Gene detail

Detail information of Am07G002800.1 Annotation

Gene ID	Annotation
Am07G002800.1	U-box domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G002800.1	mRNA	Chr07	9499892	9510544	-

Sequences

CDS:

>Am07G002800.1
ATGGCGGCGACGACGACGGCGAAACCTCAGCGAACTCCACAACAAGTGGAAGACATCATAATCCGAAAAATCTTCCTCGTCACCATCACCGATGACAACACCACCGTTACCGATAAAAGAATCGTGTATCTTGAACAAACCGCCGCCGAAATTCTCAGCGAAGGTAAAGACCTTCTCCTCTCACGCGATTTGATGGAGAGAATCCTAATCGATCGTTTATACGGCGATTTCACCGCCGTTAGTGACGGGGAATCGCCGTTTCAGTATCTCGTCGGTTGCTTTCAGCGTGCTCATGATGAGGCGAAGAAAATCGCTAATATGAAGGATAAGAACATGAAATCGGAGATGGAAACCGTTGTTAAGCAAGCGAAGAAATTATGTGTTTCGTACTGTAGGATTCATCTCGCAAATCCGGATATTCCTAGCCGGAATTCGAGTTCTGGTCCTGGTGTTGGTGCTGCTGCTGCCTCGCCGCTCTTGCCGTTGGTTATTGCGGAGTGTGGCGGCGGTGGTGGAATGGGAGTGTTTGGTAGCGGCGGTAGTGGAGGAGTGAAGAGTCCGCCAGGGTTTTTGGAGGAGTTTTTTACGGACCCTGATTTTGAAAGCTTGGATAGAATTTTGAAAGGGTTATATGAGGAATTAAGAGGGAGTGTGATGAAGGTTTCTGTGCTTGGGAACTTTCAGGATTCTCTTAGGGCTTTGTTGTTTTTGGTTAGGTTACCTGTTGGTGCAAAGTCTCTTGTGAGCCATGAGTGGTGGATTCCCAAAGGTGTTTACATGAATGGACGTGCTATTGAGATGACCAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCAAACCTTCTTCAGGAGCCAGCCTGATGTTGGGCAACAGTGCTTCTCTGATGCATCAACTCGGAGGCCGTCTGATTTATTATCTTCATTCACTACAATTAAAACAGTCATGAATACCTTATATGATGGCCTATCTGAAGTACTCCTCATCCTTCTAAAGAGTACTGATACTCGTGAAAATGTACTTGAGTATATTGCAGAGGTTATCAATTTAAATGCATCCAGGGCTCATATACAGGTTGACCCAATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTTATGCTTCGTCTGTGTGAACCTTTTCTCGATGCTAGTTTATCAAAAAGGGATAAAATTGATCCAAAATATGTGCACCACTCAAACCGTTTGAAGCTAAGTGGGTTGACTGCGCTTCATGCGTCATCAGAAGAAGTTGCTGAATGGCTTAATAGCAAAAACCCAGCTAAGGCTGGGGAAATCAATCAATATGATGATGGTCAAAAACGCTTGCGACAATCTCAAGAGGCCACTAGTTCTGGTAGTAATAATGCTAGTCAGCTTTCAAATGAAAATTCTGCACGTGGTGAAAAGACAAAATATTCATTTATTTGCGAGTGCTTCTTTATGACTTCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTGGTTCAGGATATTTCTAGATCTGAAGATGCTCTTTCCACTCTTAAAACCGTGCATGGGCAGTCACCATCTCCTCAATTGGAATTGGATATATCTCGACTTGAGAAAGAACTAGAGTTGTACTCACAAGAAAAGTTTTGTTTTGAAGCTCAGATATTGAGGGATAACACATTTATTCAGAATGCACTTTCCTTCTACCGCTTGATGATTGTTTGGTTAGCTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCACCAACATGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGGCTTGTGCTGGATGAGTTTATGAACTTTATAATCATGTTCATGGCCAGCCCTGAATTTGTTAAAAACCCATATCTGAGAGCTAAGATGGTTGAAGTCCTAAACTGCTGGATGCCCCGTAGGAGTGGATCATCTGCTACAGCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGATCTCACACGCAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCCGAACTCCTTGAGTACCTATGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGACGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCCGAGATGTCAAATACTGCTGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAAAGGACCCGGTTATTCCACTCTCAAGAAAATATTATTAAGATAGATATGAAGTTGGCAAATGAAGATGTCAGCATGCTTGCATTTACTTCAGAACAGATTACCGCTCCATTCCTGCTTCCTGAAATGGTTGATAGAGTGGCTAGCATGCTCAACTACTTTCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCGCTTAGTCTGAAAGATCCTGAAAAATATGAATTTCGTCCAAAGCACTTGCTAAAACAGATTGTGTACATGTATGTTCATCTGGCTAAAGGTGACACCAATTCCATCTTCCCATCTGCCATCTCAAAGGATGGTCGATCGTACAATGATCAGTTGTTTAGTGCTGCTGCAGATGTCCTTCGTAGAATTGGTGAGGATGGCAGAATTATACAGGAGTTTATTCAGCTCGGTGCTAAAGCCAAAGTTGCTGCTTCAGAGGCCATGGATGCCGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCCTCTTCAAGGATCACCGTTGATCGTCCAGTCATCCAGAGGCATCTTCTTAGCGATAGCACTGACCCATTCAACCGTTCCCATCTTACCGCTGATATGCTGATACCTGATGATGATCTCAGAGCAAAAATTGAGGAGTTTGTCAGGTTTCAGGAAATGAAGAAACACGGTGAAGGCCTAAGCATTCAAAGTAGTAAAGACACCATTCAGACCACAAATGGGGAAATGTTGATTGATTAG

Protein:

>Am07G002800.1
MAATTTAKPQRTPQQVEDIIIRKIFLVTITDDNTTVTDKRIVYLEQTAAEILSEGKDLLLSRDLMERILIDRLYGDFTAVSDGESPFQYLVGCFQRAHDEAKKIANMKDKNMKSEMETVVKQAKKLCVSYCRIHLANPDIPSRNSSSGPGVGAAAASPLLPLVIAECGGGGGMGVFGSGGSGGVKSPPGFLEEFFTDPDFESLDRILKGLYEELRGSVMKVSVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFRSQPDVGQQCFSDASTRRPSDLLSSFTTIKTVMNTLYDGLSEVLLILLKSTDTRENVLEYIAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDASLSKRDKIDPKYVHHSNRLKLSGLTALHASSEEVAEWLNSKNPAKAGEINQYDDGQKRLRQSQEATSSGSNNASQLSNENSARGEKTKYSFICECFFMTSRVLNLGLLKAFSDFKHLVQDISRSEDALSTLKTVHGQSPSPQLELDISRLEKELELYSQEKFCFEAQILRDNTFIQNALSFYRLMIVWLAGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGLVLDEFMNFIIMFMASPEFVKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIKIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVYMYVHLAKGDTNSIFPSAISKDGRSYNDQLFSAAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDDLRAKIEEFVRFQEMKKHGEGLSIQSSKDTIQTTNGEMLID*

Promoter(3k):

>AM07G002800.1
CGTCAAGCACTTCTTTCTAAAAACCCTTTTTTCCTCCTTTCTCGCCAAAAATAAAAAAAATTTATTAAGTTCTTTAATAAGAAATAAAGAGGCAAATTAGGTATTTTTCAAATCAACACTTAAAACCACACATTTAATTAAAGGTTCCCTCTCAGTAGAGAGGACGTGCGAGGTGCTAATACCTTCCCCGCGCGTAACCGACCCGCCGAAAAAACGCATTTCTCTTTTAGTGGTTTATCCTCAAGGCAAATCTGTAGTTGGTTGTAAATGGGTGTTTCGTGTTAAGTAAAACCTTGATGGGTCTGTCAACAAGTACAAGGCAAGGCCAGCAGGCAGCCATGGGCATCATCAACAATATGAATATGACTATACAGAAACTTTTCCCCTGTTGTGAAGTCAATAACTGTTAGATTTATTCTAACTCTTGCTCTTACTTACAATTGGCCTCTCAAATAAGTGGATGTGAATAATGCCTTCCTCAATGGTACTCTAGAAGAGGATGTTTATATGAGTCAGTCTCCAAGATTTGTCTCAAATGATGCTACTCTTGTATGCAAGCTCCAAAAAGCCATATATGACCTTAAACAAGCTCCGCGTGCCTGGTATGAGACACTCACCAAAACACAGGTGTAGACTATTTTGAAGATCAAACTCTCTATATGAGTATTGTGGGTGCTCTCAGTGGCAGACCCAGGACCCCGGGGTCAGGGGTGTCAAATTTTTTAAGGCCGGTGTCAAATGGGTGCAGAACTTGGTCTACTAGTACAATTTAAAATTTCAGGAGATTTAGGCTATTTATATAGGGTGTTTAGTGCAAAAAAAAAATTCCAGGGGGTTCAACTGAACCCCCTGGTTGCATGCTAGGTCCGCCACCGGGTGCTCTTCAATATGTGACCATAACAAGACCAGAACTAGGCTATGCAGTAAATAAAGTGTGTCAATTCAAGTCCCAACCACTTGTCTCTCATTGGACAGCAGTAAAGAGAATTCTCAGGTATCTCAAGGGTACAAATGACTATGGCCTTGCTTTTCAACCTGCTACAACAACTTCTCCATTAACTCTTAGGGCCTTTTGTGATGCTGATTGGGCCTCAGATGTTGATGGTAGACGTTCTACCTTAGGTGCATGTGTGTTTCTTGGTCCAGATCCCATCGCTTGGTGGTCAAAGAAACAAACTCTAGTAGCCAAATCTACAGCAGGGGGTGAATACAGAAGCCTGGCTCTAGCTACTTCTAAAGTCATCTAGGTGCAATCCCTTATGCAGAAACTTTAAGTCACCATTCCTAACTGATGACGTTTGGCTTTATCGCCCCACCCACGTAAATTAAGAGATAAAATATTCATGGGATACCTATGGTGTTCGCCCCCTTATTCCTCGCAACTTCATCTCTCCTCTCTCCCGCTTCAATAAGATCAACATAATTCTCGTATAGAAGAGTCCCAACCACCCCAATGCTCTTAGCCGCATCCCACACCTTCATGGCCACTGACTTGCTTTGGAGAGCCCAAAGCTTGTTGTTGCACATCTTGATATCAGAGCTTGAAATGGAATCAGCACATAGTACCGTGCCCGCTTAGAAAAGGAACGAAGAATTCGCTCTAGCCAACATGGACTTTCCTTCCTCCGCTAAGCTTCAGATATCACTCGAGACTAGAGGGATTTTTTCCAGTTCGCAAACAATACAGAGAATCTTACCTTTCTTCGGACCCACCACGAGCCACTTTTGATTTCTTTTGGGTTTAAGTTTATTCACCTGAATCTGCTTCACACCATAGCTTGGGTCATGCGCATTTTGGATCGAAGGAAGTTCAAATGAGACAGGCCTATTAATTGGTCCAACACTAACATGAGGCTGGCCCAAAGCATCTCCAACCACCGAATTAGTAATAGCAATAAGTTGACCCGCAGCTGTTGATTGACCATCAACCTCATTCATCGCAAACGTATCCTTCACAACAAAAGTCAAATATTTAAAATTTGAATTACTTTGACCAACAATAGGCTCCTCCTCAAAAAATAGCTCAATAACAACTTCCATTGATTTTCTCACTACTAAATCATAACAAATATGATTAATAAACACGAATTTTACTTATATTTTATTATACTATAATAACTTAGAGGATCCGAATCTACTTATAATTTGTTTAGGATGATGTATAAATTGTCGCGCAAACAGACTTAATTATAAGCAAAAATAACTATTTTCACACCTATTAGGATAGTGGTTTTGTGCATTTAATTTCTTTAGATTCATGGAAAAAAAAACAAATAAATTTACAAAACTATCCTTAATTAATAGTTATCTTCTCACAACATTAATGAGCTACTTTAAGGGTAGTTGTGGAAAAATAGCATTAAATATGGGTGAATTAATTGAGATTTGCTTATATTTGAGTCCACCAAAACTAGACAGTTTTTTGCTTATAATTAGGTCCGGAGGAGTAACTGTTATGAATATTGCTATTGAATGTCCATTATTCTTCCGTTACCTTCTCATCATTATCTTGTAAGTGGTTTTTTACTGAGTTACCAATCCCCATGCAATAAAAGACTCTTATCTTCACCTTCATATGTAGAGACTAACTTGATATAGAGGCTCTTATCTTATCTCATTCTCTTTTTCTTCTTTATGCTATAACTTTAATTATTTCTTGTCATTAAAAAATGCTAAACCGAGTTTAGAGTGTTAACGGTGGCACGATTTATATGGGAAACAAGGTTGAGAAAAACGACCTCGTTTCATCTTCTTAACACCTCGTGTTGAGGTGAAACCAAACCGAGTTTAACCCAAGAAGAAGAATCTTCTTTCTTTCCCAAACATTCTTTTCTACTCTCACTCAATCTCAATCTCTTCACCTTAGCACAAGATCCATTCCCCTCATAATTTTCCATTTCTTTCTCAAGAAAATCAAAACAGAAAATTCCAATTTCAATTTTCCAAAACTAAACCTCAAAATCACAGAGATTAACTGAGTTCAATCGATCGATCGCTCCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF10408.12	Ufd2P_core	271	935	1.60E-206
PF04564.18	U-box	952	1020	8.70E-29

Gene family

Gene family	Subfamily
Ubiquitin Family	U-box

Gene Ontology

GO term	Description	Category
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0016567	protein ubiquitination	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0004839	ubiquitin activating enzyme activity	Molecular Function

InterPro

InterPro term	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR003613	U-box domain
IPR019474	Ubiquitin conjugation factor E4, core
IPR045132	Ubiquitin conjugation factor E4

trEMBL

trEMBL term	Description
A0AAN9KHB4	_

SwissProt

SwissProt term	Description
UBE4_ARATH	Probable ubiquitin conjugation factor E4

KEGG

KO	Description	Enzyme
K10597	ubiquitin conjugation factor E4 B	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G15400	U-box domain-containing protein
Medicago sativa L.	MsG0680030873.01.T01	_
Oryza sativa L.	LOC_Os03g31400.1	U-box domain-containing protein, putative, expressed
Cucumis sativus L.	Csa002715	_
Glycyrrhiza uralensis Fisch.	Glyur000258s00015261.1	_
Codonopsis lanceolata	Cl_chr03_38710T	_
Arachis hypogaea L.	AH20G32690.1	Probable ubiquitin conjugation factor E4 like

Expression pattern