Gene detail

Detail information of Am06G024770.1 Annotation

Gene ID	Annotation
Am06G024770.1	galacturonosyltransferase-like 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G024770.1	mRNA	Chr06	142572279	142574419	-

Sequences

CDS:

>Am06G024770.1
ATGGTCTTTTGCAGCTTCACCTCACGTGTGGTTGTATTATTCATTGGCCTCCTGTCCCTCCTCCCCCCCTTCACCACTGCTATCCGCCTGGGCCTCGTCCGTCTACCTTCATCGGACCTCCCTCTTTTCCGAGAAGCCCCCGCCTTCCGAAACGGCGAAGAATGTGGGTGTGATCGTATAAATGTAGCTATGACCCTTGATGTAAATTACCTTCGCGGCACAATGGCTGCAGTGTTATCAATGTTACAACATTCTACATGTCCAGAAAATCTTTCATTCTTCTTCCTCTCTGCTCGTGATGCTCCTGAACTATTCACAAGAATCAAATCCACCTTCCCTTATTTAAACATGAACATCTATCGCTTTGATTCTAATCGTGTTCGTTACAAAATATCAAGGTCCATTCGACAAGCCTTAGATCAACCTTTGAATTATGCAAGGATATATTTAGCAGATACTGTCCCCAAAGAGGTTCAACGAATAATATATTTAGATTCTGACCTTGTTGTTGTGGATGATATAGCTAAGCTTTGGAGGGTAGAAATGGAAGGAAAAGTTGTAGCTGCACCAGAATATTGCCATGCAAATTTCACACTATATTTCACAAAAGATTTTTGGTCAGACCCAGTTTTAACAAAGACTTTTGAGGGAAGGAAACCGTGTTATTTTAACACAGGGGTAATGGTAATGGATGTAGATAAATGGAGAAAAGAAAGGTATACAGAGAAGGTTGAGGAATGGATGGAGGTGCAGAAACAACAGAAGAGAATCTATCATTTAGGTTCTCTTCCACCATTTTTGTTGGTTTTGGCAGGGAATATTAAAGCAGTTGATCATAGGTGGAATCAACATGGTTTAGGTGGAGATAATTTTGAAGGAAAATGCAGAAATTTACACCCTGGACCTATTAGTTTGTTGCATTGGAGTGGAAAGGGTAAACCATGGTTGCGATTGGATTCAAGGAGGCCATGTATTGTTGACCATCTTTGGGCACCTTATGATCTCTATAGATCATCTGGACATTTTTTTGAAGATTGA

Protein:

Promoter(3k):

>AM06G024770.1
GAAGATTCAGATTCAGAATCTGATCCTGTAGTTTTTAGCATGATAATAGATGACTTAGAAGAAACAGAAACTAATGAAGTTTCTGTGGATATAGTTGAACTTGAAACAGAAACTAAGGAAGTCTCTGTATGTTCAAAAGTTAAAACAGAAACTAAGGAAGTTTCTGTGTGTTCTGTGACTGAACATGAAGCAGAGACTAAGGAAGTTTCTGTGATCCCTAAGGCTAAACTAGAAGCAGAATCTAGGGAGGTTGCTGTGAGTTTAGAATCTGAGTTTTCAAAGTTGGTGAATTTTGAAACTGTGAAATCTGTGTTTTCAGAAACTGTGGAGTTAGAATCAGTATTTTCAAAAACTGTGACTTTTGAAAATATAAGTGTGAAAACTGTGTTTTTGGAAAATGTGAATTCAGAATCTATAATTTTCAAAACTGTGAGTGTAGAAACTGTTGATTCTGAAACTGAAACAGAAATAGGAATTAAGGCAATTTCTATGATAACTAAAACTGATCCTAGGATAAGGAAATACTGTGAATATGCTACTTGTGCTATTTCACCTAACATTGGCAGGTTTATTGAAGTAATGTGGTCCTTGAACTATGGCTGTTCAAGCCACATGGCTAGTCATAATGAATGGCTGATTGACTCCTATCCTAGAAGGAAAATTGGTAGTAAAGATAGTGAACTTATTACAGCAGCTGGTGTGAGGAACTTAAGGTTCAAAAGGAAAGTTGGACAGGTAATATCTACTAAAAATATTTCCTATGTTCCAGGCACTACTTGTTTAATAGGTAAACTGTTTGTGAAAAAGCTGAAATCTGAGATTAAGGAGTTAATTCAGATTGGATATTCATCTACTACATATGGGCCACTTAATGTGTTTACATTAGGTGCCAACAAAATTATTTTAGCTTGTGTAGATGAATATGGGACTCAGATCAACCACGAAGGTAGGGTTTTCATCATCGCCTTCAAGAATCATCACCGGAGGAGAGGGACGAGCGTTTCAGCGCTTCATCGCTGCCGGAGCAGCAAGAGCACTGAAACAGTAGCGAACGGTTGAGGGAGAAGAAGAGAGAACGGTGGAAAATCAAGAAACGCGTGAAGAAATCAAGAAACAGTGACTTAGGGTTTCTGAAAGAAACCATATATACTGATCCGCTTCCCTGACCCATAACCCGGTTCCTGGATCCGCGTGTCTGTACAGTGCTTGACCCGTTGGGTTCCGCACGGGTCAAACTCTTTGGGCTGAAGAGAAGTGGGCCGTGCAATTGTTTTCTGCACCCCAACAATCTGATTTCACAACCTGTAAACAATAGCAATCAAATGGTTAGCAAATTCAACACCAAACACCAGTTGTTTAAGCTGCTCAACAAAAATTGATAAAGCCCAGAAGAATGGTTGATGTGCGCGAAGTGATTGGTGTAGGAGACGAGATGGATTTACAATACTACAGGGAAAATTTTGCGGAGATAAGAACGCTACCATCCATGTGGAGAAGCTCAAGAGAGAAGGGAACGAGACGGTTCCGTTTTTGCTTTACGTTCATTATCCAATCCTACACCCCAACAGGTCCGTTTTTGCTTTACGTTTTTTTAATTTTATTGACCTGTCAAATTTTTATTCGTGGTGCCTAAGGATGATGCATTAGTTCCGTGTCCATCTAAGAATTACTCGTATAAGAAAGTAATGTGCATGATAAATGGATGTGGGAGTAACTTGTAACACTAGATTTTTAAATTCGATTAGGTTTTAAACCTAATTTAAAACTGAGTCATTAAAACTTAACCAGTTTTAGAGGGGAGTGACTAAATTTATTATCCAAACAATCTAAATGGTTTCGATTTGGATATCGTTTGGTTTTTTGGAAAATCCATGCATCCACACACTAATGAAATTGATGGTTTTGGTGGGTGGTGTGCTGAAAATCCTTTCTACATAGAATTAAGATGTTTTTTTATCTTCTGCTTAATCATTTCCAGATAAAGGTTGACTAGTTTCTCAATAATGACTAATATCATTCTATATCAATGAAAGTATGAAACCCAATTGCTAAGAAACCTATAAAAACCCAAAAACCCAAAGTCCTACATGTTTCTTCAGCTTAAATTTAATAGACCCTTAAAAAAATAAAATAAGAGTTATTTTTATCAATATAAATATAAATTATATAATAATATAAAAAATATGATTTTGGGGAGGCCTATTTATCAATTACATATTTTGGACTAGGCTTGAAACCCTTGCTTTAGCAGCCCCCCACCCCCATGGGCCGGCTGTAATGCCTTCATACTGTCCTTCCTCTGTGAACTCAAAAATAGGAATCAGCAGAAGCGTAAAATTAAGTATAGTAACACCAAAAAAAAAAAATTAGCATGAAAAACTTCTCAATGTAAGCAAAAAAAACCATGGATCCGTGGCGTCTTAAACATAATAATAATAATAAACATAATAGTAATAGTAATAGTAATAGTAGTAGTAGGAATACAAAATCTTCACCTTAGGTGATCTCAATACAATGCAACATGTCAAGTGCATCACATGCAACATGACAATGTGTCAATGGTCGACCCCACACGTTATTTATAATTTTAATCTAAACCAATTTTTCATTTTATATTTATATATATAAATATAAGTTTTTATGCATGTGTTTTACATACTAAAGTTTATGTGAGTGCGTGCGTGTATAAAAATAAGCAAAAAAGAACCAAATTATTTGACAATTTTAACCACCCTTTATTGTAGTAGGTTGAAGCCAAATATGTTTGTAAATGATTCCATCTGTAGTAAAAGTCAAAGATAGAGCCCGATAGTTTCTCTTATCCTCACAATCACGATTTACACCCACACACAATCTGACCACCTCGCTAGATTCAATGGCTTTTCTTCATCAGATTTTATTCTATGAAATCCCTGAAATCCAGATTCTTCTCCTAAGCCTGAGGACAACCAGAACAAAACAACAACAAAACCTTGTTTGTTTGTTTTCAAAACAGACAGG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01501.23	Glyco_transf_8	61	317	8.20E-53
PF18404.4	Glyco_transf_24	78	246	9.90E-11

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT8

Gene Ontology

GO term	Description	Category
GO:0016757	glycosyltransferase activity	Molecular Function
GO:0005794	Golgi apparatus	Cellular Component
GO:0090406	pollen tube	Cellular Component
GO:0045489	pectin biosynthetic process	Biological Process
GO:0098588	bounding membrane of organelle	Cellular Component

InterPro

InterPro term	Description
IPR029044	Nucleotide-diphospho-sugar transferases
IPR002495	Glycosyl transferase, family 8

trEMBL

trEMBL term	Description
A0A072UQZ6	_

SwissProt

SwissProt term	Description
GATL4_ARATH	Probable galacturonosyltransferase-like 4

KEGG

KO	Description	Enzyme
K20893	probable galacturonosyltransferase-like 1	[EC: 2.4.1.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G06260	galacturonosyltransferase-like 4
Medicago sativa L.	MsG0380016638.01.T01	_
Oryza sativa L.	LOC_Os03g24510.1	glycosyl transferase 8 domain containing protein, putative, expressed
Cucumis sativus L.	Csa019210	_
Glycyrrhiza uralensis Fisch.	Glyur000945s00028125.1	_
Codonopsis lanceolata	Cl_chr06_40950T	_
Arachis hypogaea L.	AH11G29780.1	Probable galacturonosyltransferase-like 4 like

Expression pattern