAAGGATCAAACTCAACTCCTCAAACAGAATTGATGCCTGAATCTGCCAAGAAAACATGTAGAAGGTCCTTAAACTTTGACTTAGGAGAACAACCAAGAGATAGACATTTTGCATGCAGAGAAAATGAAACTACACATTTTGATGGAGAATTTGGCATAAAAGTCAGGGAATCACATGTTCCTTCAAAAAGTGATTCCTCTAGGGCCAGGCCAAATGCCAAATATGCAGAAAAAGGAGGCAAAATGTGGGGTTCGACGAACAATCAGGGTGGAAATGAAGATAGTGCAGAAGTTCTATCAAAATCAGTAGTAGGTTCAAAGAGAACACAATTTGGTACCATTCAATATGCAAGTAACAGAAGCATTAATCTGATTGGGGCGCAATATAATTTATTGCAGGCATACTCCCCAAAGTATTGCGTTCAATTTCCAAATATTCAGAAGAAAAGAAGTGAAAAGAGAAAATTTTCCAACACATCCAATACATCTTCCATGACCGCCACAAAAGATGTACAACTAGCAACTTTTGCTCAAGAAGATTCTAGATCACATTCTTATTCATCAACTTCTGAGGGCTGGATTTCCCGTTCTGCTTATGAAAGGGCTATTCATGATAAATTTCAGTCACTTCAGTACCGTTTATCCTCAGAGCAAAAGATGCCAACCAAAAGAAGATCAAGAGTCACTACCAGAATACATGATTACGCTTCCCTGACCACAAATACTGCAAATCTAGGTAGTTCTAATAGACCAACATTTGGGGATGAAGTAAGACCACAGACATGCATTGACGCTCTAGTTGAGGAGATTCGAGGATCACTCACAAAAAAGAAACGAAGTAAAAAGAGAAGTAATTCAACCAATTCAGTATCCTCTTCAACAAATGTAATGCAACAACACCATACATTTGCATTAGAAAATCACAACTTTCCCTTTCACAACTCATTAGATGTTGCTTCTGAAGAGATACAGAAAAACATGCATACTGTGGATACATTAACAGAGCAACTCAGACACCTAAACATATATAGAGAAGCTAGAGAGCTTGTGTTGCATGGGCAGAATGCACTTGTCCCTTACAACCAGCAAAATAAAAAATACAAAGGCCTTGTTCATGAATACGACACCATCATTCCCTTTGAGGGCCCGTTTGATCCCATCAAGAAACAGCGCCCACGACCTAAAGTTGATCTTGATGAGGAGACTAGTAGAGTGTGGAAGCTTTTGATGTTGGATATAAACAGTCATGGGATTGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAGACGAACGAAATGTGTTCCGTGGACGAGCAGACTCCTTTATTGCACGGATGCATCTTGTACAAGGAGACAGGCGCTTTTCTCGATGGAAGGGGTCAGTTGTGGATTCAGTTGTTGGAGTTTTCCTCACTCAAAATGTCTCTGACCATAGTTCCAGTTCTGCATTCATGTCCCTTGCTGCTCGATTTTCCCTAAAGTCAAGCAACAAGTACGAAACATACCACGAGGGAAGTACAAGCTTGATTGTCGATGAACCACAGGTGCAGATTTTGGAACCAGAAGAAAATGCAAAGTTGGATGAAAAAATATTGAATCAATCTGCTCATGAATTGAGTTCTGTGACAAGAGACATCATTGACCTTTCTGATGAAAGAGAAGCGGTTGACAGCAACAATATTGATTCCTGCAGAACTACTGGTAGCTTAGCAGATGAATCCAACTGTAAACTGTTGGAATCAGCTCAAAGGCATCTTGGGGAACATAGTACAATGGAGTGTGCTAGTCTCATAGCTGAATGTTGTTCGCCAACAGAATCTGAAAGCCAAAGTGCAATTACCCAGCCTCACAGTATGCCATCTCAACTCCATCACGAGCAACACAGAGTTTCCAATATTTCGGAGAAAAGCCAAGATCTTATGCAGAAATCAAGGGAATCAGATTTTGTTGGCCACAATTATGCCATGAAGAATGAAAAAAGTAAGTTAGATTCTGCCCCTGTAAAATTAAGGGGCAGGGAGCGTCAGAAAGAGAAAAAGGATAACTTTGATTGGGATAGTTTAAGAATACAGGCACAAGCTAAGGTGGGGAAAAGAGAAAAAACAGAAAGCACCATGGACTCTTTGGACTGGGATGCTGTGAGACGTGCAGATGTCAGTGAAATTGCTGATGCAATCAGAGAAAGGGGTATGAACAACATGCTTGCTGAACGCATTAAGAGTTTCCTGAATCTGTTGGTTGATAAACACGAGAGCATTGATCTTGAGTGGCTAAGAGATGTTCCACCTGACCAAGCAAAAGAATACTTACTCAGCATAAGAGGATTGGGATTGAAAAGTGTGGAGTGCGTGCGACTCTTAACACTACACCATCTTGCTTTCCCGGTCGACACTAATGTAGGGCGTATTGCGGTACGATTGGGATGGGTACCGCTCCAGCCACTGCCTGAGTCACTACAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGAAACAATACAAAAGTATCTCTGGCCCCGGCTATGCAAGCTAGACCAAAGAACATTGTACGAGCTGCATTACCAGCTGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGTCCTATGAGAGGGGAATGCAGACACTTTGCAAGCGCCTTTGCAAGTGCGAGGCTTGCCCTGCCAGGACCAGAGCAGAAGAGTATAGTTACCACAACTGGAAACAATGTAACTGATCAGAACCCATCAGCAATCATCAATCAGTTGCTCTTGCCTCTCCCTGAAAACACTAACCAGGCAAAAGAACTTCAACAAACAGAACTATGGCAACTTCAAACTACATCTGAAATCAATATCTGCCAACCCATTATTGAAGAGCCAGCAACTCCAGAGCCAGAATGCTCCCAAGTATCGGAAAATGATATAGAGGATGCTCTCTATGAAGAACCGAGTGAAATTCCAACCATCAAACTAGATATGAAAGAATTCACTATGAATTGGCAAAACTATATGCAAGAAAACATGGAACTTCAAGAAGTTGAAATGTCAAAGGCCTTGGTTGCTCTAAATCCAAAAGCTGCTTGCATTCCTACACCCAAGCTAAAGAACGTGAGCCGGTTGCGCACAGAGCATTCTGTTTATGAACTCCCTGATTCACATTGTCTTCTGGAAGGGTGGGACATACGAGAACCTGATGATCCGGGCAGATACCTTCTAGCTATATGGACTCCAGGTGAGACAGCAAATACTATAAACCCACCAGAAACAAAATGCATCTCTCAAGACTGTGGCCAGCTCTGTAATGAGAAGGAGTGTTTTTCATGCGATAGTTTCCGTGAAGCCGACTCACAGATAGTTCGAGGGACACTCTTGATACCCTGTCGAACAGCTATGAGAGGGAGCTTTCCACTAAATGGCACCTACTTTCAAGTCAATGAGGTTTTTGCAGAACACGACTCAAGTCTTAACCCAATTAGTGTACCTCGAAGTTGGATCTGGAACCTCAATAGGCGCACAGTATATTTTGGAACCTCCGTACCATCCATATTCAAAGGTAAACAGTTAGTTAAACATTTAATAAATGTTAGCTTTAAATATGTCAAACAATTAAGTTGA

Protein:

>Am07G004730.1
MEFGEKEKKTVELQLQVPWIPITPCKPILPRPVPIDTCDCEERRNLGTHFTCFESSNRNLHRFSESDHAAAINFTQLLAQADAHGFFSNQFVPAFNSQTQFNQQPFFNVVHHHNYQHPQDHIGTDSTEKDKQVVVTQVNMEEREKGGEEENVSSTMCNYPHNKVHDSVIEFASVSTPCKESYNHNKEICLDIDLNKMPQPRPKRRKHRPKVIKEDKPKKTTKPATPKPVPSQETLTGKRKQVRRKGSNSTPQTELMPESAKKTCRRSLNFDLGEQPRDRHFACRENETTHFDGEFGIKVRESHVPSKSDSSRARPNAKYAEKGGKMWGSTNNQGGNEDSAEVLSKSVVGSKRTQFGTIQYASNRSINLIGAQYNLLQAYSPKYCVQFPNIQKKRSEKRKFSNTSNTSSMTATKDVQLATFAQEDSRSHSYSSTSEGWISRSAYERAIHDKFQSLQYRLSSEQKMPTKRRSRVTTRIHDYASLTTNTANLGSSNRPTFGDEVRPQTCIDALVEEIRGSLTKKKRSKKRSNSTNSVSSSTNVMQQHHTFALENHNFPFHNSLDVASEEIQKNMHTVDTLTEQLRHLNIYREARELVLHGQNALVPYNQQNKKYKGLVHEYDTIIPFEGPFDPIKKQRPRPKVDLDEETSRVWKLLMLDINSHGIDGTDEDKAKWWEDERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHSSSSAFMSLAARFSLKSSNKYETYHEGSTSLIVDEPQVQILEPEENAKLDEKILNQSAHELSSVTRDIIDLSDEREAVDSNNIDSCRTTGSLADESNCKLLESAQRHLGEHSTMECASLIAECCSPTESESQSAITQPHSMPSQLHHEQHRVSNISEKSQDLMQKSRESDFVGHNYAMKNEKSKLDSAPVKLRGRERQKEKKDNFDWDSLRIQAQAKVGKREKTESTMDSLDWDAVRRADVSEIADAIRERGMNNMLAERIKSFLNLLVDKHESIDLEWLRDVPPDQAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVTTTGNNVTDQNPSAIINQLLLPLPENTNQAKELQQTELWQLQTTSEINICQPIIEEPATPEPECSQVSENDIEDALYEEPSEIPTIKLDMKEFTMNWQNYMQENMELQEVEMSKALVALNPKAACIPTPKLKNVSRLRTEHSVYELPDSHCLLEGWDIREPDDPGRYLLAIWTPGETANTINPPETKCISQDCGQLCNEKECFSCDSFREADSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFAEHDSSLNPISVPRSWIWNLNRRTVYFGTSVPSIFKGKQLVKHLINVSFKYVKQLS*

Promoter(3k):

>AM07G004730.1
ATTTTGGTCCCCCTATTTTCCCAATTTGAAAAATCATAATCCCCCTCTTAATTTTGACTGACTTATCCTACGTGGCAGCCCACGTGGACTGCCACGTCGGCGCACCCCCCACCCACCCCCACCCCACCCCCCTCCACTGTTCCTCTTCCCCACCGATCCCCCCTCCACTGTTCCTCTTCCCCTCGCCCCTCCCACCCCCACCTCCGTGAAGCCCACCCCCCTCCACTGTTCCTCTTCCCCTCCCCCCTCCCCCCTCCCACCCCCCACCTCCGTGAACCCCCCCACAACCACACCCTCTCTCTCTCCTTCGCATCTCCCACCGTCGCTCTCCCTCCTCTCTCAATCACCGATCCCCCTCGTTCTCCATCTCTCTCTTCCCCGCTCGTTGCTCTCCCTCTCTCGCTCGTCGCAGATCGCAGTCGGAGGGAAAGGAAAACGTCGCTGATCGCAGAGGAGGGCGAAGGTGGTGGGTGGGAGGGGGGATCGGTGGGGAAGAGGAACAGTGGAGGGGGGCTGGGGTGGGGGTGCGCCTACGTGGCAGTCCACGTGGGCTGCCACGTAGGATTAGTCAGTCACAATTGAGTTTTAATTTTGACCAAATTAAGAGGGGGATCAAATTCGTCAAATTGGGAAAATAGGGGGATCAAAATCGTCAAATTAAAACTTTAGGGACCAAAATCGTAAGTTGGTCATAATAGGGGGACCAAAACTGTAATTAAGCCTAAAAAAATAGTGTGTTTTGAAATACTTTAGTGTTGAAAAAAAATTAATCATTTAAATGCTCAACGTTCAGTCCTCAATATTGAAAAAAAATTAACTGTTTGAATGCGCAAAATTTGTTTTGGTGAAAAAAATAATCAAAACAAAATATGTAAAGTCTGATGCTAAGCAGTGTGTTTTTTTTATACTTTAGTGTTCACAAAAAAAATTAACTGTTCAAATGCTCAATATCAAAAAAAATAATAAATTGTATGAATGCGCAAAATTTGTTTTGGTGAAAACAAAGTCAAAACAAAATATGTAAAGTTCAATGCTAAGTAGTGTGTTTTTTTATACTTTAGTGTTCGTAAAAAAATTAATCTATTCAAATATGTTATGTAGTGTGTTGTTCTGTGAGATCTTATGTAATGTGATAATGCGTTAAACTAAAATTTTTTGATTATCATTTGTTGTCTATATTTTAATGGATCAATTTCATTTGTGTGCCGATTTTTAAAAAAAATTAACTATTTGAATTACTTATGTTTGAATTATAAATTCTCGTTAATTTGTGTGCTGATTTTTAATTTATTCATCAAATTTTAATATCACAACAATTAAGTACTTACTAAAGCTTTGGCCCCGTGCATCGCACGGGTCCCGGCACTAGTAGGATTTAAATGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAAATAATAAATATAAATGTTCCAAATGTATGCGACCACAACAGTTGTCATTCATCTACAATTTTTTTGACACCCTTATTTCTCCAAACTTGGTCACGTAATAACTATTTTTTATACATGACTTGTCTGTTATTGACACATCAAATCGACACATCATATAGCCTTAACCTTCTTAACAAAATTCAGCAATGCAAAATATAGTATAGAGATTTTGATAGCAAAATTTGAGTTTCATTACTTCAAAAAAGAGTTTTATACGTGTGGTTATAGCCTAAACCTCTTTAACAAAATTCAGCAATGCAAAAGATAATATAGAGATTTTGATAGCAAAATTTGAGTTTCATTACTTCAAAAAAGAGTTTTATACGTGTGGAAGTGGTGCACACGTATTCCAACTCTAAGATTTATATATAGAGATTTTATCGATCAACACTCACCTCTCAAAGTAGAAATTCATGGTCTGTATATTGCTATATACACACACACTACTAGACATCGACAAAAAAAATAAAAAAAACAAATATGTTGGATTTTGAGATATTGATTGGTTTTTCTTATTTATTTTGTCAAACAACACCAACTAAATCACCGTCCACCAACTGGGTGTGACACAAGTGATAAGTTGTTTGAGCCCTTTAAGCAACTAGTCAGAGGTTTGATTGCTGACCGGTGTGTATGGAGAGACATCGCTTGGAAAATGTCAGCCCTTAAATGAACTTCAGTACCTCGAGGAAATAGTCTCCACAGTCACCATGAAGGATACTCGAGTTTACCAAAAAAAAAACTAAATCACCGTCCAATGTGTGGACTTGGACGACTAGAAACTTTTATTTATGAGAGTGACATCAATCTTCCTTATGTTTTGAATTATTCTCAATGGTCATCCCAATATATATAGACCATATATTTCAATATCTCATCAATAAAACCTCCTATAAAATATACATGCACTTTTCACACTGATTTCATAGCAGGTGCTTTTATGTCAGCTTAGACACCTCCACTAATAATACCTCGTATCTATTTACGTGAATTACATGCACATGCAAAACAAAACATGAATGTTACGCCCCGCACCGCCGCGACTTGTTTGTTATCTAACCTCCTACCTAATAAAATCCGTTATAGGATAGGATAATATCTTGAACAAACAAGGAAAAAAACAAAAGAAAAATACATAATTAATTAATCTTAGGCTAGGATGCATGTGCATAAAATTTTGTGCAGGTACCTTTTTCCTCTTCTCTCCCTTTTTCGGCCGAATAGATTTGAGATCTCCACCATATAGGCACTGTAACTTCTTTTCTGCTTCAAGCAATTTTGATGCTTTCTTCACATGGAACATGTTTTTGTTAATTTTTTAATATAATTTAAAGGTATAAATTCTTCAATCCTCTTTCAATTACTACTATCTTGACTACTAACACCAGCTCTGTCAGTCATCGGGTTTCAGACTCGACCCGCGGACCCGTTTCTTTCCATTTCAACTCCTGCGCGCAACTGAATGGTGCGATTCATCATCATCTGAATCGCGATGCTTGCAGATTCAGTTGCGATA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF15628.9	RRM_DME	1366	1433	3.20E-35
PF15629.9	Perm-CXXC	1332	1363	6.60E-12

Gene family

Gene family	Subfamily
Epigenetic Regulators	DNG1

Gene Ontology

GO term	Description	Category
GO:0019104	DNA N-glycosylase activity	Molecular Function
GO:0051539	4 iron, 4 sulfur cluster binding	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0004519	endonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR028924	Permuted single zf-CXXC unit
IPR003265	HhH-GPD domain
IPR023170	Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR003651	Endonuclease III-like, iron-sulphur cluster loop motif
IPR044811	DNA glycosylase, plant
IPR011257	DNA glycosylase
IPR028925	Demeter, RRM-fold domain

trEMBL

trEMBL term	Description
A0A151U386	_

SwissProt

SwissProt term	Description
ROS1_ARATH	DNA glycosylase/AP lyase R1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G36490	demeter-like 1
Medicago sativa L.	MsG0780041078.01.T03	_
Oryza sativa L.	LOC_Os01g11900.1	hhH-GPD superfamily base excision DNA repair protein, expressed
Cucumis sativus L.	Csa005084	_
Glycyrrhiza uralensis Fisch.	Glyur000075s00007175.1	_
Codonopsis lanceolata	Cl_chr07_14980T	_
Arachis hypogaea L.	AH12G35770.1	Protein ROS1 like

Expression pattern