Gene detail

Detail information of Am06G026260.1 Annotation

Gene ID	Annotation
Am06G026260.1	AAA-type ATPase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G026260.1	mRNA	Chr06	146546458	146552970	+

Sequences

CDS:

>Am06G026260.1
ATGACGGATCGAAGCAAGGTTCACCTTAGAAAGGAGCTCACACAAATACGGAAGGCCGCTCGCGTGTTGAGGGATCCCGGCACCACATCTTCCTGGAAGAATAACAACACCAAGTTCTCCTCCTCCTCCTCAAGATCTGCATGGAACGCTAATTCACTTCCCCCTCGCCCCAATGCCATTGACAACGACAAGGAGAAGAAGATCTTTTTGTACAACTGGAAAAATTACAAATCGGTGGACTTGAATCAGCCGCACCAAGAAGAAGAAGAAGAAGACGAGGATGGATCTTCCTCTCTCCTTGGAAGTTTCGAGGGAAGCTACAGCAAGAGTGACGCTGGGACTCGCCCTTCCATTTTCCCTCGTCCTTCACCGGCGGCAGCAAAGAAAAAGAGTAAGAAAAGTAGGAGGAACCCCCCGCATTTTGATTTCTCAACCAAGACTAGAAAACTCCCTTCCAACTCTAAGCCATTGTTACACCGCCATTCTTCCGTGCCTTTCTTTACCAGGGGTGATGATCATGATGATGATTCGGCTGAGCACTCTGATGATACACAACATTACTGTAACTCTGAGGATGTAAGACCTGTTTCGGGAGCATCTCCTCTGCTTATGAAACTAAACTCCAAGTTGTTGAGAAGAAGAAGAAGAAGCCCCAAAGACGACTCTTCTTATTCTTACAGTACGCCTGCATTGTCTACCAGTTCTTTCAACAGGTACGCTCCTCGTTATCCCAGCACCGTTGGATCCTGGGATGCCACCACAACCTCCCTCAATGATAATAATGATGACATTGATGATCGTTTGGATTTGCCTGCTCGCCAAGGATGTGGAATTCCTTGTTATTGGTCAAAGAGGACGCAGAAGCATAGAGGGAGGATGTGTGGGAGTTGTTGTTCTCCTTCGCTCTCCGATACTTTGAGGAGAAAAGGAAGCAGCATATTCTGTGGTAGTCAGTCTATCTATTCAAGACGCCGCCGTAGATCCTCTTCTGTTTCCCGTAACCGGAGGTTCCCTCTTAGAGGAAGAGGAGGGTCTTCTTTGGGTACTGGTGGTATGAGTGATGATGATGACGATGCACTTTCTACAAATTTTGGGGAGCTTGATCTTGAGGGTTTGAGCAGATTGGATGGAAGAAGGTGGTCATCCAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTGCCTCTCAACGATCAAGGATCGCCCGCGAGTGCTACCAGTTTCACATCTAAGTATAAGCCTTTGTTCTTTGGTGAACTGATTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCCAGAGGCAGAATTGCTCCTGTCTATCTTTTTCAAGGTCCTCGTGGGACTGGTAAAACATCAACCGCCAGGATATTTGCTGCTGCATTGAATTGTGTGGCTTCTGATGAGAGTAAGCCTTGTGGATATTGCGGGGAATGTGCCGATTTCATTTCTGGCAAGAGCAGTGATCTTGTGGAAGTTGATGGAACTAATAAGAAAGGGATTGATAAAGCTAGATATCTGCTCAAAAGATTGTCGTCGATTGGGTCTTCAACGGCTTCCTCGAGATATACGATTTTAGTTATTGATGAGTGTCATCTGCTACCCTCCAAGACATGGCTTGGATTGCTCAAGTTTTTGGAACAACCGCCTCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTGCCACGAACAATTCAGTCCCGATGCCAGAAGTACCTTTTCAATAAAATTAAAGATGGGGATATTGTCACCAGGCTAAGGAGAATATCTGTTCAGGAGAACCTTGACGTTGAAACAGATGCACTGGACCTCATTGCAATGAATGCAGATGGTTCGCTTCGAGATGCAGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGGGTTGTTTCGGATGAAAAATTGTTGGAGCTTTTGGAATTAGCAATGTCATCAGAGACTGCAGAGACGGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAGCTAGCTGGTCTTATTATGGATATCATTGCTGGATCATATACAGTCATTGATGACAAACCCGATGGTTCATTCTTTGGTGGACGGAGTTTGAATGAATCGGAGTTGGAGAGATTAAAGAATGCTTTGAAGCTTCTCTCAGAAGCGGAGAAACAGTTAAGGACATCCAGTGAACGCTCAACATGGTTCACAGCAACTCTGTTACAGCTTGGCTCCATAACTTCTCCAGATCTTACGCAGTCAGGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGAGGATCCATCAAGTGCTTCGAGAGACGTTACCTCTTTCAAGCACAGGTCAGACCTCCATTATATGCCTCAAAAGTCAACATCCCCTGTTTCCCAGCAAAAAGGATTAAATAGCAGTTCCAGCAATCAAAAGGATATGTCCTCCAAGATTGACGGTCTCAGCTTGAAATCAAGGCCGTCAAATAGCCCGGTCATAAATGATGGTTCCACAGTTGTCTCATCCGATGATCTTCTGGTCGCGAATACAATGTTTAGATGCATAGATTCAGGGAAACTATATGACATCTGGGGATCTTGCATCGAGGGGTGCCACTCTAAGACATTAAGGCAGCTGCTACATGATCATGGAAAGCTTGTGTCCATATGTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGATGGAGATATTAAACTTAGGGTTGAGAGGTTTCAAAGAAGCATTACAAACTCGATGGAAATGGTTCTTAGACGCAATGTGGAGGTCAGAATTATCCACTTGCCAGATGGTGAGGGTGATAATCAGGTTAATCTGCCAGGTAAAAAGCAAGCAGCATCAGCTGGGGCAATTGAGGAGGAACAAAGACGAGGTCATATGAAAGGAGCCGAGTCTTATTCAAGTTTGCCTCCTTTACTAGATGGGAACCTTCAATCTGCCATGGGTTCATCAGATATTCTGGCTGAAGGAAATGGTGTGAGGGAGAGGAAATCAGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTACAGGCTGTAGAAAAAGGTTCCCCTGGATCGTTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAGGATGGCGTTTATTGTGTAGACCCAACGGAGTCACTGGATTCAACAAGATTTTCCTCTCGCCAGCATAGGGAAGATGACCCAAATAGTGATCTCAAAGTTTTGAGCATTAGAAATGGAAGGGTCCTCCAAAAAGATCAGATTGGGAAAAGGGGAGATCGTTATCCCATGTCCCCAAGTTTATTGCATGACAGCAGTTTAGCAACAATATCTGGAAAAGATAATCTGGGTTATGAATCCGGCTCGGGAGCTGGAGGCTGTGGGTTTTTATGTTGGAATAACTCCAAGACTAGAAGGGTAAAAGGCACCCCAGTTGGAGGGCGTAAAGTTGGGGGTTTTACATTGTTTGGTGAGTGTGGTAAGCCGAAGAAAAAGGAGTATAAAAGATAA

Protein:

>Am06G026260.1
MTDRSKVHLRKELTQIRKAARVLRDPGTTSSWKNNNTKFSSSSSRSAWNANSLPPRPNAIDNDKEKKIFLYNWKNYKSVDLNQPHQEEEEEDEDGSSSLLGSFEGSYSKSDAGTRPSIFPRPSPAAAKKKSKKSRRNPPHFDFSTKTRKLPSNSKPLLHRHSSVPFFTRGDDHDDDSAEHSDDTQHYCNSEDVRPVSGASPLLMKLNSKLLRRRRRSPKDDSSYSYSTPALSTSSFNRYAPRYPSTVGSWDATTTSLNDNNDDIDDRLDLPARQGCGIPCYWSKRTQKHRGRMCGSCCSPSLSDTLRRKGSSIFCGSQSIYSRRRRRSSSVSRNRRFPLRGRGGSSLGTGGMSDDDDDALSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNDQGSPASATSFTSKYKPLFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESKPCGYCGECADFISGKSSDLVEVDGTNKKGIDKARYLLKRLSSIGSSTASSRYTILVIDECHLLPSKTWLGLLKFLEQPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRRISVQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSETAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVIDDKPDGSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSITSPDLTQSGSSRRQSCKTTEEDPSSASRDVTSFKHRSDLHYMPQKSTSPVSQQKGLNSSSSNQKDMSSKIDGLSLKSRPSNSPVINDGSTVVSSDDLLVANTMFRCIDSGKLYDIWGSCIEGCHSKTLRQLLHDHGKLVSICEVQGVLVAYVAFGDGDIKLRVERFQRSITNSMEMVLRRNVEVRIIHLPDGEGDNQVNLPGKKQAASAGAIEEEQRRGHMKGAESYSSLPPLLDGNLQSAMGSSDILAEGNGVRERKSDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYCVDPTESLDSTRFSSRQHREDDPNSDLKVLSIRNGRVLQKDQIGKRGDRYPMSPSLLHDSSLATISGKDNLGYESGSGAGGCGFLCWNNSKTRRVKGTPVGGRKVGGFTLFGECGKPKKKEYKR*

Promoter(3k):

>AM06G026260.1
TGGTAAGCTAGGGCAATGAATATTGAGTAGTGATTAATTACAATAACTTTAGGGTTTTTTCTTTTGTACCCGCCTCCTTCTCCCCTATACCCCCATAATAACCCAAATGGACCAAAATACCCCTAAAAATAGTTAAAAAACGTAAATGGGGCATTTCCGAAAGGTTTTTTTTTTCGGAAATACCCCAAAATAGGTAAATGCGGAAGAGATTTTTTCTGGGATTTCCAGAAACACCTCAAAACGAGGTATTTCCGGAAGTGTTTCCAGAAATCCCAGAAAAAATCTTTTCGGATTTACCCCTATTTCCGGATTTTTTTTATTTAAATTTCGTTTTAATTTTTTTTTGCTTTTTCAGTGGCAACCAGAACAGGAATGATAGAGTGAGGCGAGTCTTCCGGGGCAGCACCAGGAGATGCAGATCAGTCTCCTCCTGCTCCTAGCACGAGGACGAGGTTTCGGTTTGTGAGGCAGGCTGGTCACGCTTCTGAGCGTCAGAGGCGTGTCCGAGAGCGAGAGAACATAGGCGGGGCTGATCCGGTGCAGCAGGAGCTGCAGTATCATGAGCCTGCTCAGCAGGACCACTTTCAGCAGTATGAGGAGGATGAGGCTGCTCAACAGGACGCTCAGCCTGCTCAGCAAGTTTTGTTGGACCGGTTGCATGTGCACTGCGTCTCCAAGCTACAATTGGTGCTTTTGACATTTGACCCTTAGTTGTATATTTTGTATTTTGTATATTTTGTATTTTGTATATCGTGATCGTATTGTATATTTTGTATTTGTTCTCGTATTTTGTATATTTTGACGTATTTGTTCTCTCGTATTGTATTGTTATCGTTTATCGTGATCGTAGTTTAGTGAGTTTCGTTATATATCGTTATTTATGGTAATAATTTAAATTTTAAAAAAAAATTAAAATACTTTCCGGACATAGATCTAAATTCGGAATGCAAAATTTTAAGATTTCCGGAAATACCTTAAAAAGAGATATTTTCGGAAGCCATTTTGCCTTTCAAAAATACCTCTTTTTGAGGTGTTTCCAGAAATCTTAAAACTTTGCATTCCGAATTTAGACCTATTTCCAGAAATTTTAAAAAAACCATTTTTTTTAAAAAATAAGGAGTATTTTAGGGATTTTTGGTAAAATGGGGGTATAGGGGAGAAGGAGGGGGTACAAAATAAAAAACCCATAACTTTATTTCTCCTTTTATCAAATATTAAGGTAGAAATAAAAGGAAAATAACCGGAGACACGACTAATATCTCGTTTCCTTCCCTTTTTGGTTACAAAAGCATTATTCTTTATGGATTGATGGTAGTTAGATAGTAGTAAAATGGAGATGATGGAGGGATAATTGAATTGATAGCGTAAATCAGTAAGATGGACAAAAAGTCAAAAAAGATGAGAGAAAAAAGACAGAAATGAATGAAAGGGTAAAAAGGCAAAAAACAAGATTAAAAAGAAAGAGAAGAAGAATTGTAAGAATTGGGAGTGTGAGAGTGACAGCGGTAGGGGGTAGGGGGCGGGGGTTGGGGGGGGGGGGGGGGGGGGGTGCGGGGTGCAGGGTGGGGTGGTATTAATCCGAAAAGGCAGTTTTTTTTGGTACCCATTGTACCCCCTAAATTGATCAAACGGATCAAAATACCCCTAAAACAATGTTAAAAAACGAATTCATTCATCATTTCATCATATTTCTGGAAAAAGTAAGTTTTTTCCCCTAAACTTCTCGGAAATAGACGTATATCCGGAAAGCTTTTCGGAAATACCATTCTTTGAGGTATTTCCGGAATGTTTTTTTTTGAAATTTCGTTTTAATTAATTTTTTTTTGCTTTTTCAGTGGCAACCAGAACAGGAAACATAGAGCGAGGCGAGCATTCAAGAGCAGGACGAGGAGATGAGCAGAGTCCTTCTGGCAGTAGGAGCAGGTTCAGATTGAGGACTAGACAGGTTGGACACGCGTCTGAGCGTCAGAGGCGTGTTCGAGAGCGAGAGCAGGAGCGGGATCATTATTATCACGAGCCTGCTGAGCCAGACGCCATGCATGTAGATGACCAGGCTGAGGCTGAGGTTGCTCAGCATGATGATGAGGCTGCTGAGCAGGTTTTATTACACCGGTTGCATGTCAACTGCGTCCACAGACTACTACAGCCGTGACAGGTAATACTTTTAATAATTTGTTTATTTTTTAACAATTAATTACTTTTAATAATTTATTAATTACTTTTATTTTTTTACAGGACCGGGGTAAGATTAAAGTTGCTTCTCACGGGGGAAGATACTAAAGATGGGACCTCAGCAGCACCACCCACATATAGCAGGATGGTTGTAGCAGACCCATATGTTTGAGCTGGACATCACACCTCTCGGCAACATCAACCACGAGCTCATATCAGCTTTTGTGGAGATGTGGCATTCTGAGACCAACTCATTCCACATGCCCTAAGGGGAGATGGCAGAAATATGTGTTTTCCGTAATTATTTCCCGTAATTTTTTTTAATTTAAAAAAAATATTTTTTTAAAATTTCTGAAAGGCAAAAATATGTGTTTTCCAAAAATATGTGTATTTCCAGAAATTTTAAAAAATATATTTTTTTTAACGAAAAAATAGGGGGTATGGGGTACGAGGTCGAGGGCCTAAAAAAACTGCCATCCGAAAAAGGTTGATGAACGTCGTTGGTAGTTTCGAAGATCATAGAAAGGAAGCAAACAAAGGAAAACTCACACTAACAAACAGACACTCACACACACTTTGAATTCGCTTCAACATGAAGCGCCAAATTAAAAAAGGAAAACCCTAGCCAATTATTATTATTATTATTGAGTAAAGAAAAAAATTGAATATAAAAAGAAAACAAAGGCAGCAGAAGAAGAAGGAAGAGAGAGAGAGAGGGTCAACTAAAATAGACACTGAGTTGATTTGTTTTTGTTCACACAGGGGAGTGAGAGTGAGATCCGTTGTTTTCATTGATTGATTGAATGAAGCAGTGATAGAGAGAAGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13177.9	DNA_pol3_delta2	421	582	5.30E-34
PF00004.32	AAA	443	578	2.80E-09
PF12169.11	DNA_pol3_gamma3	636	700	1.10E-07

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0016887	ATP hydrolysis activity	Molecular Function
GO:0009536	plastid	Cellular Component
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR045085	DNA polymerase III, subunit gamma/tau, helical lid domain
IPR012763	DNA polymerase III, subunit gamma/ tau, N-terminal
IPR022754	DNA polymerase III, gamma subunit, domain III
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A8B8JDX4	_

SwissProt

SwissProt term	Description
STI_ARATH	Protein STICHEL

KEGG

KO	Description	Enzyme
K02343	DNA polymerase III subunit gamma/tau	[EC: 2.7.7.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G02480	AAA-type ATPase family protein
Medicago sativa L.	MsG0880047777.01.T01	_
Oryza sativa L.	LOC_Os12g10670.1	AAA-type ATPase family protein, putative, expressed
Cucumis sativus L.	Csa000433	_
Glycyrrhiza uralensis Fisch.	Glyur000030s00002329.1	_
Codonopsis lanceolata	Cl_chr05_07350T	_
Arachis hypogaea L.	AH10G24010.1	Protein STICHEL like

Expression pattern