Gene detail

Detail information of Am06G025860.1 Annotation

Gene ID	Annotation
Am06G025860.1	ubiquitin-specific protease 13

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G025860.1	mRNA	Chr06	145260508	145274648	-

Sequences

CDS:

>Am06G025860.1
ATGATTGGGACCAGATGGACAGTTGAAGGATTTGAAGATAGTTCGAAAAAACGCTATTCTGAAATTTTCACAGTTGGAGGTTACCGTTGGCGGATTCTTCTCTATCCAAGGGGCTATAAGTATAAAAGTGATGATCTATCACTGTATGTTGAAGTTGCGGAAATCGAAACCTTGCCTAAAGGTTGGACTATATCAGCAACTGTGAGTTTCACCGTCGTTCATCAGTGTCGCCGGCGGTCGAAACATGGCACCGTTTTTGATGGAAGTCATATTCGTTGGGGTTTCACTGAGTATATGCCTCTTAATAAATTGAATCAGAGTGGGTATCTTGTGAATGATAGATGCATAATTGAGGCTACAGTGGTACCGGACGGAGACTCTGATAATTGGGCACATGATTCAAAAAAGGAAAGTAGTTACACGGGACTAAAAAATGAAAGAGCAACTGGTTGCATGAATTCTCTTCTTCAGACACTGTATCACATTCCTTATTTTAGAAAGGCCGTGTACCATATGCCGACGACTGAAAATGATATGCCATCAGGAAGCATCCCTCTGGCACTACAGGCTTTGTTTTACAAGTTGCAGTACAGTGACACAAGTGTATCAACGGAAGAGTTAACCAAGTCTTTTGGATGGGATTCAAATGATTCATCCATATCGCATAATGCCCATGAATTTAATAGGCTTTGTGAAAAACTAGAAGACAAAATGAAGGGAACTGTTGTTGAAGGAACTGTACAAAAGTTGTTTGAAGGCCATTATATGAACTATATTGAATCCACAGGCATGGATTATCCATCAACAATCAAACAATCATTTTATGATCTGTGGCTTGATGTCAAAGGCTGTACAGATGTGTATACCTCTTTTGATAAGTATGTGGAAGTGGAAGAGCTTGAGGTAAAACATATAACCATGTATTTTAGCTTTTGGAAGGCTGTATTGTTCATTGATTTTCCACCCGTTCTTCGGCTTCAGTTAAAACGGTGGGAGCATGATTATGATCGCCTCACTATGGTAAAGATCAATGACCGCTACGAGTTCCCCTTGCAACTAGATCTTGATAGGGATGATGGCAAGTATCTATCTCCTGATGCAGATAGAAGTATTCGCAACCTTTATACACTTCACAGTGTTGTGGTTCATAGTGGTGGAGTTCACGATGGACGCTACTATGCTTATATACGGCCAGCGCTTTCAGATCAGTGGTTTAAATTCAGTGATGACCGAGTAACAAAAGAAGACATAAACTGGGCTTTAGAAGAGCTATATGGCGGTGATTGTGAAGTAGAGCCATCTCAAACAAATCCTAACATCACTCATCATAAATTTACAAAGTGCTCAAATGCATATATGCTTGTCTATATACGTGAAAGTGACAAGGATAAGATAATTTGTAATGTGGATGAGAAGGACATTGCCAAACACCTACAAATGAGATTAAAGAAAGAGCAAGAGGAAAACGCTAAGGCTTACTTTGACATCAAGGTTGCTCGTGATGTTGATCTGTTTGAGCAGATTGGAAAGGATATATTCTTTGATCTTGTGGATCATGATAAAGTGCGTAGTTTTCACGTTCACGAACGGATGCCCTTTGTCCTTTTCAAGGAAGAAGTTGAAAAAGAGTTTGGTATATCTGTCCAGTACCAACGTTTTTGGTTATGGAGACTGCGTGGGAACCATACATATCGGCCGATTAGACCACTGAGTGCTGATGAAGAAACACAGACTGTTGGTGCGTTAAGAAATGCTTTAAATAGATACACTAAAGATGTTGAAATGAAATTATTTGTGGAAACACAACTGGGGAAGGATATGAAAGGCCAGTTATTGCTATTCTTTAAACTCTATGAACCTTCAATTGAGAAGCTTCAGTATGTTGGGAGGATTTTTGTGATAGGTAACAAAAAGCCAGGAGACATATTGATAGAACTAAATGAACTGGCTGGATTTTCTCCTGACGAAGAAATTGAGCTTTTTGAGGAAATAATTTTTTTTCCGGAAATCACATGCATTCCAATTGATAAGAAGCTCACTTTTCGTGAAAGTCGGCTACAGGACGGTGATATCATTTGCTTCCAGAAGTCCCTTAAAGTTGGAGATGGACAGCAATATCGCTATCCAGAGATTCGCTCTTTCTTTGAAGATGTACCAAACCGTCGGGTTGTTCGCTTTAGGATTTTGAAATACTCAAAGAAGAAGGATAAATGTATTAAATTCCCTCTTGACCGGCGAGTTTTTACCAAACATGTGATTCTTTGGTCAATGCTTCACACGTATGATGACGTTGTTGAGAGAGTCTCTCAACATCTCGGTTTAAATGATCCTTCGGAAATCCAACTCACATCTCATTGCTGCTGGACCCAACTACCTGCAGCTCAACATATCAAGTACCGAGGAGTTGAACATTTATCGGACATGTTATCGGTTCACATCCACTGTGATCAGACTTCTGATATTCTATACTATAGAGTATTGGATATCCCTCTGCGAGAATGGGAGTTGATTGATGAAATGGCAGACTTGGAGATAAAAAGAGCACGTCCTCTTTTGACAAGAAGAAAGACTCATATTATCAAAAAGAGAAGATATGAACCAGTCACGGATAGGGGAGTGCTGAATAATCATTTACACAACATGCTAAAAATTGTATTTTGCTTTAATCATATTATTACATCTATTCCAGTTATGGTCTTTTTCTGCTACAAAGATTATATTTGGTTGCGAGAAGCAAGGGAATTGAATCAGAAGGATAAAGGCCCCGACAGCAGGACGCATCACCTGGTGATGCCCGAGACGAAGACTCCCCTCGATACCTGTTTGACACTGAAAAAACAAATTTTTAGAAAAATAAAAACCAAATCGGATCTACCTATATCCGATGGGAAATCGGATATAGAGTCCAATCTTCAATGGCCAAGATCATTTCACCAGATCGAACGGCCCAAATCGATACATGCATTTGCCTCAATTTCTGAGAGGAAGGAGAAGATTGCTTGA

Protein:

>Am06G025860.1
MIGTRWTVEGFEDSSKKRYSEIFTVGGYRWRILLYPRGYKYKSDDLSLYVEVAEIETLPKGWTISATVSFTVVHQCRRRSKHGTVFDGSHIRWGFTEYMPLNKLNQSGYLVNDRCIIEATVVPDGDSDNWAHDSKKESSYTGLKNERATGCMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQALFYKLQYSDTSVSTEELTKSFGWDSNDSSISHNAHEFNRLCEKLEDKMKGTVVEGTVQKLFEGHYMNYIESTGMDYPSTIKQSFYDLWLDVKGCTDVYTSFDKYVEVEELEVKHITMYFSFWKAVLFIDFPPVLRLQLKRWEHDYDRLTMVKINDRYEFPLQLDLDRDDGKYLSPDADRSIRNLYTLHSVVVHSGGVHDGRYYAYIRPALSDQWFKFSDDRVTKEDINWALEELYGGDCEVEPSQTNPNITHHKFTKCSNAYMLVYIRESDKDKIICNVDEKDIAKHLQMRLKKEQEENAKAYFDIKVARDVDLFEQIGKDIFFDLVDHDKVRSFHVHERMPFVLFKEEVEKEFGISVQYQRFWLWRLRGNHTYRPIRPLSADEETQTVGALRNALNRYTKDVEMKLFVETQLGKDMKGQLLLFFKLYEPSIEKLQYVGRIFVIGNKKPGDILIELNELAGFSPDEEIELFEEIIFFPEITCIPIDKKLTFRESRLQDGDIICFQKSLKVGDGQQYRYPEIRSFFEDVPNRRVVRFRILKYSKKKDKCIKFPLDRRVFTKHVILWSMLHTYDDVVERVSQHLGLNDPSEIQLTSHCCWTQLPAAQHIKYRGVEHLSDMLSVHIHCDQTSDILYYRVLDIPLREWELIDEMADLEIKRARPLLTRRKTHIIKKRRYEPVTDRGVLNNHLHNMLKIVFCFNHIITSIPVMVFFCYKDYIWLREARELNQKDKGPDSRTHHLVMPETKTPLDTCLTLKKQIFRKIKTKSDLPISDGKSDIESNLQWPRSFHQIERPKSIHAFASISERKEKIA*

Promoter(3k):

>AM06G025860.1
TGTTCTTTAGCTTTGGAATATAGTACACATCTGTCACAACCAGAATCATTCCTTTCACCTTCAACTTACCTGTACCTTTGGCTTCCACAGTGATTCTTGAGCCATCTCCAAGTTTTACAGTCTCTCTAAATGTGGTATCAAGCTTTGAAAACCACTCCTTTTCACCACACATGTGGTTGCTGCAGCCCGAATCCAAATACCAAATTCTTTCTATTCTTTCTATGGCAGCCTCAATTTCAGCCATGAGTAGTACCTCCCCATCTTCATCAGCTTCTGCATATTGAGCTTTTTCTTCACCGTTTGGACATTCATATTGGAAATGTCCAAGTTTCTTGCATCTATAGCACTCCAAGTTGTCTTTATAGGATTGTCTGCCTCTACCTCTTCCTCCTCTTGTAGAAGCACGGCCTCTTCCTCTTGCAGACCCTCTGCCATTGCTGCTCACTTTCAGAACTTGTTCTTCTTCTCTCTGTGGAAACATTCTTTGTTCATGAACTAGGAGGCTTCCTTGAAGTTCATCCACAGTCATCTTCGTCACATCATTCCCTTCGTCAATTGCAGCCACAACATAGTTGAATTTCTCAGGCATTGATCTCATCACCTTTTCAACTACTTTTGTTTGATCAATCCTTTCACCATAAATTTTCATCTTGTTGACAATCGCAAGGGTTCTTCCAAAGTACTCTGACACAGTTTCTTCATCTTTCATGCCAAGAAGCTCAAATTCCCTTTTAGCTGCACGTAGTTGAGATCGTTTCACCTTCGTCGTTCCTTGAAACTTTTGTTTCATGGAATCCCAAATTGCCTTCGATGATTCTTTGTCAAGAATTGTTTCAATGATTTCTCGATCGATAGACTGAAATAGGTAGTTTCTTGCCTTTAAATCTTTCAACTTTCCCTCTTCGTGCGCTTTTGTATTCTCCGCCGTTGCCGGTGTTGTCAATCTAGGGATTCCTCCATCGACGATGCTCCAATACTCCTTGGAGCGAAGGAGATTTTCCATGAGCATTGCCCAGTGGTCGTAATGACCATCGAATTTGGGAATCGATGCATGCATATAGTTTCCATTGTTCTCTTTTTCGGCCATTGGAGAGAACTCGAATCTTGAGTTCTTGACAGGTCCCTTTCTTTCAAGCTCTAGATACCAAATGTAGTTTCTAACAGAAATGATTTTGGGAAAATCTCAAATGGCTTTCATTGATTTTGCACTATTAATAGGTGCTGAGTTTTTACAAGAGAGAGCTTTAGCTGTTACAATGCCATCAAACTAACTAAAGCAGTTACAACAGAAATTAAAACTAACTGTAAAACAGACATTCACTAATACAGCAATTAACACCTATTAATTTGGCTAATTACACTTAACAAAAACCCTTTCTAGAGTTCGATCCCTCCTTCAAAGCTTCAAGTGTGCTATCCCAAACTCACATGCAAGCTCCAAACCTACTTCTATGACTCCTAGAACTCACATGCAAGAAGGTTGGAATCATCACATTGTGGTTTTTCAGAATTTGTGTTTCAAACCCTTCAAAGAACTCGAAGATGGGGATAGAAATGAGGATGAAATTGTGTAGTTGAGGATGAATAATGAATGTTAGGCTTCAATGTGGTTGATTTTGAGCTAATGGCGAATGGTGGTTCCTCTCCTCTTCTCCTCTCCCTCACTCTGGAAGCTCTCCTTCTCCTTGTTCTCTATTTCTCAATCTTTTTAAAAATTGAAACGCGTTTTGTGTGTGGGAGTGAGGGTGTTTCTACCCTTTTATAGCAAGATTTAATGAAGAGCAATATGGGAAATTTGTTTCAGCCGGAGGTAAAGAGGGAATAAAAGAGATTTGGTTTAATGAGAGTGGGTTCAAAACAAAAAGGAATTCCCAATAATACCCCTCCTATAACTTACTAACACTCAAGCTTAATTACTTCGCTAGTTTTACCCATAAAACTTCTAATAAATCCCAGAATTGCTAATTATTCACAAACACAAAATCATATTCACAAATCACAAACAACCATGTGTAATTAGATACATCAAAATAAATCAATAATCAATCAAATGCGTTACACCGGTGTTTAGGAAAAGAGACTCTAACTAATTCAAAATTCGACCGAGAGGTAAATAAAGTCTGCCTCGAAGTTATTCTATAACTCGGATCGAACCTGGGTAGCCGAGTCCACCCCTTTAGCTAAAATTCGTTGACCACTCACATCTTTTATATATAAAAGTAAGATACAATGTTTGGTGTTTAGGCGGAAAAAAGATCCGCCTAAACTGAGGATAATTTTGTAATTATAACTAAACTAAGGCTATTAAATAGGAAAGTATTGGAAAATGATAAGATTAATTAAAATTCAATCCGCTAATTTTATTAGACACTTTTAATTCAATCTGCTGAATTTACCAAACACAATAAATTCAATCCGCTAGTTTATCTCACTACTATCAACTCAACCGCTATAAACTATTTTTTTTGTTCAGACCATTGCTACTACCTATACCCACAAAGTGTCTCAACGCTTTCAACGAAAGACTAATATCCGCTCGTGCTTAGAACCAAATTTCGCACTAGCCAACACCAACTTTATCCACCGACCGAATTAAACCGTAGAGCAGACGCTATAAACTAACGTATTAACTAATTTATTAACTAACTAATTGAAATTGACGATAGTATAATTGATATAATTTTTCCCGCTCGAAACAAAACATCCCGATTCCGTGTGCACAGAGCGAAAAAACTACCCGAATTCAGCTACGGGAAGTCGAGGTAACTCTCTTCACGCTATCTTCTCTTCGCTCTCTCCTCTTGTCTCTCTACGTTCCTCATTCTTTGTTTCATTTCCATTAATCTAGAATCAACTCCATTTCCATGGATCGAACAACCGATCCATCATCGTAACGATTTTTGTGTTTTTCTTTACTATTGAGACTTGTTTATTGTTATTTTTAGGGTTTTTGCAAGCCTATGCGTTTTCTTTTGTGATTGATTGCAGCAAGACGATACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF12436.11	USP7_ICP0_bdg	551	809	4.60E-52
PF00443.32	UCH	141	456	2.60E-33
PF00917.29	MATH	14	121	5.00E-15

Gene family

Gene family	Subfamily
Ubiquitin Family	USP

Gene Ontology

GO term	Description	Category
GO:0031647	regulation of protein stability	Biological Process
GO:0006508	proteolysis	Biological Process
GO:0003690	double-stranded DNA binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0006265	DNA topological change	Biological Process

InterPro

InterPro term	Description
IPR028889	Ubiquitin specific protease domain
IPR024729	Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
IPR008974	TRAF-like
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765	Papain-like cysteine peptidase superfamily
IPR002083	MATH/TRAF domain

trEMBL

trEMBL term	Description
A0A072VIQ6	_

SwissProt

SwissProt term	Description
UBP13_ARATH	Ubiquitin C-terminal hydrolase 13

KEGG

KO	Description	Enzyme
K11838	ubiquitin carboxyl-terminal hydrolase 7	[EC: 3.4.19.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G11910	ubiquitin-specific protease 13
Medicago sativa L.	MsG0180002071.01.T01	_
Oryza sativa L.	LOC_Os12g30540.1	ubiquitin carboxyl-terminal hydrolase, putative, expressed
Cucumis sativus L.	Csa010544	_
Glycyrrhiza uralensis Fisch.	Glyur000135s00007327.1	_
Codonopsis lanceolata	Cl_chr04_55290T	_
Arachis hypogaea L.	AH09G23090.1	Ubiquitin carboxyl-terminal hydrolase 13 like

Expression pattern