Gene detail

Detail information of Am07G001800.1 Annotation

Gene ID	Annotation
Am07G001800.1	SIN3-like 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G001800.1	mRNA	Chr07	5981051	5994434	-

Sequences

CDS:

>Am07G001800.1
ATGAAGAGGACCAGAGATGATATTTACTCTGGTTCTGGTTCTCAATTCAAACGCCCCTTTAGTTCTTCACGTGGTGATTCCTATGGCCAAGCCCTAGTCCCTGGAGGAGGAGGTGGAGGTGGTGGTGGCGGAGGAGGAGGTGGTGGTGGTAATGGCGGCGGGGGAGGAGGTGGTGGGGGATTATCTTCTTCCCAGAAACTGACTACCAATGATGCCTTGTCCTATTTGAAGGAAGTGAAAGACATGTTTCAAGATCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCCCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAACTATTCAAGGGACACAACAATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGATATGAGATAACGCTTGATGAGGATGAGGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGACGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGACATCGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTTGAGGAGTTCACGAGGTTCTTACCAGATACTTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATCCATTGCAGCGCTTTAATGAGCGGAGTTTGATGGCACCCATGATACGGCAAATGCAAGTAGACAAGCAACGTTATCGGCGGGACAGATTTCCTTCTCATGATCGTGATCTGAGTGTTGAACGCCCTGAGCTGGATGATGATAAAACAATGGTGAACATGCACAAGGAACAAAGGAAACGTGAGAGTAGGGATAGAAGAATTCGCGATCAGGATGAGAGAGAACCTGATCTTGATAACAGCAGGGATTTGAACTCACAACGCTTTCCTGACAAAAAGAAATCTGTTAAAAAGACTGAAGCTTATGGGTTGGCTTCTGACTTTGCTTCTCATGATGACAAAGATGCACTGAAGGGCATGTACAGTCAAGCATTCATTTTCTGCGAGAAAGTTAAGGAGAAGTTGAACAGCGCTGATGACTACCAAACATTCTTGAAGTGCCTTCACATTTTTAGCAATGGAATAATAAAAAGGAACGATTTGCAAAATTTGGTAACCGATTTACTTGGGAAGTATTCTGATCTCATGGATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTGTCTACTGATGGTCATTTACCAAGACCATCCAAGTTGGAGGACAAAGACAAAGAACATAAGCGTGAGATGGACGCAGCTAAAGAGAAGGAAAGACACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGATTGCAAACGTTGTACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACGGCTAGTCAGCGATCTGAGCTCGGTGCCCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGATATGCTATTGGAGTCTGTGAGTTCGGCTGCTAAGCGAGCAGAGGAGTTGTATAACAACATTAATGAAAATAAGATCAATATGGAAAGTCTGAATCGTATTGATGATCACTTCACTGTTCTAAATTTAAGATGCATTGAACGTCTTTATGGTGACCATGGTCTTGACGTCCTAGACATACTGCGTAAGAACCCCACTCATGCTTTGCCTGTAATATTGACCCGATTGAAGCAGAAACAGGAGGAGTGGAGCAAGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATTAAAGAAATTAAAGAGAAACAACAGAAAGAGGATGACATCGTTCAGTCTATTGCTGCTGGAAATAAACATCCTCTAATGCCACATTTGGAATTTGAATATTCTGATACTGGAATTCATGAGGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAGGTATTCTCAAGTAAAGAATTATTCAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTACTTCCCAATCACATGGGACAGAAAGGGTAGAGGACAGGAAAGCGGGCCATAATGTTCGCAATTTTGTTGCACCAAATGTAGGAGGTGATGAAAGCCCTCACAGAGACTCGATGTCAATAAATTCACGGTTACCAAAATCTGACAAGACTGAAGTTGAGGGTAGAATAACCGAAGTGAAAACCATTCACCGAACTAGTGTAGTAGCCAATGATAAAGAAAATGGTTCTGTTGGTGGCGAACTTGTTTGTAGAGATGATCTGTCGTTGGATAAAGGGCAGAAAAATGTTGAATGCACTGATAAAGCATCAGGGTTTGGTAAACAATTTGCCTCTGATGAACAAGGAGTGAAAAACAATACACCTATTGCAATTAGAGGAGAAAGCAGCCTGAACAGAACCGCCTTAGATATGTCTCCAGGCCGTGTCCTTACTCCACCTCGACCTATTGATGCTGACGACTCCGTAGCCAAGCCTCAGAGTGTTAATGTACCTTTGGTGGAGGGATGTAACACTGCTGCTTCAGTACCGGTGGCCAACAGGGTGCTAATTGAAAACGGTAAAGTTAAAAGCCATGAAGAATCTTCCGAGCCTTGCAAAATTGAAAAAGAAGAGGGTGAATTATCCCCAAATGGTGACTATGAGGAGGATAATTTTATTGCCTATGGAGATTCAAATGTGCAATCAATAGAAAAGTCGAAACATGATAGTGATGGAAGGAAATATCAGTCTAGAAATGGAGAGGACGAACACGGTCCAGAAACTGGAGGCGATAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCGGGTGAAGATGTCTCAGGCAGTGAGTCTGGTGGTGATGAATGCTCCCGCGAAGATCATGAGGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCCGAAGGGATGTGTGATGCACAAGCTGGAGGAGATGGCTCATCTTTGCCGTTGTCCGAGAGGTTCCTTTCCTCTGTGAAGCCTTTCACAAAGCATGTTTCAGCAGTTTCATCTGTTGAAGAACTGAAGGATTCAAGGGTGTTTTACGGAAATGACGATTTCTATGTGCTTTTCAGGCTTCATCAACTTCTTTATGAAAGGATCTTATCTGCAAGAACAAATTCTATGAGTGCTGAAACGAAATGGAAAGCAAAAGATGCTAGTTCCCCAGAAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTCGATGGATCTGCCGAAAATTCAAAGTTTGAAGATGAATGTCGAGCAATTATTGGGAACCAGTCTTATGTGTTATTCACATTGGACAAGCTGATATATAAATTGATCAGACAGCTTCAAACTGTTGCGACTGACGAAGTAGACAATAAGCTTCTTCAATTATATGAGTATGAAAAGTCTCGGACACCTAGGAAATTAAATGATTCGGTATATCATGCAAATGCACATGTCATCCTTCACGAGGAGAATATATATCGTTTTCAAAGTTCCTCTATCCCCTCTCAGCTGTCCATCCAGCTCATGGACAATATGATTGAAAAGCCTGAGTTTTCTGCGGTTTCTATCGACCCGAATTTTTCTTTTTATCTGCACAATGATTTTCTGTCTGTCTTACCTGGCAAAAAGGAACCTCAAGGCATTGTACTCCAAAGAAACAAACGCAAATATGGAGACTTAGATGAGCTTTCTGCTATTTGTGCTGTCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTCGACACACAAGATTTTTTCTTCCGTCCAAGAAGAAAAAGACGAATGGCATCAAAGACGACATCTTCTCGGTCTCGTAGGGAGAGAGAGGAAAGATTTCGCAAATTGGTGGCATCGTCGTAA

Protein:

>Am07G001800.1
MKRTRDDIYSGSGSQFKRPFSSSRGDSYGQALVPGGGGGGGGGGGGGGGGNGGGGGGGGGLSSSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPFGRNPLQRFNERSLMAPMIRQMQVDKQRYRRDRFPSHDRDLSVERPELDDDKTMVNMHKEQRKRESRDRRIRDQDEREPDLDNSRDLNSQRFPDKKKSVKKTEAYGLASDFASHDDKDALKGMYSQAFIFCEKVKEKLNSADDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKYSDLMDEFNDFLERCENIDGFLAGVMSKKPLSTDGHLPRPSKLEDKDKEHKREMDAAKEKERHKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNINENKINMESLNRIDDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSIAAGNKHPLMPHLEFEYSDTGIHEDLYKLVRYSCEEVFSSKELFNKIMRLWSTFLEPMLGVTSQSHGTERVEDRKAGHNVRNFVAPNVGGDESPHRDSMSINSRLPKSDKTEVEGRITEVKTIHRTSVVANDKENGSVGGELVCRDDLSLDKGQKNVECTDKASGFGKQFASDEQGVKNNTPIAIRGESSLNRTALDMSPGRVLTPPRPIDADDSVAKPQSVNVPLVEGCNTAASVPVANRVLIENGKVKSHEESSEPCKIEKEEGELSPNGDYEEDNFIAYGDSNVQSIEKSKHDSDGRKYQSRNGEDEHGPETGGDNDADADDEDSENVSEAGEDVSGSESGGDECSREDHEEEEDIEHDDVDGKAESEGEAEGMCDAQAGGDGSSLPLSERFLSSVKPFTKHVSAVSSVEELKDSRVFYGNDDFYVLFRLHQLLYERILSARTNSMSAETKWKAKDASSPEDPYSRFMNALYNLLDGSAENSKFEDECRAIIGNQSYVLFTLDKLIYKLIRQLQTVATDEVDNKLLQLYEYEKSRTPRKLNDSVYHANAHVILHEENIYRFQSSSIPSQLSIQLMDNMIEKPEFSAVSIDPNFSFYLHNDFLSVLPGKKEPQGIVLQRNKRKYGDLDELSAICAVMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRRKRRMASKTTSSRSRREREERFRKLVASS*

Promoter(3k):

>AM07G001800.1
CATATTATTTTATTTTTTGTGTCTTTCTCTCTTCAATTGATTTTTTTTTTGAGATTAAAACTGTGGAGGGGGAACTTCACAGCCCCGGCGAGAGAGCGTGGCAATCGGTCATCTCACCTCCCCAAGGAAATACTTTTCGTGAGAATTGAACCCGGGAGCAAACCGAGTCGACCCTTACGGACCATAGCCTGCTCACCACTAGGCCAAATCCATTGGGTTCTTCAATTGAAATTTTACGGTGATTGAAGAGGATCTTTTCCCGATCCAAATATCCGCATTAATAATATATTAAATATTAACAAATAACAAAACTACATATATTGAAAACATGTTTAAGGCTTCGGTTGGTAAAAAGTAGGGGACAACAGATAAGCTAGAAGATAATTAATTAATGAGCGAATAGCTGATAGTGGATGAGCTAGCAGACAGTGGATAATCTAGCTGATAGCAAATTACGTGTTTGGTAAAACTAGTGGTTAAAGTAGTTGATAAATGCAAAAAAAACATAAAAAGATAATTAATTAATGATTAAATTATTTAATGATGACAAAATGTTTAATGAGGAAAGAGAAGTAATTTAAGGAAAATAATAAGGGTAAAAGTGCCAAAAAAATGAACACTATACGCTATCTGCTAAAACGCTATTTGAAATAGCATTTCAAAAAACACTAATCGCTACCAAAAAAACGCTAAAAGCTAGTGGTTACTAAACATCTGTACTCGTCACCCCGCTAGTCAAATACGCTAGCCTCATCTGCTATCTACTAGTGGATGAAACGCGCAAAATAGAGCCAAAGTAATATTATAGAGCTTGGGGGTGACCATGGCACTAGTGGGCTACCCCACTAGCTCCGCCCCTGGTGAGAACCTCTCCATTAATTGGAAAGTGTTGCAATTGGAGAGAGAAAGACACAAAAAATAAAAAAAAATCATATTTTTTAATGAATATTATTTTATTCTTTGTGTCTTTCTCTCTCCAACTGAAATTTTAAAGAGGATCTTTTCCCGATCCAAACATCCACATTAATAATATATTAAATATTAACAAATAACAAAACTACCTATATTGAAAACACGTTTAAAAATGAAAAGCTGAAAACCTAAATAAGAAGAAGTGAAAGAAGAAGCTGTGGTAGTTTAGTGTTCTCTAGAAGAGTTATTATCTTAAATGGTATAAATATTATTTTTTTCATTTCTTCCCAACTATTTGATAGGGTTCCCTAAAGAATTTCATTTAATTGCTCATACCTTGAGACATGTATATACTCTATGATTAGCCTTTAAATTGAGATGAAGATAACTAGTTATACTGCGGTTTTGATTATTAATAACATAACATAACATTTTTACTTTAAAAAATGAAAAAAAGAAACATAGATTTGGTTAGCATATTTGGATCGGAGTTTGTTGTAAGTATACATCAGACATACTTAAAGTGGGACAAGTTTAACCAAGTGTATTGGCATACTTTACCATCTCTCATTAAATACTTAGCGCACAAAACAACAAACTATTTATTTGTAAAATGAGTCGAGATCTTTTCCATTTGCTTTCTTCATTTATTTTCTCCATTATTATAGTTTTAGAGTGTTTTATGTGTATCAGAAAAAATTGAGAACATGATAAATGGAGATGTTCTTTACTCTCATAAAACACCTTTTTCTTTTGGCCGCTAAGAAAAAAAATCCGACATTGTGAGTATTAGATCGGGTGGTTCAACCATATCAAAATTTGACCAATTAGATAGTTAGTTCAACCTCAATTAGACCGCAGTCTAGTTGAACCACTCAGAGCCATACTGAACCACCAATTGGAAAGGTTAAACCGTTCAAAATGATATTTTTGATTCTTTATTTACTTTTTCTCCAAAATTTTATATTTATTTATTTATTAGTCATTTGATTTAACTATGGTTGAAGCAAATGAACCAATTCAATTATAACCCGGAACTCTGAAAGTGACTCCCAATTCAATCTCCCATCCGACTTTAAAACCAATGCAAAATAAATTTTTTATAAAAAGAGTTTAATTTCTATACACATACCGTGTAAGGCTTTTACAACCACAACCAATCACAATTCATGGAGTGGTTGGTTACCAATTGACTAACCGGTGGTTACCAATTGACCAATTTATTTTTAGTGATGTGTCGGCTTGTAATCGGTAGATAATGTAAACATGTATACACCTATTTTGTAATCGGTAGATAATGTAAACATGTATACACCTATTTATTTATAAATTAAATCTTTTTTTTAAATGAAAAGTTGTAAGACAATTACACAAGAGAAGACAAAAGAAGAAACCATGGGCTTGGTTTGGTATAGTATCCATGGATTGAAAGTTGACATAGTTTTAACCCAACCCGACCCGACCCGACCCATATAACATAAAAAGCTTAAAGAACAAACAACAACAAAACTCGAAAGAAGCAACCTTCTCACATTCTTTCTTCTTCACACATAAACAAACACACACACACAACATAAGCTTATTCCTCATTCACATGCTTCTAACGTAAAATCACTTTTTTTTAAAAAAATGTTTCATTTTCATAAAAAAATTTGAGTTTTGAGTTTCAGAATTGCACATATCACCACCGCTTTTCCCACCCCAAAACTCTTTCTTTCTCTCTCTTTTCTTTCATTTCATCTCAATTCCTCATTTTCTAACGTAAACAACGTAAGAGAGAGACACACAAGGAACTTTTTCTCTCTTGATTTTTGTTCTCATAACCTTTTCTGTGTTGTTCTTCTCTCCGATCAAACCCTCTCTTCACTGTTTCTTCTTATCTTTTAAGAGATCTATCTACTCGACTTTTTTTCCCAGCAAATTTTCCTGGGGAAAATTTGGGAAACCGGTAAGGAACAATTTTATTTCCCTTTTTTACTATCTGTGTTATCTTGTTATTTCTTCAATTCAATGTTATTGTTCTTGTTTTTGTCATTGATGTTGTTGTTTAAATCAATTGAATTGTGTTTTTTTTATGGTTTTGCAGGG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF16879.8	Sin3a_C	1118	1366	7.20E-54
PF02671.24	PAH	88	132	3.50E-43
PF02671.24	PAH	172	216	3.50E-43
PF02671.24	PAH	371	415	3.50E-43
PF08295.15	Sin3_corepress	484	576	1.30E-34

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	SNT4

Gene Ontology

GO term	Description	Category
GO:0045892	negative regulation of DNA-templated transcription	Biological Process
GO:0000118	histone deacetylase complex	Cellular Component
GO:0000785	chromatin	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process

InterPro

InterPro term	Description
IPR039774	Transcriptional regulatory protein Sin3-like
IPR031693	Sin3, C-terminal
IPR036600	Paired amphipathic helix superfamily
IPR003822	Paired amphipathic helix
IPR013194	Histone deacetylase interacting domain

trEMBL

trEMBL term	Description
A0A8B8LTD0	_

SwissProt

SwissProt term	Description
SNL2_ARATH	Paired amphipathic helix protein Sin3-like 2

KEGG

KO	Description	Enzyme
K11644	paired amphipathic helix protein Sin3a

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G15020	SIN3-like 2
Medicago sativa L.	MsG0680030660.01.T01	_
Oryza sativa L.	LOC_Os01g01960.1	transcriptional repressor, putative, expressed
Cucumis sativus L.	Csa012578	_
Glycyrrhiza uralensis Fisch.	Glyur000271s00015160.1	_
Codonopsis lanceolata	Cl_chr01_21900T	_
Arachis hypogaea L.	AH20G30850.1	Paired amphipathic helix protein Sin3-like 2 like

Expression pattern