Gene detail

Detail information of Am07G000400.1 Annotation

Gene ID	Annotation
Am07G000400.1	golgin candidate 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am07G000400.1	mRNA	Chr07	1602313	1614873	+

Sequences

CDS:

>Am07G000400.1
ATGAAAATGGATTTGATGTCTGGTTACAAGGGGGTTGTTGGGCTTGTTTTTGGCAACGAGAATCCTTCAAATGAAGATAGGTATGTTGAGCGCTTGCTTGACCGGATAAACAATGGTAAACTATCGGAGGACAGGAGAAATGCTATTACTGAACTTCAGGCTGTTGTCTCAGAAAATAAAGCTTACCAGTTAGCATTTGGGGCAATGGGCTTTCCTATAATGTTAAGCGTCTTAAAGGAAGACCGTGATGATATTGAAATGGTTCGTGGTGCCCTGGAAACTCTTGTCAGTGCATTGACTCCTATTAACCATGCAAAAGGCTCCAGTAATGAAGTTCAGCCAGATTTGATGAATACTGATTTACTTTCTAGAGAAGCAGAAAGTATCCCTCTTCTTCTAAGTTTGTTGGAAGAGGATGATTTTTATGTTCGATATTACACACTGCAAATATTGACTGCCCTCCTCACTAATTCTCGACAGAGGTTACAGGAAGTTATATTGACCATCCCTCGTGGTATAACTCGGCTGATGGACATGCTTATGGATCGCGAGGTGATTAGGAATGAGGCCTTATTGCTTCTTACTCATCTGACCCGTGAAGCCGAGGAAATTCAAAAGATTGTGGTCTTTGAAGGTGCATTTGAGAAGATTTTCAGTATCATAAGAGAGGAGGGAAATTCAGATGGTGGTGTGGTTGTGCAGGACTGCATTGAATTGTTGAACAATTTGCTTCGTACCAATGCATCCAATCAGGTACTACTAAGAGAAACTATAGGACTTGATTCACTGATATCAATTTTGAAACTGAGAGGAAGTTCTTACAGTTTTAGTCAACAAAAGACAATCAATCTACTCAGTGCGTTAGAAACAATTAAATTGTTACTAAAGGGAGGCTCCGAGACTGATTCGGGGAAAGAAGCGAATAAACAGACAAATAAGACATCACTGGTTCAGAAAAAGGTATTGGACCATTTGTTGATATTAGGTGTTGAAGGCCAATGGGTACCAGTTGCAGTTCGCTGTGCGGCAATGAGATGTATTGGTGATTTGATTGCTGGAGATTCAAAAAATAGCGATCTTCTTGCTAGCAAACGTCTTGGAGAGGAACCACAAGTTGAAGCTTCTCTAAATTCTATACTTCGAATCATTTTGAGGACATCTAGCATACAAGAGTTTATTGCAGCTGATTATGTTTTCAAAAACTTTTGTGAGAAAAATGCTGATGGCCAAACAATGCTAGCATCTACACTTATTCCACAACCATATTCCATAAATCATTCATTCGTTGAGGAGGATGTCAATATGTCTTTTGGAAGCATGCTATTACATGGTCTTACTATGGGTGAAAATGATGGTGATCTTGAGACATGTAGCAGAGCTGCTAGTGTTCTATCTCATATATTGAAGGACAATCCCAAATGCAAGGAAAGGGTCTTGAATATTAAAATTGAGGCACCCATGCAATCTTTAGGAGCTTCAGAGCCACTAATGCATCGAATGGTGAAATATTTGGCCCTTGCTTCTTCAATGAGATCCAAAGATGGAAAGTCCAAAACATCAGAAAATTCATATGTTCAAGCTATTATCTTGAAATTACTGGTTACCTGGCTAGCAGATTGCCCCAGTGCAGTGCTATGCTTCCTAGATGCTCGACCCCACCTTACTTATCTTCTTGAGCTGGTATCAAATTCATCAGAGACCGTGTGCATAAGGGGTTTTGCAGCAGTTGTCTTGGGTGAATGTGTGATCTATAATAAATCGACTGAAAGCGGAAAAGATGCATTTGCCATTGTTGATACAATAACTCAGAAAGTTGGGCTAAGTTCATACTTGTTAAAATTTGAGGAGATGCATAAGAGTTTTGTTTTTGCTAACATGGAGTCACCCTTCATGCATAAATCATTCTCTAGATCTTCAGCAGCTAGCATGGCGGATATTGAAGATGTAGATGAACATGATTTGTCAGAAAGGAAAAATATGGATCATCCGGTTCTCTCTTCAATCCTGGATTCTTACTTTGTGAATTTTGTCAAAAAACTGGAGGCAGATATTAGAGAACAGATTGTGGCGGTTTATAGTCATCCAAAAATCAAGGTAGCAGTAGTGCCAGCAGAAATAGAGCAGAAGAGTGGTGAAAATGATGGTGAGTATATAAAGCGGCTGAAAGCTTTTGTTGAGCAGCAGCACTCTGAGATACAGAATCTGGTTCTTCAAAATTCTACTTTGGCTGAGGACCTGGCTAAGACAGGTAGTAGCAGTAGTTCCCAGTCTGAGCAAAGAGTGGGTGGAGGCGTAGACAGAGTCCAAATAGAGAAACTCCGCAGAGAATTCCAAGAAGCATCTCAAAAGTTGGAGATGCTTAAGGCAGAAAAAGCCGAAGTCGAGTCCGAGGCAATCACATATCAGAATTTAGCTGGAAAAATGGAAGCTGATCTGAGGAGTCTGTCTGATGCCTACAATAGCCTTGAGCAATCTAACCTCCAATTGGAGAATGAGGTAAAAGCACTTAAGAGAGGAGGGTTGTCAACATTCCCAGATGTGGAGGCAATAAAAGCTGAAGCAAGGGAAGAAGCTCTGAAGGAGAGTGAAGGTGAACTGAATGATCTGCTTGTATGTCTTGGACAAGAACAAAGCAAGGTGGATAAACTTAGTGCTAGGTTACTGGAGTTGGGAGAGGATGTTGACACACTACTTGAAGGCATTGGAGATGATGTTGGGGCTGCTGAAGATGTTGAAGATGACGAAGATGCTGAATAA

Protein:

Promoter(3k):

>AM07G000400.1
CATAATCCCCGCCCGAGCACTTTATATAAATACCCTTACTATAATATATATTATATTATAGAGTAAAGGCCCAAATTCGTCCCTGACAAATTTTTCGTGGGACGAATTCATCCCTGACAATTTTTTCGAGACACACTAGTCCCCGACAATTCCAAAATGAGACACGTTAGTCCCCCCATCCATTTAACTGTTACCAGCACAGTAAACATCTCCTACGTGGCATGTTAAGTGTCACGTTGTCACGTTAGATTTAAAAAAGGGACGAATCAGTCCCTAACAATTTAAAAAAGGGACGAATCAGTCCTCTGTTACTATTCATCGTCTTCTACGTCCAAATCCCCAAATCCCTAATCCTAAATTCCTTGACCCTTAATCTCCTTTTGCAATCCACCAAGTTTATTCCTCTTCTGGAAAACAAAAAAACTGAAAAAAAATTGTTTCCAGATTTCGTTTTCATCAAAAGCCCAAATTGTTTCCAGATTTCGTTTTCGTTTTGATTTCATTTTCCACCGTTTCCATTGTTTCTGCGTTTTTGTTCTTGATTCAGTCATGGAGCTTCGTTGTTCTTGAGCTGCATTTTTCCACCGTTTCCTTTCTGCGTTTTTTGTTTCTGTGCTTTCAGTCATGGAGCTTCGTTGTTCTTGATTCAAGAATTAGGGAGGAGGAACCATCATTAAAACCCAACGTAGCTTGTTCAAGGATTAGGGAATCGATGATTTTGTGCAATTTGATTGTTGAATGTTAAAATCAATTCAGCTTTTGATGAAAACGAAGGTCAAGGAATTGTGGATTAGGGATTTGGGGATTTGTAGGTAGAAGTCGATGAATAGTAACAGATGACTGATTCGTCCCTTTTTTAAATCTAACGTGACAACGTGGCACTTAACGTGCCACGTATGAGACGTTTACTGTGCTAGTAACGGTTAAATGGATGGAGGGACTACCGTGTCTCATTTTGGAATTGTCGGAACCAATGTGTCTCGAAAAAATTGTCAGGGACGAATTCGTCCCACGAAAAAATTGTCAGGGAGAATTTTGGGCCTTTACTCTATATTATATATATTTGGATTTTCTGTCTTTTTAAGTATTTATTATTTATTATTTTAATAATTTTTTTTTAATATTCACAAATATACGGTTAGAATTAGAAAAAGGGCAATCTCAAAAAAAAAAAAAAAGAAAAAGGGCTGGATTCATTCTATCGTTCTCGTTCACTTTTGAGAAACCTAACCGCAACCTGCTCTTCTCACGTTCAGTCCGCCACCAGTCCACCACCGTACGCCGCCCCCAAAGCTCTGCTCATTTTCGTTTGCGGAGGTGCTTAGTGTTTTTTAACCTTCTTCTTCTTCGGTATTCTTCATCTTACAAATCGTCGTTTTATTTTCTCCTCCGTTCTTCAGATTTGAGTCAACGTCGTTACAGAGAGAATCCTCCTTGCGCAAGGTAACACTATAATTTCTACCGTACATTGTATTTATTCATTTTTTTGTTCTGCTTCGATGCTTTCTTTCCTTAGCGAAACTTCAAGCGAGTGATTTCTGATGTATGTGTTTATATTTGTATTCAAGCAAAGACCACACTCTGCATCCGTACAATTCCTCCAAGCGTGAGCCGTCGCCGTCGCCTGTTGCCGATCGTGCCGCCGCCTCAGAACGCTGCTGTTCTTCTCTCGCTCTTGTGTCGTATATTGCATCTCCGTTTTCCTGATCCAACTCTGCGTCTAAGGTAATCAATAAGAACCCCGTTTCATGCTTAACTTTGTGTTTGACTCAAAGAGATTGTGAGTGGTTTCTGTTGCTGAATAGAATATAAATGATGAATGAAATAGCTATTTGTGACTTCTGAGTCGGTTCTGTTACTGCTATGTGTAACTGTGTGTTGATTTTAAATGTGATTACAAAATAGCCAGTGGTTTCTGAACCCTGTATGATGTTGTTATCCTGCCATCTAGGAATTGTTATCCCCTATGAATGATGCTGTATGATGCAGATTGTGTTGATCCCCTATGTATCTAGGATGCGTTTATAAATAGATCCAGATTGTGTTGATCCCCTATGATGCGTTTATGTTCACAATGTTGATGTATTGGACTGTATTGTATGATGCTGTTACCCTTGCAATGTTGATGTTAAGATGATGATTAATTTTATCTTGAAATTATGGTTAGTATTGTCTCTTTATTATTGTAATTTTACATTTTTTTGGCCTATTTTTGTAGTTTTATGGGGTCCCCGTGGGGATCCGCGGGGGCGGGGATGGGGGAGTAAAACTCCCCACGGCAGGGATCGGGGACGGGGGAACATTTGGGTGGCGGGGACGGGGAGTGGGGGAGTACACCCCGCCCCGCCCCGCCCCGCCCCACCCCATTGCCATTCCTATGCATGACAAGTAAACTCTTATGATATATAGTTTTTAAACTTCTATCGTAAATAGCATATTTTTTAAACTTTAACTGGTGTACACATTCGTTCTAAAAAGTCAAACCACTTTTATGACATGTCATTTCGTAATTGGCTAACGTCGTAAAAAAGCATGTACTACGTCAGTGTGTATAAATTAAATCCTATTTTTTTTAGAAACAATTTTATTAATTTTTTGTAAGGATATTTTGCAGTAGTTTTTATATCGAGGGGTGACCCTAAGGGGGGTACACTTGGTATTAGCCTTGGGAGATCCTCACTCCATATTGGAGCCCATGGGCCTACTTCACAAAGATGATGATGGCCCAATTTGAAATTTGAAATCTAAAACATTTGTCAATTTGACCAAAAAAAAAACCATTTGTCAAAACTTTACTTGAGTGTCTGATTCGAAAGCTTTACACGAGATTGCATTTTTCGTTGACAAACCAGCCATCTGGTACCATTTCTTCTATTAATCTCTCTTTTTTAGGGTTCTAATTATTCCATAATCCTCCATATATTTCGATTTTGACAATTGTGAATTGAAATCAGATTTGATTCGTTTTCTTATCTTTTCTTTTCAAGGAGTCCGTGAGCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04871.16	Uso1_p115_C	790	914	9.50E-30
PF04869.17	Uso1_p115_head	376	688	4.30E-26

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0048211	Golgi vesicle docking	Biological Process
GO:0045056	transcytosis	Biological Process
GO:0005783	endoplasmic reticulum	Cellular Component
GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	Biological Process
GO:0009791	post-embryonic development	Biological Process

InterPro

InterPro term	Description
IPR006953	Vesicle tethering protein Uso1/P115-like , head domain
IPR006955	Uso1/p115-like vesicle tethering protein, C-terminal
IPR016024	Armadillo-type fold
IPR011989	Armadillo-like helical

trEMBL

trEMBL term	Description
A0A1S2XGY2	_

SwissProt

SwissProt term	Description
GOGC6_ARATH	Golgin candidate 6

KEGG

KO	Description	Enzyme
K20361	intracellular protein transport protein USO1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G27530	golgin candidate 6
Medicago sativa L.	MsG0680030321.01.T01	_
Oryza sativa L.	LOC_Os12g35360.1	vesicle tethering family protein, putative, expressed
Cucumis sativus L.	Csa011227	_
Glycyrrhiza uralensis Fisch.	Glyur000130s00006901.1	_
Codonopsis lanceolata	Cl_chr01_12030T	_
Arachis hypogaea L.	AH15G31660.1	Golgin candidate 6 like

Expression pattern