Gene detail

Detail information of Am07G000790.1 Annotation

Gene ID	Annotation
Am07G000790.1	Pectin lyase-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G000790.1	mRNA	Chr07	2495941	2500868	+

Sequences

CDS:

>Am07G000790.1
ATGAAGAGTATCATGAACCTAAACAATATTACATTGATCATTGCAATTGCCTTTTGTGTCTTGTCTTCCAGTGCCACAAGAAGCAACCATTGGAGGAAACTCAAAGCTGCGTCTTCTACTTTTAATGTATTAGACTATGGTGCTAAAGGTGATGGACATGTAGATGACACAAAGGCCTTTGAACAAGCATGGGCAGCTGCTTGCAAGATGGAGGCCTCAACAATGGTTGTTCCATCTGGTTTTGTATTTCTGGTGAAGCCAATTTCTTTCTCAGGCCCAAATTGTGAGCCCAACATTGTTTTTCAGCTAGATGGCAAAATAATTGCACCTACAAGCTCTGCAGCTTGGGGCTCAGGTACCTTACAATGGCTTGAGTTCACTAAGCTAGAGAAGATTACAATCAAAGGTAAAGGTGTAATTGATGGTCAAGGCTCGGTCTGGTGGAATGACTCTCCCAATAAACTGCCAAGTACCAAACCAACGGCACTTAGGTTCTATGGAAGTAATGGTGTAACAATCACCGGAATAACCATTCAGAATAGTCAGCAAACTCATCTTAAGTTTGATTCATGTACAAATGTTCAAGTCTTTGATATAACAGTTTCATCACCTGGTGATAGCCCAAATACAGATGGAATCCACCTTCAGAACTCTCAAAACATAGTCATCTATAGCAGCACACTTGCTTGTGGGGATGACTGTGTCTCGATACAAACTGGATGCTCAAACGTGTTGGTACACAATGTCAATTGTGGACCTGGTCATGGAATCAGTATTGGAAGCCTCGGAAAAGAGAATACCAAAGCTTGTGTTACAAATGTCACGGTCCGTGATATTACCCTAAAAAACACCTTGACCGGTGTGAGAATCAAAACATGGCAGGGAGGTTCCGGCTCAGTCCAAAATATTATGTTTTCCAACATTCATGTTTCTGATGTTCAAACTCCAATCATGATTGATCAATATTATTGTGATGGTGGACATTGTCAAAATGAAACATCAGCTGTGGCAGTATCAGGCATAAATTACGTAAATGTAAAGGGGACATATACTAAGGAGCCTATTTATTTTGCATGCAGTGACAGCTTACCTTGTACTGGCATAACCCTAGATACCATAGAGTTACAATCAAGTCTAGAAAATAAGAACTCCAATGTTCCTTTTTGTTGGAAAGCATATGGAAAGTTAAAAACTGAAACAGTTCCTCCTGTTGACTGTTTACAAAAGGGAAACCCATCAAACTTCGGATTCAATTCCAACAAATATTCTTGCTGA

Protein:

Promoter(3k):

>AM07G000790.1
TTCTGCCGGAATCCCACCGCCGCCGGAAACTTCCAAAAGCTCACGGCAACTCCCACCGCCTCCCGCCGGAACCCCATACCACCTTGTGTCGCTCCTCCGCCGCCGTCAACTCCCACAGTATTTCTTGCGGTCGTTCCCGATCTCTCTCCTACTGATTCACTTTCTCTCTCCTTCCACTGCTTCTCTCTTCCTTCCACGTTCTCTCTCTGAGATCTCTCTAGCTCTCCCCAAGATCTCTCTCTCTCCAATATCTCCCTCTCTCTGAGATTTGTTTCTTTCTCTGCAAAAACGCAACCTACATAAATACGAACCGCTACACGTGTCTTGTAAGTTGCACCCCATAATCACGTTTGTTGAAGGTTTCAGTTGCAATTTTTTATTCAGAATCCAAACCGGTTATTTACCAGTTCTGTCCCGGTTTTCAACTGGTTCACAAATATAAAATGGTATATACAAACTAGTAAACTAAAACCATATTTTAAAAGTGGTGTGGTATGGTGTGGTATGGTTTATGTACCATGCACACCCCTAATTGTAGGTGCCTCGAGGGGTAGGACAGCTGGCCCAGAGTTTTAACGCTGCTCCGTACCCAAGGCGGGGATCGAACCCCCGACTATTGGTTAAGGGAGGATCAACCCCAACCGTTGAACCCACGCTTTGGGAAATTCATCACATTAGTCCCTAATGTTTTATAAGTACTTGCTAAAAATATGTGAAATCAATCTCGGTAGTCCTTGTAAGAGACTAAATTCATCACATTAGTCCCTAAAATCCTAATGAATTAGATACATAAATACAGTATTCAAAATCATTTTTTTGTCTCTTGTCACCGCAACATATGTAACACATATCCTGTAAATGTTCAACATTTTTTTTTTGAAAGATGTTCAACATTCACATGTGGTGTCACTTTCATAATACTGATTAAATTAGCTTCCCCTAATTTGGCTAATGAAATTTCTACAAGTGCTGCTTATTTCACGCAAATCATAGGAGAACAAAGGCTGTCATTGTTAATAATATATATATGTTGGCATATATATATATATATATATATATATATATATATGCCAAAATCATTGCCCGGTTGGATTGCATTGACATGACAATTGGCAAGGATCCTTCCCACTAATTTAAAAGGTGAAACGTAGCGTAGAAAATGTAAACTAGAAGCAAATAATCAGAAATTTGTATAAGTCAACTGAACTATTAAGACTGATAAAATTAAAACCAGCACATAGATTTCTAAGTTCAAAGTTCCAACATTCTTTTTGGTTTTCACTATGTTGTTTTAGTTCATGGGATAATGCTACCCTCAAACTCTCTAAGACACTCTTTTTAATATACTCTTTTATAGGAAACTAGCACTATATGCAAACACTCTTTTTAATATACTCTTTTATAGAAAATTAGCACTATACACGTGCATATGTACGAATCGTATTGTATTGCTTGTTATTTATTATGTTTACTCGTTATGACTCAAAAGCAAAACAAAAATTGATAAATAGTGAACTTTTTAAAAATTAATGCAGGGGTAGCTTGGTAATTTAAACAACCCTATCTTTTCTTAAATAGACAGTAAAAGACAGTAGAAGATAGTAGAAAATATGTGAAATTTGGACTTTTCATTAAAAAATTGAGAAAGAAAGTGTTTAACATTAAAAATAGGTGAGAAAGGGTAGTAATTAGGGGTGAAAATTTGACCACCATAGAAAGTTTGAGGGTTTTCCATTTGAGAGGGTCTACTACCATTTTTTATTGGTTAAAATTCGCATGGGCTCCACCAAATTTACATGAGACCAACATGATTTAGCGAGACTTATTTGAATTTCAATCGATAAAAAACGTGAATGGTTGTAAGTGCTTTGGCTATATATATATTTGGGGTAAGTAAATCCAATCCAAGGTTCACAAAGAAATCCCAAGTCGTTGCCATGTGTGAATCCGCCACACTATTCTTTGTTTGCCAAATCAGCAAGTCCGTTAAAAATTGGATGACACACATTGACCAAAATTACTGATTTTGAACACAACTGGATCAAAATTGAGCTAAAAGAACACCTAGACCAAAATAGCTTAAAAGAGTATAATAAAGGACCAAAAAGTACAATTAAGATTTTAGTCTATTAATTAATAAAATTTAAACTCTTGCATTACAACTAATTGATGATTTTAATAGAGGCATTCGTAACCCGTAAGACTTAACTCAATTGATAAATACCGCAATTGTCAGGGTATTATGTCTCGTGTTCGAACCCGAACATAGTTGTATGAGTTTTAAATGACGTTTGCTACTCTGTCTCCAGATAAAAAAACCAAAAATGTTATTTGGACCAAAAAAAGTGTACCAAAATACGAATACGTATGGAATATGGAGGGAATATGCATATAATATATTTATTTTTTTGTTTTAATTTAAGTTTAGTGTTATACGTATAATATATTAAATTTAAATAAAAAATAAATGTATTATACGCGTATTCATTCTGTATCTCATACGTATTCGTATTTTTGTACACTTTTTGTCCGGATAACATTCCTAAAAAAAATACAGGCTTTTGTAAATACAATGTCGAAATTGTCAGACTTTCATGTTCCGGGTTCTCGAAATCTCACAGTTGCCTTTTGTAATTTGTAAGGTCTAGCTCAACTGACAAATGTCGAAATTGTCAGACTTTCATGTCCCGAGTTTAGACCCAAAATCTCACAGTTGTGTATGAGTTTCAAGTGACGTTTAAATACAATGAACCAAATCTTTTCGTGACCACACGTAGGTGAGTCAAACTAAATATGTCTCATGTGTGTATAGTCTCCCTTTTACTTGTAAACTGTCACGGTTTGATACTGTATGCCTCGTGTGCACAGTGTCACAATCAAGCATTTTTCCACCCTATAAATAGAGCTTCAATTTTATGCTATATGTCAACTAAAACAAAATCTCTTCTCTTTAATTCCTTCCACCTTTTCACTTTGTACCTCTCTCTATAAATTTTAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00295.20	Glyco_hydro_28	70	382	2.00E-88
PF12708.10	Pectate_lyase_3	41	307	7.00E-11

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH28

Gene Ontology

GO term	Description	Category
GO:0009505	plant-type cell wall	Cellular Component
GO:0009827	plant-type cell wall modification	Biological Process
GO:0016020	membrane	Cellular Component
GO:0016829	lyase activity	Molecular Function
GO:0047911	galacturan 1,4-alpha-galacturonidase activity	Molecular Function

InterPro

InterPro term	Description
IPR011050	Pectin lyase fold/virulence factor
IPR012334	Pectin lyase fold
IPR006626	Parallel beta-helix repeat
IPR000743	Glycoside hydrolase, family 28

trEMBL

trEMBL term	Description
A0A151RYR4	_

SwissProt

SwissProt term	Description
PGLR4_ARATH	Polygalacturonase At1g48100

KEGG

KO	Description	Enzyme
K01184	polygalacturonase	[EC: 3.2.1.15]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G14650	Pectin lyase-like superfamily protein
Medicago sativa L.	MsG0680030406.01.T01	_
Oryza sativa L.	LOC_Os01g44970.1	polygalacturonase, putative, expressed
Cucumis sativus L.	Csa009099	_
Glycyrrhiza uralensis Fisch.	Glyur002219s00033068.1	_
Codonopsis lanceolata	Cl_chr05_06300T	_
Arachis hypogaea L.	AH05G24250.1	Polygalacturonase At1g48100 like

Expression pattern