Gene detail

Detail information of Am06G025780.1 Annotation

Gene ID	Annotation
Am06G025780.1	ubiquitin protein ligase 5

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G025780.1	mRNA	Chr06	145101928	145110749	-

Sequences

CDS:

>Am06G025780.1
ATGTCTCTGATCGAAACCCCTTGGCTCCCCCGTCACCCGTCGAAACGCAAATTCGACGAAGATGTGAAAGACGTGTCGGATTTAGTGTGCGTCAGAATGAGGAAAGGGAAGGCCAAAGCGGTAAATTCCTGTTTACACCACGGTGGTGGCGTTGGTGGTGGCGTTGGTGTTGGTGGTAGTAGTAGTAGTAGTAATGAGGCGTTAGACTCATCACGATCACGATCACCCTTTCAGTTCTTCGTTCGCATGCTAGAAGGTGGTGGTAGCACTGGTATGTTCGCTTATCCCGAAGACACCGTGAAATCCATTCACGAACGTATCAAAACCATGAAGCGAATCCCTCTTTTCGATCAAAGGCTAATTTATGGAGGGAAACAGCTTCCGTGGGATCAAACCCTCGCCGAGTGTGGCATCGATAAGGAAGCGAATGTTCACCTCGTTGGAAGAATGCGCAGTACCGAACACCCTCTGGCTTGGCGGGCTATCAACGAAATGGTAACCATTGTTTACCGTCTTTGCAAAGGTGAAGCCATTACGGATTCTCTCAAAATCATTAAGAGTCTTCTCGATAGTTATGTTAAGCTAACCCCTGACATTGACGCTACCCCTGCCAAAGTCTCTGATTTTTTTCACATTTTGACTGCTATTTCATTCCCTTCCGTTCTCATCATGCTATATGTCTCTTCTTATCCTGGTAATAAGCTTTCTGGTGATGCTTCTATTAGGCATTTTATGACTTGTTGCCGCGATACTTCGCATAAGTTTGAGTATGCTCTTGTAGTGGTGGAGTTTTGCAAATTGCTTAGGAGACGACTAGGTTCTCAGGACCCTTTGTATCAACTTTGCCGGAGTACTTTAGCGTTATTGGATAGTAATTCAGCTTCTGAGACCGAGAATGCAAACAATTTTTCAGCTTCTGAGACTGAGATTGCAGACAGGAAGAAATCGATTCAGGATGTTGTTTACCCCTTTATTCGCGAGGTTTGTACTAGCTTAGTGACCAATTTGGATTTGAGTATGGAATCTCCCTCCCTTGTTGGGCCTTTGATGGATGATGTTGTGGATTTCACTTCCTTCTCAAACCGTTTGGGTGTTGACGACCTTCATCTGGTATTGAACAAAATGGACCAGTGCCTTCAAAAAATGGAGCAGAGAATGACCCGCCAGGAAATGGGCCAAGGGAATAAGAATTTGATTCCTGCCTGCTCTCATTATCTGGCCATTTTTAAACAATCGTATAAAGCTTTTAAGTTTGCTCGTTTTCCTGAGGAAAAGCTCTGGAACATTTTGATACGCCAAAAGAGTGTGCTGTGTCTGCTGATCGTTCGCTATGCAAAGAGGGAAGACGAGCATCAGTGGCTTCTCGAGCACAGGAGTGTCACCAATTTCGAGTCTAGGAGGCATTTGGCCATGTTGATGTTCCCCGAGTTAAAGGAAGACTATGAGCAGTTGCATGAGATGCTCATTGACAGGTCTCATTTATTGACTGAATCTTTTGAATACATTGTACGAGCTGACACCACATCGCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCAGGTGTACTGAGGGAGTGGTTCTTTTTGGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCCTGCCCAAATGATAAAAGGAGATTTTTCCCCAATCCGGTTAAGTATTTCTGGATCATCAAGTTTAGCTTATCCGTTGTCTCCTTGTTTGAAGCTTCCAAGGTACATCCTCTGCATCTTGACTACTTCAGCTTCTCTGGTCGAGTTATTGCATTGGCTTTGATGCATAGGGTGCAAGTAGGCATTGTTTTTGATCGTGTGTTTTTCTTTCAATTGGCTGGAAAGCATATTACTTTAGAAGATATAAGGGATGCAGATCCTGTACTATATTCTAGCTGCAAGAAAATAGTGGAGATGGATTCTGATTTCATTGATTCAGACGCATTAGGACTGACGTTTGTTAGAGAAGTGGAGGAATTAGGAGAAAGGAAAGAGGTTGAGCTCTGTCCCGGTGGAAAAGACATTGTAGTTAATAGTAACAACAGGGTGGAATATATTAATCTTCTTATAAAGGATCGTTTTGTAACATCCATATCTGAGCAGGTGTCACACTTTGCCAAAGGTTTTGCTGATATTCTTTCCACTTCAGAGCTCCGGAAATTCTTCTTTCAAGGTTTAGAGCCTGAAGATCTTGATTGGATGCTGTGTGGGAGCGACGATACTATTTCTGTTGAAGATTGGAAAGCACACACCGAATATAATGGCTATGAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATATTGGGGAGAATGACAGCAGAAGAAAGGAAGGTTCTTCTCTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCTGTGGTTTGGCTTCCCGTCTCTACATTTCCAAATCCCATGAACCCGGTGATCGCCTTCCTTCATCGCATACATGCTTCTACCGGCTGTGTTTCCCAGCTTATTCATCTATAGCTGTGATGGAAGATCGTCTTAAAGTTATTGCTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA

Protein:

Promoter(3k):

>AM06G025780.1
ATTTATATTTTATTATCTTAAATCTATTTTTTTGATAATTTTTTATCATATAAAATAAGGAAATTATTCATTTTACAAATAGATAAAATTTTTAAAATTGATTTTATTGAATTAATTATTGTTTATATTTTAGATTTTTTAATATTAATTTTTTTAAGTCTTACTTTTATTTTAAATATTGTCAGATTTTATCCCTTTTTTATAAGGCTATTCGGCCAAAAAGCACTAAAAGGAGATTTCCAACTCTACTTATTGGTATTTCGTATAAATATCCTTCCACTTTCCATCTGATTGTAACACGTGTCACCAAATTGCATCTGATTGTAACACGTGTTACCACTTTCCACCCCGTATTATACGTATTCGTATATATGCCTAGGAAAGGAAAAAGAGAAGGAATGGTTGTTCTGTAGTTTTGCTAAAAAGTGTGGGCAGTGATTTCGGGAATAAGACAACGAAAAAGGAATGGCAGTTTTGTAATTTTGCTAAAAAGTGAGGGCAATAAATTCGAAAATAAGACAATAAACAATAATGGCATTTGTGTAGTTTCACTAAAAAAATAAGGGCAATCAATTTGGGAATAAGACGAAAAAAAGTGATGGCATTTTTGTAGCATCTGATATGAGAATTTCAAGGAAACTTTTAGGTGATGTGTTAAATGACGTTGGTGATCCTACTCAAAGAACTGATGTGCAATATGATAAGTCTGAATCGGTGGTGTCCAAGATCCAAAAGAAGAAACAAAAAGAGTAATTGGTCCAAAAAAGTATAGGATACAATACTCGTTCAAAGACAAATTGTGTCTCTATCTCTTTTTTATCAGACTATTGTAAGCTAGTCCTAGAATTTTCAGAAAAACAGAATTTTTCCAGATAATTGTTGGCTATAATTCTCGTTCAAGGACATTGTTGTCTCTGTCTCTTTTATCTAACTACTGTAAGTTAGCAGTTTTATTTTAGTTTTTAGGATGAAGTGTTTTAGGGGGCTCTATTAGGGGTTTCCTATTATTGTTTTGAATTCATCTTCTCTTTTGTCAAGGGTATTGGTCTAGCCCCCCTTGAGCTCATTTCTGTCATATTTCTTTTTCTCTTTTTTTAATAAATTTAGGACATGAAGCATATTTGATTAAAAAAAATATGCATATTATTCTCTAGGAAGAAAGGCAAAAAGGATGATCGTGACCTAAGACCTAAATTGAAATTTTAAAAATATCATTTTTTTTTTAAATTACAAAATAGCACCGAATTGCATATTAAAAGGAACTCAAAATCACAAGTTACTATACGAAGTCCTAGTCTTTCATGATATTTAGTATTATATCCTACAACCGTAATACGAAGTACATCGGTGAGAGAGTTATTTACTGCGTCACCTTAAAAGCCATCCCATAAAATATTCTACTAGAGAAAAGTGTTTCTCCTATGCCATGCCAAGTATATGAAGCATGTTTGATTAAAAAAAATATGCATATTATTCTCTAGGAAGAAAGGCAAAAAGGATGATAGTGACCTAAGACCTAAATTGCAATTTTGAAAATATTATTATTTTTTTAAATTACAAAATAGCACTGAATTGCATATTAATAGGAACCAAAAATCGCAAGTTACCATACAAAGTCCTAGTCTTTCATGATATTTAGTATTATTTCCTACAACCAGTGGCGGACCTAGGACCCTGGGTCAGGGGGACAAAGTTTTTCAAACACACACATCACTAAAAATATAATAAAAATAATACTTTAACAGGTTCACAATTTGTGTTGAACTAGACCAACACAAATTAAATAACACTAATAAGTTCCTAACTTAAATAGCACTAAAAGAATCAACATATTTACAAAATACAAAGCAGATTCAAATTAAATAGACTAACATAATCAAAATAAATTAAATATCACTAACACAAAATACAAATTAATTAAATAGTACCAACACAAATTATCTATTAAATAGCATTAAGAGAATCAAAATTAGGATAATAAGAATAAGAACCGATTCAAGTAGAGATAAAAACTTTTTTTTAATAAAATATATGAGAGTGATGCAAAACTAGAAACTTTGGTGCAAAATTAGGAACTTGGGTGCAAAAGATATTTTTTAGGGGTGCAAAAACATTTTTTTCTTAGATATCGGTGCTAATTTTATTTTTTAAGGGGGTTCTCCTGAACCCTTAGAATACATGTAGGTCCACTTATGTCTACAACTGTAATATGAAGTACACCGGTGAGAGACTTATTTGCTCCATCACCTTAAAAGCAATCGGATAAAATGTTCTACTAGAGAAAAGTGTTTCTCCTATGCCATGCCAAGTATGCAACCATCGTTGTCTTTAACCATATTCAATGCAAATAAACATTTTTTTGGAAATTTCCAAAAACGCATTCGGAAAGGCTGACGACACCACCACCACCTTTCCTTTCTTTTTTTACAAAATTTTAAGGAAGGGGATAACGCCGAGTCCAAGCAAAAAAGATATTCAGACTATGTGAGCAGTTATGAATACGGAAGTAATTACATTTACCTCATTTCAAAAAGACTAGTGAAAATTTGAACCCAATACTCTCCGAATACAAATCTTGTCATACACTAGCGGGCAAACCATTGAGCTAGTCCAGCTCCGTTATTATTGGTAAAAACTTAACAAATAAGTTTGCCAAAAAGGACAAATATAATAATAAAAAAAGGAGAGGAAAATATAGGCGAACTCACTCACTCAGGGGTGCGCCTTTGCTCAGAGCAACACGACACCGTTTGGAAGGCAATTGAAATAAGTTAACCGATTGTATTGTTAATTACACACACACCAACCCAAAGTCTACTCTGCAGACACACACTCTCTCTCACGCACGCTTTGTGAAAATGTTTGTGTGATTGACGACGCGATTGGGGTTGTTTCTTCGTAATCGTGAGAGCAAGACTAGTAATAATAATAATCATTAATCAATCAAGCGCTGCAAGGGCAAGCGACGGCGAAACGATGATGTTTTGCGCGTCCTAACAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00632.28	HECT	535	855	5.70E-72
PF00240.26	ubiquitin	80	151	1.20E-13

Gene family

Gene family	Subfamily
Ubiquitin Family	HECT

Gene Ontology

GO term	Description	Category
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0140657	ATP-dependent activity	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0032968	positive regulation of transcription elongation by RNA polymerase II	Biological Process
GO:0006367	transcription initiation at RNA polymerase II promoter	Biological Process

InterPro

InterPro term	Description
IPR029071	Ubiquitin-like domain superfamily
IPR000626	Ubiquitin-like domain
IPR035983	HECT, E3 ligase catalytic domain
IPR000569	HECT domain

trEMBL

trEMBL term	Description
A0A445G0I7	_

SwissProt

SwissProt term	Description
UPL5_ARATH	E3 ubiquitin-protein ligase UPL5

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G12570	ubiquitin protein ligase 5
Medicago sativa L.	MsG0880047705.01.T01	_
Oryza sativa L.	LOC_Os09g31090.2	HECT-domain domain containing protein, expressed
Cucumis sativus L.	Csa000539	_
Glycyrrhiza uralensis Fisch.	Glyur001495s00036173.1	_
Codonopsis lanceolata	Cl_chr01_45190T	_
Arachis hypogaea L.	AH04G05000.1	E3 ubiquitin-protein ligase UPL5 like

Expression pattern