| Gene ID | Annotation |
|---|---|
| Am07G001230.1 | methyl-CPG-binding domain 9 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am07G001230.1 | mRNA | Chr07 | 4138056 | 4151885 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00628.32 | PHD | 87 | 141 | 6.30E-20 |
| PF00628.32 | PHD | 1305 | 1351 | 6.30E-20 |
| PF15612.9 | WHIM1 | 1398 | 1442 | 1.50E-11 |
| PF01429.22 | MBD | 276 | 329 | 5.50E-11 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | PHD |
| Ubiquitin Family | PHD |
| Epigenetic Regulators | MBD9 |
| GO term | Description | Category |
|---|---|---|
| GO:0009648 | photoperiodism | Biological Process |
| GO:0001763 | morphogenesis of a branching structure | Biological Process |
| GO:0009791 | post-embryonic development | Biological Process |
| GO:0003006 | developmental process involved in reproduction | Biological Process |
| GO:2001141 | regulation of RNA biosynthetic process | Biological Process |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR019786 | Zinc finger, PHD-type, conserved site |
| IPR001965 | Zinc finger, PHD-type |
| IPR019787 | Zinc finger, PHD-finger |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR028942 | WHIM1 domain |
| IPR001739 | Methyl-CpG DNA binding |
| IPR003888 | FY-rich, N-terminal |
| IPR003889 | FY-rich, C-terminal |
| IPR016177 | DNA-binding domain superfamily |
| IPR036427 | Bromodomain-like superfamily |
| IPR001487 | Bromodomain |
| trEMBL term | Description |
|---|---|
| A0A3Q7X1I8 | _ |
| SwissProt term | Description |
|---|---|
| MBD9_ARATH | Methyl-CpG-binding domain-containing protein 9 |
| KO | Description | Enzyme |
|---|---|---|
| K22768 | methyl-CpG-binding domain-containing protein 9 | [EC: 2.3.1.48] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G01460 | methyl-CPG-binding domain 9 |
| Medicago sativa L. | MsG0380016407.01.T01 | _ |
| Oryza sativa L. | LOC_Os02g09920.1 | PHD-finger domain containing protein, putative, expressed |
| Cucumis sativus L. | Csa009218 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000473s00018949.1 | _ |
| Codonopsis lanceolata | Cl_chr05_05810T | _ |
| Arachis hypogaea L. | AH15G22890.2 | Methyl-CpG-binding domain-containing protein 9 like |