Gene detail

Detail information of Am07G004200.1 Annotation

Gene ID	Annotation
Am07G004200.1	CDC27 family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G004200.1	mRNA	Chr07	16643010	16655143	+

Sequences

CDS:

>Am07G004200.1
ATGGAAGCGATTCTCATAGATTGTGCGCAAAAAAGTCTTCGACATTTCATGCACTCAAACGCCATCTTCATCTCTCAACGTCTCTGCGCTCAGTTTCCCACCGAGACAAATTTGCAATTATTAGCGGCCTGTTACTTGCAGTGTAATCAAGCTTATTCTGCATACCATATCTTAAAGGGAACACAAATGCCGCAATCTCGGTATTTGTTTGCAGTATCATGCTTTCACATCGATCTACTTAGTGAAGCTGAAGCAGCGTTATGTCCTGCTAATGAACCTGGTGCGGAGGTTCCAAATGGTGCACCTGGTCATTATCTATTAGGGCTGATTTACAGGTACACTGACAGAAGGAAAAATGCCATACATCATTTTAAGCAAGCACTATTATTGGATCCTCTAATGTGGGCTGCATATGAGGAGTTGTGCATATTAGGTGCTGCGGAAGAAGCTACTACAGTTTTTGATGAAGCAGCTGCTTTTTGCATACAAAAGCAATTTATAAATTGCTCAACCTCTCCAAACCCGCATATGTCAGCTGAAGATTGTAATGTAGTTGTGGCCAGACACAGTGTGTCTGAAGATGCGAGTCCAAGGAAACTAAGACACATGCAAGGCCTTAAGGATATTGCTGCAAATCCCCAGGGAACATCTATAATAGGAGGAACTGCTGGTCAACTTATGTGTAGTAATTCATCTAACATGTCATTTTATAACACCCCATCTCCAATGGCCACACAGTTGTCGAGTGTTGCTCCACCCCCTTTGTGTAGGAATGTAATGCCAAATGGCCCAAATCTTAGCACACTTAATGCCGACAATTCTCCCAAGTCAACAGTGAACTCTACTATTCAAGCCCCTCGAAGAAAGTTTGTGGGTGAAGGAAAGTTACGAAAGATTTCGGGTAGATTATTTTCTGATTCTGGTCCTCGACGTAGTTCAAGACTCTCTAGTGATGCAAGTTTAAATGCAAATGCTAACACAACAGTTGTATCTGGAAACGGAGCTGCTAACTCTTACAAGGGAGGGTCAAAGCTTAGCCCTACGGCATTTCGGACCATGGCAGTTCGAAAAGGACAGTCATGGGCCAACGAAAACATTGATGGAGGGATTCATAATGATGTTCTGGATGTTGGTCGTTTAAATTTTACATCAACAGCTTCTTGTTCGTCTTCTGCCAATGAGGCTAAATCTTATGAACAAGATGAAGCAACTCTTCAAGTTGGTGGGCATATAACAAATGGGTCTAAAGTCATCACAGGTGCATCAGAAATACTGAACCTTCTAAAAGTTATTGGTGAAGGCTATAGGCTTGCCTGCTTGTATCGCTGCCAGGATGCACTGGATACCTATCTTAAACTTCCACCGAGGCACTACAATACTGGATGGGTTCTTTCTCAGGTTGGAAAGGCATATTTTGAACTAGTTGATTATTTAGAAGCTGATCGGGCCTTCAGTCTTGCTCGTCAGATTGCACCTTATAGTTTTGAAGGAATGGATATATACTCAACAGTCCTTTATCATTTAAAGGAAGATATGAAGCTAAGCTACCTGGCACATGAATTGGTTTCAACTGATCGTTTAGCTCCTCAATCTTGGTGTGCCATGGGAAATTGCTACAGCTTGCAGAAAGATCATGAAACTGCACTTAAGAACTTTCAACGGGCTGTTCAACTGAATCCCAGATTTGCATATGCACACACCCTCTGTGGCCATGAGTATGTTGCACAAGAAGATTTTGAAAATGGGATTAAGAGCTATCAGAGTGCACTCATGGTTGATGCAAGGCACTATAACGCCTGGTATGGACTCGGAATGATATATCTTCGCCAAGAGAAATTTGAGTTCTCTGAACATCATTTTCGTATGGCTTTCCAAATCAACCCAGAATCTTCTGTGATACTGTCATACCTTGGAACTACTCTGCACTTTTTAAAGAGAAGGGAGGAAGCGTTGGCCATTATGGAGAAAGCTGTTTTAGCAGATACAAAAAATCCACTTCCCATGTATCAAAAGGCCAACATACTCATGAGCCTGGAAAGGTTCGACGAAGCTTTGGAAGTCCTAGAGGAGCTTAAAGGGTACGCACCCTGCGAAAGTAGTGTCTATGCTTTGATGGGCAACATCTATAGGAGGCGTAACATGCATGAGAGAGCAATGTTTCATTATGGCATTGCTTTGGATTTGAAACCATCTGCAACCGATGCTGCTGCAATTAAGGCTGCCATTGAGAAATTGCTTCTCCCGGATGAGTTAGAAGACAACTTGTAG

Protein:

Promoter(3k):

>AM07G004200.1
CAAAACGTGTACCAGCAGAAAACCCAAATCTGCAACTCGGATCTCCAACAATGGCGAAATAGAAGGTCCAACAACCATTAACCTTACCACAAAATACTTACAGCCCCAGAACTTCATTCCCTTGTATGGGGTATCTTTCTTCACAGTTCACACATTTTGCGCCACACAAACACTCAGGTGGAGGTTAGTAGAGCTCCGTGCATTAGATAGACCAGAAAATGGATAGCTGTTCGAATTGAAAGATGTCATTGATTTAGTGGGGAAGAAGATGAAGATGACAATTTTCGATTTAAGGTTTTCTTTAACTCAAATGGGGGGTGAGTTAGTGAAGAAGATGAAGATGGGGTTTTGAGATTTAGGGTGTTCTTTGATGTTCTTCAGATTATATGATTTTTCTTTTGTTTCTTAGATTTTGATTTTGATTTTAAAGTGTTTTCTTATTTGTTTATTTATGTTTTGTGTTTTTAAAATTAAAAAACTGAAATACATATGTGTAAAATGATATTGAATTAAATAATACATTTAATTGCCACCTCAATTAATGAATGACACGCCACATTGACACTTAAGACGCCACATCAATAATTAACGGCTAGCGTGGCGTCCGTTAACTTAAATTGACGGAAGGGAACAAAATGAAACGAAAATGGAAGATGAGGGATCAAAACGAACCAAAAAAAGATAAATGACCAAAATGAAACTTAGAACAAAGATAAATGAACAAAAGTGCTATTTAGCCTTTTTTTTTATTGATGAAGGAGGAAGAAGATGAAATAATTTATGGAACGAGAATGAGAGAGCATATTGCAATGATTGTTGGAGATGATGGGGAACAAGGAAGATGATGGTGGATGGTAGGTTCCATGGCTGTTGCATATATTTTCTTGAAGAAGAAGAGGGTTTTTTTTTTTAAAATCTTTAATTAAAAATAATTATAAAATAATCAGTCAGCAAATAAAATTGTCACGTAAGCATAAAAAAAACCATATAAACACTCTAAAAGTTAGATAGACATTTTTGTAACAAAGTTAAACAAAAAATTGTTAAAAAGGGCAATGACGCAATGTTTTTAAAACTTAAGAACTTAATCGTTATAAAAAAATTAAGTGACTTATTCGTTACCTAAAAATCTTTTTTTTTTGACAAGCCCCGGAAATATTTTGAAATTTTAAGGCTTAAATACGTTTTTACCCCCTGCAAATATGTGGTGTTTTGTTTTTACCCCCTACAATTTTTTTTTTAAAAACACCTTGCAAATTCCACATTTTTGACGTTAGTCCTTCTGTTACTTGCCCGTTAAAAAAAAACCTACGAGTCACACATTTGCCATTTATATTTAGTTTTCTTTTATTTTAAATATTTGCTGTTTTACCTACGTGTCACACATTTGCCATTTATATTTAGTTTAAATATTTGCTGATTTGGCATTTAAAATTATTTTAAACCCTAATTCCCCATCTTCTTCCCCCATTTCCAGATTCATTCTCTCTTCCTCTTCACATTCTTTCCCAGGAACCCTTCTCTTCTCTTCACCAAACACAAACCCACTACCCCATGAGCACAGAACCACCAAGAAACATATATTCTTACCCATTCTTCTTCTCAGCAGCAGCAACAAGAACCCATTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGATTCTTCTTCTTCGATTCTTCGATTCTCAGAGCAACAACAACAACAACAAGAACCCATTCTTCTTCTTTCCCTCTACTGGAGAATACAAAGTGGGTTTTGAGTTTGAAAATACTTGACTCTTCGGTTGGTAGTGTGTTAGCGCTTTTTGAAGTTTTTGGGTTTCTTAAATTTTCTTTGATTCAAGAAAAAATGGAAAAAAGAGATGTTTTGTTCCTTTTCGTTTTTTAATTTTGCTTCATTTTCGTTGTAAATCCTTAAGATTCGTTTTTTTTCTTCAGATCTGTTTTATTTAATCTTCATCTCTATTGGGTTTTCGTTACAAAATTAGGATCGACTACAGCATGTTCTTCATCTTCGTTTTTTGTTTTTCATTTTTATTTCTTAGTTATTGGTTTGTTTTACTGGGTTTCTAGGTATCAATTTCTGGGTTTGTTGATGATTGATGAAGTTGGAGTTGGAGAAGTACCCTTCTGTACATCTATTCATTAATGGAAGAAGAGATGTTTTTAGTTCTGGGCATGTTTGTCAAGGTAACGAGTTTATGAGAACATGGTTTTAAGATATGAAATTGCTGTGAGAAGAGGGAAGATGAAGTGAGATGAAATTGCTGTAAGGGAAGAGGGATTCGCTTGGGAAGATGAAGTGAGGTGAAACGCAGGGGGAAGCGCAGGGAGAGAAGAGGGAGGATTGAGAGATGAAACTGCTGTGACATGAAGCAGAGAGAGATGGGGAAGATGAAGTGATATTTTAGGGTTTTTATTTAATAGGTGGCAATACTAGTCGGCATAAAAAAAATTAGAAATAAAAATAAAAATAAAATTCCAACTCAGAACTCTGTTAGCCACGTAGACGTTTTTTGTAACGTCTGGCTAACAGAGGGACTAAAATCAAAAAAGTGTCTTTTGCAAGAAATTTTTTTTTAAAAAATTTTGCAGGGGTAAAAGTAAAACACCTATATTTGTAGGGTGTAAAAACATATTTAAGCCAAATTTTAATATCTAACGAATTATTAATTAATGGATTATAACGGACCAGTAGATTGGCTGATATCCATGGACCCCGGCATGACCCCAAAGTCGCGTGACCAAATTTGAAAAACGATGGTTAGGTCACGTGCCACCTTGATTTGAATCAAACCCAACAAAATAAAATTAAAATTAAAAATAAAAAAATAAAAAATATAAAATCATCGAGAAACACCCAAACCAAAACTCGAAAAAAACCCCAAACTCGTTGGTGTTTCCGTTCACTTCCTCACTTCTTCTTCTTTCTCTTTTTCTCTTCGGAAACCGAAGCTAGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00515.31	TPR_1	530	562	2.10E-38
PF00515.31	TPR_1	598	629	2.10E-38
PF12895.10	ANAPC3	15	88	2.00E-19
PF14559.9	TPR_19	648	707	4.50E-14

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016740	transferase activity	Molecular Function
GO:0031145	anaphase-promoting complex-dependent catabolic process	Biological Process
GO:0051301	cell division	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0016567	protein ubiquitination	Biological Process

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR013105	Tetratricopeptide repeat 2
IPR001440	Tetratricopeptide repeat 1
IPR019734	Tetratricopeptide repeat

trEMBL

trEMBL term	Description
A0A1S2YMY7	_

SwissProt

SwissProt term	Description
CD27B_ARATH	Cell division cycle protein 27 homolog B

KEGG

KO	Description	Enzyme
K03350	anaphase-promoting complex subunit 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G20000	CDC27 family protein
Medicago sativa L.	MsG0780036807.01.T01	_
Oryza sativa L.	LOC_Os06g41750.1	tetratricopeptide repeat domain containing protein, expressed
Cucumis sativus L.	Csa010954	_
Glycyrrhiza uralensis Fisch.	Glyur000039s00004180.1	_
Codonopsis lanceolata	Cl_chr04_52610T	_
Arachis hypogaea L.	AH14G37600.2	Cell division cycle protein 27 homolog B like

Expression pattern