Gene detail

Detail information of Am06G024980.1 Annotation

Gene ID	Annotation
Am06G024980.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G024980.1	mRNA	Chr06	143360311	143363850	+

Sequences

CDS:

>Am06G024980.1
ATGGGTGGTTCATGGAGTAACGGTAACGGTAACAGTAACAGAAGAAGAAGAAGAAACGGTTACCTTGACCACCACCCACCTCCACCTCCACCTCCACCTCCTTACTATTACTCTCATCATCATCCCCATCCTCCGCCGCTTATGCCACCGCCACCACCACAAGGTTACTTCTTTGCCTCAACTAACCCTTCCACCGCCAACTACATGCCTCCTCCTCCTCCTCCTCCTCCTCAATTTTACTCAAACGGTTACACTACCGCTCCCAATTCCATGGTTCCTCGCCTTCATCACCAACCTTTCTATACAAATAATAATCAACATGATGTAAATGTTCGTCCTCCTCCTCCCTACGTTGATCATCAAACCGCTAAGAAGGTAAGGAACGATGTCAATTTGCATAAACACACTCTCCGACTCGACCTCGATCCTCACAATCCTGATCATCACTTGATTTCCTTCGTTTTTGATGCTCTATATGATGGCAGAATTACAATCTTTTACTTAGCCAAAGAAGAAGAGAAGTGTAGGTTTATTCCTCTATTTCCCGAATTATTTGAGCCAATCACGTTACCCTTTCAGAAAGGAGTTGGCCAGAAATTTTGTCAGCCTTCCGGAACGGGTATTGACCTAGGTTTCTTCGAGTGGGATGATCTTTCAAAGCCCTCACCTGAAGAAGATGTATTTCCCCTTGTAATATGTGCTGAGACAAATGTGACAACCGAATTGGCAGATGAAACTCCCGGTAGTTCAGTAGTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAAGCAATGGTAGTGGTCCTTTCCAGGTGAAAGTAGTTCGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTGAGAGAGTTATATGGAATTGGAAACTCTACAGCAGCTGATTTTGATCATAATGATCCTGGGAAGGAGTGTGTGATATGCATGACAGAACCCAAGGATACTGCTGTCTTGCCTTGCCGACATATGTGTATGTGCAGTGAGTGTGCTAAAGCTTTGCGGTTACAGTCAAATAAATGCCCTATATGCCGCCAGCCTATTGAGGAACTTATAGAGATCAAGATAAACAATGGCGACCAATGA

Protein:

Promoter(3k):

>AM06G024980.1
GGTTGTCTTGTTTGTGACAAAACTATCTACTCAATACAATTTGGAGAGCTGTATCTGATGGTTACATATAGGATGTCTTGTTTGTGAACAAACTATCTACTCAATCCAATTGGAGAGTCGTATTGTCGGTCTGATATCGAGGAGTTCTTGTGTGATAAGAAAATGTTAATGCTTTAGACAGTTTTGCTTTTTCCAATATCTTTCAAGGTTTACTGGCTTCAAAAAATGATTGAAATATTCTGAAAATCATTAATATCACTGTTGTTGTTTGTTGACTTCTAATTGCCTTCAGTTAATCGATCTACTTGTTTATTATTGCTACTGCTGCTGCTATGTAAGGTTTTATTTCCAAGAACTGTTAAAATATATGGCTTCTTTCAAGTAGTGGGTATATTTATCATTCTGTTTTTGTTTCTGCATTGCAGCCTGGTTATGAACGTCTATGTTGCTTGAGGTGCATACAACCACGCGATCACAATTTTGCCACCACTTGTGTTTGCAGAGTGCCCAAGGAACTTAGGGAGGAGAAGGTTATAGAGTGTGTTCATTGTGGTTGCAAGGGCTGTGCAAGTGGGGACTGATTGGAACTCAATTCTAGCATCTGGAGAATTTGTTTAGAATCTTTTTACTGTGCTTTGAGGTTTTTGTTTTCTGAAACCCACGAGGGGCTCAACTTCTCCTGGTTGTGTTCAGTAACAAAAAGCACATTGGGAGTATTAGTCAATTATTATCTGCTTACTTCAAATCTTGACTGAGTTTTGTAACATTTGGCTTAGAAGAATCGAACAAAATTGTATGTGAACATCTTGTAATCCTTTTCGCCCCTTGTATAAATGTGTGTTAAACGCCTTTTCTTGCTCAATGCAGGCTTTTTCATTTCAAGTGTATCCATTTTTTACATGTGCTCATTTTTGTAAGCAAAAAAACTAAGGGCCTTTGACAAACAAAATTTAAAAGTAAAGGCTATTGTTGAGATATTTATTGACTCTTATCATCCATCTTCCGTCAATAGGAATTCTTCAATTCGAGTGACAATAGTGAAGGAAAGATACTTCTAACTACATGAAGGTTGAGCATTCTCTGGAGAGTATTGGACATGTTGTTGTCCCATTTACGGCGGGAATTTCCCCTGTTTAATTTCTCAGCTAGTAGTCTTGTTTATTATGGAAAAGAAAGAACAAGTTAAAAAGTACTCCAGGAAGAATGCGATTGAGCTCCAAGTTTGGCTAAGAAATTTGCTGAAGCGTTTCCCTCTCTGTAGCTAAGGACCAAACTGACATTCCATTACAATTGTAATGCACTCTATGGATCAAACCGACACTCCATTGCAATTGTAATGCACTCTTGATGTTTTGGATGACCGAAGCATAATGATGATAATTATTCTCATTCGACTTGATTAAATCCATCGTGACTTGATTAAATCTGTCGTGTGCAGCGAGTCCGAATAACAGATTAGCCTCCTCACACCTATGTCCCAAGCTAAACTCAAACCTTTGAAGAGAGCCATGAGTTCCGCATGCAAATTATTGTAACTCCCAAAGAGCCAGCAGAGCCATCAATCCACTCATCATCGTTTCTCCTAATTAAACCACCGAATCCGGAGGGACCAGGGTTACCAAAACTACTCCCATCCACATTGAAAATGACACAATCTTCTCTTGTAGAATGCCAAGACACTAATCTAGGGGCTGCGGCAACTTGCTGCTGAGAATGCATTGAATTTAGAATCAAGGAGCGAAGTTGGAAACCTCTAACCGAAGTTTGAAGTAAGGAAAGTCCTCCCTGGCAATACAATCCGAGTTTTTAGGGATTTTACTTAAATTGATCTCACATTTTTAAAACATTATTTAAGCATACATCATTTGTTCAAACTATTTAAATATACCCAAAAGAGTTTGAATGAAGTGATAAGTGTACCTCTTCTAGCTGAGCATGTGGTCCTTAGTTCGAATCCACAAGTAAACCTATAGAGCAAGCAAGCTTATCAAAGTATCTCCCACTAATGTGTTTGGGTATCTTTTCGTCGCCATCTCTTCGATTGTATCACTTATAATATAAAAAACTCATCTTACATAAGGGGACACATTAGAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACACCTATTGTGAGTTTTAAAAATCAAAGTTGCGCTTCATATTAACAAGATACACAAATTAGCACAACGTCTCCACTATCGAACAACTTGCAAGGTGCAGCCAACACCTAACTCAAAAATTCCAAGTCCAAGGAGTTTCCAAATTCTAGTTACGTTTCTAACCTTATTATCTATAGCTTATTTTTTGTCTATTATCTTTATTAGTGTTTAAAAATTGTCCTTATCATTTGTTTTGTTTTAAGTCACCATTATTGGTGTTTGCAATGAAACTCGTGGAAAGAAGCATTTTAATAAAACTTATATAAGATAAAAGGTCAATTTAGAATAAAAAAATCGAAATCGAAATCTAAAATAATGTTAAACATAAAGTGATGTATCTAAAAGTAAACACATTTTTCTTGCCACATTAATTTTCATGTCTTTTGAATATTTTAGAATTTTTGAAATTTATCTTAAAATAATATTTCCTATTCTAGAATAATATGTAAATATAGTTAAATGTATTTAATTTTCTTAATTCAGATAATAAAGAAAATACCCTTAATTATAATAGTCATCTCTTCATAATATTAATAAACTAATTTAAAAATATTGTCGAAATAATAATATTAAATACAAATAAATTAATTGATATTCATTGAGTAAATCAAATTTAGGTAATTTTTTGTTTATCCGGTTGCTTGTGGAAGAAAAGATGAAAGGGGAGTAAACATAAAAAATAGGCAATTGGTTTAATACAGTAATATAGTAAATGTGAATAGCAGCAAGTCATAGCAAGTTGTTGTTCTTGTAAGAATAACCGGATCTGGAGGAGTTGTTGACACCTCCAATTTTTCGTCAACACCAACAAACAGTTGAAGAGTGAAGCTGAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13920.9	zf-C3HC4_3	313	359	2.90E-17
PF14447.9	Prok-RING_4	315	358	3.40E-08
PF13639.9	zf-RING_2	313	354	2.00E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0061630	ubiquitin protein ligase activity	Molecular Function
GO:0016567	protein ubiquitination	Biological Process
GO:0016020	membrane	Cellular Component
GO:0004839	ubiquitin activating enzyme activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR045195	LOG2-like, modified RING finger, C3HC5-type
IPR045194	E3 ubiquitin-protein ligase MGRN1/RNF157-like

trEMBL

trEMBL term	Description
A0AAN9R2C6	_

SwissProt

SwissProt term	Description
LUL4_ARATH	Probable E3 ubiquitin-protein ligase LUL4

KEGG

KO	Description	Enzyme
K27504	E3 ubiquitin-protein ligase LOG2	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G06140	RING/U-box superfamily protein
Medicago sativa L.	MsG0880046923.01.T01	_
Oryza sativa L.	LOC_Os03g15000.2	Zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa000072	_
Glycyrrhiza uralensis Fisch.	Glyur000853s00029673.1	_
Codonopsis lanceolata	Cl_chr08_15330T	_
Arachis hypogaea L.	AH01G28300.1	Probable E3 ubiquitin-protein ligase LUL4 like

Expression pattern