Gene detail

Detail information of Am07G001390.1 Annotation

Gene ID	Annotation
Am07G001390.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G001390.1	mRNA	Chr07	4809916	4812229	-

Sequences

CDS:

>Am07G001390.1
ATGTCAGAAAATATGTATCCAAAATTGTTATTTGAACATACCCATTTGAGAATGGCTTGGATTAAACATCAAATCCAACAAAAAGATGGTTACTTGATGAACAACTACCCACCACCAACACCATTTTCACCTCCGTTCCCTAGTGATGTTTTCCACAAAGAACCGACAACAACATCTGCAACAACAACATCTTCTGGTACTAAAATTAGTCCAGCTGTTCTTTTCATCATAGTGGTACTTGCAGTTCTATTTTTCATATCTGGTTTACTTCACCTACTTGTTAGATTCCTCATAAAGAATCCATCTTCATCAGCATCAACACAATCCAATAGACACAATGAAATTTCAAGCACTTCTGATGCTCTTCAAAGACAACTTCAACAGCTTTTCCACCTTCATGATTCTGGTCTTGATCAAGCTTTTATTGATGCACTTCCTGTTTTTCAATTCAAGGAAATTGTTGGTCTTAAAGAGCAATTTGATTGTGCTGTTTGTTTATGTGAGTTTACTGAAAAAGATAAGCTAAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATTGATACTTGGTTACTTTCAAATTCTACATGTCCTCTTTGTAGAGGAACTTTACACACTCAAGGTGGTGGATTTTCTATGGAAAATCCAATTTTTGATTATGATGATATTAGAGAAGATGATGGTTTTCCTTGTAATGTGGAAAATGGATTATGTAATAGTAGACAAAAAGGAATTGTTGTTGAAGAAAGTTTAGTAGATAGACAAAAAGCACTCGAAAGAAGCGTCCGTGCTTCAGAGGTTTCTGTAAGACTTGGTAAATTCAAGAAGGTGAATGTGGAAGCTGGGAATTTGGAAAATGAAGTTGGAGAAACAAGTAGTAGTAATTTGGATGCTAGAAGGTGTTATTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGATCTTAGAGTGGCTTTGAAAGATGAAAGGAAAGATCATGATGCTAGAAGGATTACCAAAGGAACAGAAAATGTTGAGAAGTTTTCATTGGAAGGGGATTTGGAAGGGAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCTAAAATATGGTTGTGGCCTAGGAAAGGAAAGTTTTCTAGTTCTTTAGAAGATCATACAGGGATGCCAATGCCATTGCCATCTTATCCTAACAGGGAATTGCATGGCATGAGGGAAACAGATCATGGGGTGTGA

Protein:

Promoter(3k):

>AM07G001390.1
AGTGAAGAGGATCTCCACCCCTCTGAAACACCCAAAAAAGTATAATAAATAAATAAAATGTAATTATAATTAGTTGTTGATAAACTTTGTTTAAGTTTTGTTTATCTTAAAAACTAAAATAATCATAACGCGCGCTTTTTAACTATTTTGTGCACCATAAAAAAAATTTATAACTCAAAAGTTTATTACAGTTTTTGTGGTTGGGGTCACTTTAACCCGCTCTCGTATTCAGGAAAAAGAGGTTTGACTAATCCAGAGTTTGACTGAGAGATAAGTAAAGTTACTCTCTTAGTATTAAGTATGTTAATTGATCTGAGCCACTAATTCAATCAGTTATCCACTTGAATGGGTAGAAACCGTCCAATTTTTGAAAAACTCAGTGTATCGACGACCCAGACCAGTCCACATGTTAAAAACTTATATGTACATAAGTAAAATTATCCGTGATTTAACAAATGACTTAATACCATAATTGAGTCATTCGCAAGTCTAAGTTTTATTAAAATGATTCAAGTAGACCATGAGAAGGTGGCAATCCCAGTTTGGTTCCCAATCACAAGTTTTATTAAAATGATCTTTAGTAGGGCTACGAGGGTCATAAAGGGGTCGTGTATTTCGAGACTTTGTTCATAGGGTGCCTCTGTAATGTTTGCTGAAAATCCCCTTTGGAGCTTGGTGTATTGGTATTCCTGATATCATGTTTTAAATGTACCGATTTGGTTGAGGATTAATAGAATCAACATCATCTGAGTTATGAGCAGGCATCTAGCACAATATTGATACAATAAGATACCTGCGGAGTAAATGGTCAAAGGTACCAAGAAGTGGAGTAAATGAACAAGATGGAAGTAGTAAACCACTTGATGGGGATTCTTATCCAAAGATTGTGATAAACAATGATAAGTATCAACAGAAAGGACACTCTATACGCCCACTTGCCAAACTATTAGATAAGAGGATGACTGTGTTGTTGTTGGGAATAACTCCTCTAATATCACGGTTGGGGAAAACCGCACACGTCGGCGGATTAACCCACATGCCCAATGCCCAAGGATCTTTGATGAAATATATAGATGAACACACAGTAAGAATAAAGGAGAGAATAACACAAATAGTTTACGTGGCTCGGCACCTCTTGCCTACGTCCACGGGAACACTTCAATATAATTCATTCATCTTCTCAATATATGATTACAACAATTTGTAACTCAACCCCAATATGTGTATCACCTTAGAATACTCTTCTCACTCATGAATGATAACACTCACATCTCACACAACAAATGATCACCGGCATTCTCCTCTACCTAAGACCTGGCTGGAGATTCTTCAACTCTCTACATTGTCACCCAAGAATGGGGATGCCTCATCTCTCCATTTGGGCATATCTCATCTCTTCACAAGTTTCTCTATTTATAAGAGGGAACATGACTTCCATGCATGCATAAGATTTATTACATCCACCCACATTGTGAAATATATCTCTTAAATTTCCACTCTTTTGCATTTTCCTAGAAATTATAATTGACTATTTCCAATGATTGTCAATGCAAAGTTGTACTATGGTTTTGCTTATGTCACATTTATGTTATATATGTCTTCGATAGATCAGCGATTAACTATTTAGCCAAAACAACTCAAGTGCTTAAAATAAAAATAAAAAACAATTGATATTACATGCATCTTATAACATCTCCAATGGGAGTACCAAAAGGGGTAGTTACCCATTAAAAAGTCGTGTCAAATAGGCACTCCCATTGGGAGAAAAAATTAAATGAGTACCTATTTAGTATAGTACCTTTATAAGTACCCTTTCTCTCCTCTTGTAGTGGGTCCATACGTCAAATTTCAATGGTAAAAAATAATATGTAGTTATTAGTGAGATCTATTTGTAAATATTTTTGAGGTGTTGGATCGGAGAAAATGAGTGCTTAGTAGGTATTAGTTTTAAAAAAATTGTAAATTAGTGATGTATACATATAAGATCCATTTTAAGTATCGAAATTGGAGAGCTCTATTGTGATGATCTAATCTACCTCGAGAGTAGGTTGATGTTTATGAAACTCTAATACTTCAAAAATTATGATGTTTCGTGTCCAATACGCATCCTATACGATACACACTCGATTCTTCTCAAATATATCTTCAAAACATATTTATCAACTAAAATATGATCATCACATTGATGTTTATCAACTAGATATAATATATTCTAATAAGTGTAGACAAAATATATGTTACTGCCCACTTGTTATGATTGCACTTGGCTTCTTAATGTTTACACTTGTGTAATGTTTTTGTAAAAGTTCTGAACTCTTAACTATTTATGTTGCACCCTTGACTAAAAAAAAGGTGGAACAAAATGAAAATGAATGGCACGACCATTAAGGCGAGTGGGATATTAAAATTGTTGAGTGTTTGTTTCTTTTTGTCATCCCTTACCTCGCACTTCGGGAACTGCTTTTTCCTTTGCTTCCTTCCTTCCCCTTTCACAGTCTTTTGTTTGGATTCTTCTCTCCCTTCTTTCTAACCACTCAGACGATTTTGGATCCATCACAACACAGCCAACAGAATACATCTCACACTTCACTTTTCCCTTTCAACTCCACTCAACAACTCACCTTCTCCTTCTCTTTCACTTCCTTCAACTTCACTTCAAAGCCTCAAGAATCAACACAAGTTTCCATAAACTTGAAAAGAGAAGAAGAAAATACTCAAAAGGTGCACTACCCTTTAACCACTTAGGTGAGTTGAGTTTAGTTCCAATATATATTGTGCTAAAAATCAATTCTTTCATTTGAACTGATTTGGACCAATTGATATGCATGTAAGATTAAGTATTCAAATCTAGCACTCTACTTGTTTGATTTATTTCCCTCAAGTTTTGAGTGTCAAAAGCTACAAGCTTTGAGAACTTTTGTTGTATTTAAGAAAGTGTGAAGATGTTACTAGGATTGTGTTGGTTTAAGGAATATGTTTTTGTTCTTGTGATTTTCTAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	161	204	1.40E-12
PF17123.8	zf-RING_11	161	190	4.10E-10
PF12678.10	zf-rbx1	159	204	3.10E-09
PF00097.28	zf-C3HC4	162	203	5.20E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0031625	ubiquitin protein ligase binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0004523	RNA-DNA hybrid ribonuclease activity	Molecular Function
GO:0016746	acyltransferase activity	Molecular Function
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

trEMBL

trEMBL term	Description
A0A1S2XH64	_

SwissProt

SwissProt term	Description
ATL46_ARATH	RING-H2 finger protein ATL46

KEGG

KO	Description	Enzyme
K10663	E3 ubiquitin-protein ligase ATL4	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G40250	RING/U-box superfamily protein
Medicago sativa L.	MsG0580025816.01.T05	_
Oryza sativa L.	LOC_Os02g50930.1	RING-H2 finger protein, putative, expressed
Cucumis sativus L.	Csa010795	_
Glycyrrhiza uralensis Fisch.	Glyur001232s00031531.1	_
Codonopsis lanceolata	Cl_chr05_05550T	_
Arachis hypogaea L.	AH05G30920.1	RING-H2 finger protein ATL46 like

Expression pattern