Gene detail

Detail information of Am07G002330.1 Annotation

Gene ID	Annotation
Am07G002330.1	cullin 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G002330.1	mRNA	Chr07	7781311	7786045	+

Sequences

CDS:

>Am07G002330.1
ATGAGCACGCAGAAGAAGAAAGGGTTCCAGATTGAGGCGTTCAAGCACCGCGTGGTTGGGGATCCGAAGTACGCTGAGAAAACGTGGAAGGTTCTAGAACACGCCATTCACGAGATATATAATCATAATGCCAGTGGTCTTAGCTTTGAAGAGCTTTACAGGAATGCTTATAATATGGTGCTATACAAATTTGGGGAGAAACTTTACTCTGGGCTTGTGACGACCATGACAGGTCATCTCAGAGAAGTTTCTCAATCAATTGAGTCTGCTCAAGGAGAAGTTTTCTTGGAGGAGCTCAATAGGAAGTGGGCAGACCATAACAAGGCATTGCAAATGATCAGGGACATATTGATGTACATGGATCGAACCTTCATACCAAGCAACCATAAAACTCCTGTTCATGAGCTCGGTTTGAATCTCTGGAGAGATGTTGTAATTCATTCCAACAAAACCCAGGCTAGGCTTCTAGATACACTTCTTGAGCTTGTGCTTAGAGAAAGGAATGGTGAAGTAATAAATAGAGGTTTGATGAGAAATGTAATAAAGATGCTAATGGATTTGGGTTTGTCTGTCTACCAGAAGGACTTCGAGAAGCAGTTCCTTCAAGTTTCTGCAAATTTTTACTGTTGTGAGTCTCAGAAATTCATTGAATCTTGTGATTGTGGGGATTACTTGAAGAAAGCTGAGAGGCGTTTAAATGAAGAACTGGAAAGAGTATCTCACTACTTGGATGCTCGAAGTGAGTCAAAGATAACTAAAGTGGTGGAGGAAGAGATGATTGAAAATCATATGCACACTCTTGTTAATATGGAAAACTCTGGCCTAGTTAATATGCTCATGGATGACAAATATGAGGACTTGGGAAGAATGTATAACTTGTTTCGCAGGGTGCCTGATGGGCTCACAATTGTTAAAGATGACATGACTTCTTTTATACGGGATACAGGTAAGCAACTAATTATGGATCCTGAAAGGTTGAAAGATCCTGTGGATTTTGTGCAACGTCTCTTGGATTTGAAGGATAAATATGACAAGGTTATTACATTGGCATTTAACAATGACAAGGCATTTCAGAATGCCTTGAATTCTGCATTTGAACATTTCATCAATTTGAATGCACGGTCTCCAGAGTTCATTTCTTTGTTTGTGGACGACAAACTTCGTAGAGGGTTGAAAGGGGTTGGTGAGGAGGATGTCGAGGTCATACTAGACAAAGTCATGATGCTTTTCCGTTACCTTCAAGAGAAGGATGTGTTTGAGAAATATTACAAGCAACACTTAGCAAAGAGGCTTCTTTCTGGGAAGACTATATCTGATGATGCAGAAAGAAGTTTGATTGTTAAGCTCAAAACAGAGTGTGGATATCAATTTACTTGCAAGTTAGAGGGTATGTTTACAGACATGAAGACTTCTCAAGATACCATGCAAGGTTTCTATGCATGCCATGGTGATGAGTTGGGAGATAGCCCAACACTATCTGTCCAGGTGCTTACAACAGGTTCATGGCCAACTCAATCTAGTGCTCAATGTAATCTTCCATCAGAAATCTTGGGTGTATGTGATAAGTTTCGGTCTTACTATCTTGGCACCCACAATGGTAGGAGATTGTCCTGGCAAACTAACATGGGGGCAGCCGATTTAAAGGCAACATTTGGCAAAGGCCAGAAACATGAGCTGATTGTTTCCACATACCAGATGTGTGTGCTCATGCTTTTCAACAATGCTGATCGGTTGACATGTAAAGAGATAGAGCAGGCTACATTAATACCCGGGCCGGACTTGAGAAGGTGTCTTCAGTCTCTGGCCTGTGTCAAAGGAAAAAATGTTCTTCGAAAAGAACCAATGAGCAAGGACATAGCTGAAGATGATGCATTCTTCTTCAATGACAAATTCACAAGCAAGTTTTTCAAGGTAAAGATAGGAACTGTTGTTGCACAGAGGGAGTCTGAACCGGAAAATCTAGAGACTCGACAAAGAGTGGAAGAAGACAGAAAGCCGCAGATTGAGGCAGCAATTGTGAGGATCATGAAATCTAGACGGGTTCTCGATCATAATAGTATCATTACTGAGGTCACAAAGCAGCTGCAGGCACGATTTTTGCCTAACCCTGTTTTAATTAAAAAACGAATTGAATCCCTCATTGAACGTGAGTTTTTGGAGAGGGATAAAGTGGACAGAAAACTGTACCGCTATGTTGCCTGA

Protein:

Promoter(3k):

>AM07G002330.1
TTTGGTACTTTTGCCACAAATTAGGGTACAATTAATTTGTATTAACTAAGCACTAAAATATCCTCTTTGTAGTTGTCTTGGGATAATTGAAGTCAAAATAAAAGAGTTAATAGCTATCTTGGAATAATCGAGTACAAATGCAAAAGATTTAATAGTTTGTCTTGGGATAATTGAAGTTAAAATAAAAGAGTCTTTAGACAATTAATCTTTATTTTGGGTCATATAAAGGATATATTTGGAGAATTTTGGGGAATTGTACATTGATTTTTTAAAAGTACTAATGCTTTGAGAGAAAAATAAAAGCTGAAAGTACTAGAGTTTTGGAATGGATGGAGTATGATACAAGACCACACATTAAGATCTTAATTCGCCCTTCTAATAGACAAAGTCAACCTGACCATAAATAATTTGGGTTGGGCTAGATGGAGAAAATTATTTGACTCTCACCTTCGGAATAGCTTTTTATTTTTCACATATTTATCACCAGGGCAATAATTGTAGAGATGAATTTGTCTCTCCCGGTACTTCTACATAGATTTGTTTGGTGAGATCTAATTCCTAAATTTATCACTGGTAGTTTTTTTTTCATATTAAGCGGGGTCTTCTTTATTTTAGATTCTAATAAACTTTGTCGCTTGAATTATGGTTTAATCCACCGCCATTTTGTATTCTTTTCTCTTTCATTAATATGATGTGCTCTAAATAATATAGGCAAAAGTGCTCTCGGGGTCCCTTATCTTTATTTAAAGTAACGAATTAGTCCTTTATGTTTTTTTTGTCCCAAATAAGTCATTTATCTTTCAAATTTTTGACACATAAATCCTTTTCCGTCAACCTCCATCCAACTCTGTTAACGGTGCTGATGTGGCGTGCTGACTCATTAGATGTGCTTATGTGGCTGTCTAAAATATTATCCACCTCATATTGATTTAAATTTTATTAAAAATTAAAAACAAAAAATAAAAAAATATTCATATTCATTTTCGTGAAACCCAGATTTCTTTTTCTTCTTCCAAGCTTCCTTCGTTTCCTTCTTCTTCTGTTTTCGTTCCCAGATTTCCTTCTATTTCCTTCGTTTCCTTCTTCTTATTCTCCTTCTGTTTTCGTTTCCTTCCCAGCTTCCTTCGTTAGGGGTGTTCAGTGGTTCGGGAAAATTCAAACCAACCCACGATCCAATCCAAACCGATATGTTTGGTTCGGATATTTTTCGTGTTCGGGTCAAAATCGAGCAAATCCAAACCAACCCGTAGTTGTTTGGATCGGGCAACGGATTTTAAAAATCAAATCCGCGAACCCGAACCAACCCATATTACGGCATAACAATTTTGTAATTTTAGATGCACACGATTTTATTTGCTTAGAATTTTTACCTTAATAATTTATGATTAAGTTGTAAAATTTTAATACTATGAATGGGAAGACTATTAGTGGATTTGAGTTTGATTTCGTGTGATTTTCAATTTTTTTAGCTATTTAAAGTGTTTGAATATCATAAAAAAGTGTTGTTTTTTATATTTTAGAAAATTAATATTTTAGTGAATGACCCGTGAGCCCAATCCAAACCAACCCGTCCAATATCGGTTCGGTTTGGTTCGGATTTTGGAGGAAAAAATGTAAAATCCGAACCAACCCAAACCGAATAATTATCATTGGTTCGGGCAACGGATTTGGTCAAATCCGATCCAAACCGACCCACGAACACCCCTATCCTTCGTTTCCTTCGATTTTGAACCAGAATTAGGGATTTCGATTTCACAAATTAGGGATTTTGTTTCACAAATTAGGGATTTCGTTTCACAAATTAGGGATGTTCGCGTTTTCGTTTCTTGAATTTTCTGGAATCTTTTTATTTTCGTTTCCAGAAGTTTCTGTTGTTGCTTCGATTCCAGAAAACGAAACGAAAATGATTGATGTTGGGAAACGAAAACGAAACGAAGAAGAACACGTTGGAAGAAGAAGAACGAAAATGAAACGAAAATGAAACGAAAATGATTGTTGGGAACGAACATGATGGAAGAAGAAGAACGAAAACGAAAATGTTGTTGTGTTGTTGTGTTGCTGGGAACGAACACGATTGAAGAAAACGAAACGAAAATGATTGATGCTGGGCATGAAGAAGAAGATGGAAACGAAATTGCTGGGAATGATTCTAGATTCGGATGGAAGAAGAAGAGGGAAGAAGAAGAGGGGAGAAATTAGGGATGAGCATGAAGAAGAAGATGGAAGTAATTTAGATTAAAAAAATATTAATTTAAATTAAATAATGAGTCAACACGCCACATAAGCATAAACTGAATAAAAAATATAAATCAAACAATGAGTCGGCATAATTAAATCATTTATTGTGATGCTTTTACATGCCATTTAAATAAATAAAAAACTTGGGCCGACTAGGTCTACGATCTACAACAACATGACAAGTGCTATCCGGTAAGAATATATTTCCACGAAATGTAAGAATTGCCTACATGGCTTTTACTTTTTTTAGGATATATGTGGCTTTTACTTTGACAATTCTTAACTCGTGTTTTGGCAAAATACACATACGTGAAGTTACGCCTCATTCTTGAGTTTCGTCTCGTACCAAAAAGGTATCTCTCATACAAAATTAACCCTCTCAATTGAATTGTCAAGAACAATAACACTCTAAAAAGAATTTTGGGATCTAACATGTTACAAAAATTCCCATTTTGTCACAAAACCAAGTCCTCCAAAGTAAAGTGAAAAAAATCTTGTGAAAATTCTCACTACTCAACAGTAACTAACTACCACTCACCATCATTCATATTCATTCTTCATCTTTTTCCTTTGCTTCATTTCTCAAAATCTCATTCCCAAATGAAACCCTAACTTCCCCCAAATTCCTATTCCCTCTACTTCTAGGGTTCATCTTCTCATTTCAATTTCTCCGATTTCGTTGTTTCGTCGTTCCGTTTCGTCTCACCGATTGTGAATTGAGTTCGAATTCGAATTTACGATTCCTTAGGGTTTGGCAGAACG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00888.25	Cullin	29	631	4.30E-221
PF10557.12	Cullin_Nedd8	663	723	1.00E-24

Gene family

Gene family	Subfamily
Ubiquitin Family	Cullin
Ubiquitin Family	Cullin

Gene Ontology

GO term	Description	Category
GO:0031625	ubiquitin protein ligase binding	Molecular Function
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0031461	cullin-RING ubiquitin ligase complex	Cellular Component
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0016567	protein ubiquitination	Biological Process

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR001373	Cullin, N-terminal
IPR016159	Cullin repeat-like-containing domain superfamily
IPR019559	Cullin protein, neddylation domain
IPR036317	Cullin homology domain superfamily
IPR016158	Cullin homology domain
IPR045093	Cullin

trEMBL

trEMBL term	Description
A0A1S2XHC8	_

SwissProt

SwissProt term	Description
CUL3A_ARATH	Cullin-3A

KEGG

KO	Description	Enzyme
K03869	cullin 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G26830	cullin 3
Medicago sativa L.	MsG0680030747.01.T01	_
Oryza sativa L.	LOC_Os02g51180.1	cullin, putative, expressed
Cucumis sativus L.	Csa017448	_
Glycyrrhiza uralensis Fisch.	Glyur000496s00030947.1	_
Codonopsis lanceolata	Cl_chr01_19310T	_
Arachis hypogaea L.	AH20G31660.1	Cullin-3B like

Expression pattern