Gene detail

Detail information of Am06G023840.1 Annotation

Gene ID	Annotation
Am06G023840.1	RNA-binding KH domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G023840.1	mRNA	Chr06	139493722	139498082	-

Sequences

CDS:

>Am06G023840.1
ATGGCCACGGCGGAGCTAATCCAAAACGGTACATCACAACCACTAACGGAGACAACTACTACTTTGGATGCCGCCAACCCCAACCTTTCCACGGAGGAACCTGAATCCGCTGATAAGAGATGGCCCGGTTGGCCTGGTCACTGCGTCTTCCGCTTGATCGTGCCGGTCCTCAAAGTCGGCGTCATCATCGGCCGCAAGGGTGAACTCATTAAGAAGACCTGTGAAGAGACTCGTGCTCGCATTCGCGTCCTCGATGCTCCAATCGGCACTAATGATCGAATCGTACTTGTATCGGGGAAGGAAGATTTGGAGGCACCTCTTTCTCCTGCAATGGATGCTGTAATAAAGGTTTTTAAACGTGTCTCTGGATTATCTGAAGTTGATGGCATGGATAAAACATTAGGAGCTGCCGGTGCTGCATTCTGTTCTATCCGTTTATTGGTAGCCTCAACACAAGCTATCAGTTTGATAGGAAAGCAGGGATCATTAATCAAATCTATACAGGAAAGTACTGGCGCTTCTGTTAGAGTATTGTCTGGAGATGAGCTTCCATTTTATGCTGCTGCCGATGAGAGGATCGTTGATCTGCAGGGAGAAAATCTGAAGGTCCTTAAGGCTCTAGAAGCAGTACTTGGGCACCTAAGGAAGTTTTTGGTTGATTATAGTGTTCTTCCTCTATTTGAAAAATCTTCCAACTCTACAATCTCCCAAGACCCCAAGGCAGATGTCTGGGCTGACAAACCATCACTGTATAGTGCTTCACAACCCAGCATTGTTGCTGATATTCCACTTTCAACGAGAAGAGATTCTCTCTTTGCTGACCGTGAAAGTCAATTGGATTCGTTGCTCTCTTCCTCGACAATGTCACTATATGGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCGGCTCTTAGTCGTGCCAATGCTTCCATTGTTACTACGGTAATACAAACTATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTGTGCAAGGGACTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCCGATGAAATCATAGTGGAAATAAAAGGCACCTCATCTGAGGTTCAAACGGCACAACAATTAATTCAGGAAGTTATAAGCAATCACAAAGAAACTGTCGCTAGTAGTTACGGCAGGATAGATACGGGTCTCAGGCCTTCTTACTCTCAATTGGGCAATTCAGATACAGGTCTTAGGCCTTCTTACTCTCAATTGGGAAGTTCATCGTATTCCTCATCTTCCCTATCCTCGCAACCCTACAGTGGCTATGGTGGATCTTCCAATCTAGGAGGCTATAGTAACTTCAGACTTTAA

Protein:

Promoter(3k):

>AM06G023840.1
TACGCATCTCAACTTTATCACTTCTTCCGTCTCTTTTGTATCCATCTTCCCACTCTCTTAAGTTTTTTGGGTTTTCCTCCTTGCCGCTGTTGTAATATCCTCTGACCAAAACTATATGAAAAAAAAAAGGGCGTGGTAGTTCCACTATTGTTCCAAATTGCTAGTATTAATTTGTCCCTCTCTAAATAACATCAAGATTTTGTGATTTATATCTAACAGCTAACCTCGAGACATTAGGCCTTATTTTTGTGTCTCCTTAATTGGATGACAATTTGGTTTCCTCTTGGGCTATCTAAAGTTCAAATCTACTAAACTTCACTACTTTTTTTCTTATGCACTATCTCCCCACAAAATACTTTTTCCTTCAAACTTTGTGAAAACTATAATTTTTTCAATTTTCAAATGTTTTATAAATTGTATTTTTAAAGGTAAAAAAACTCTTTTCATATAGGATTTCGAAATGCATAGTTGAATATTTTGGAAATCAGTAAGCTTTTGGAGAAATTTTAACTTTCCAAAGCACAAAATTTTGCATTTCAGATTCTAACATGGTATTTTTATACCTTCTAGAAATTTAGTTCTAGAAGTGAATTATTTTCTTGTAAGATTGAAATGCCAAAAGATGTGTGCTATATATTGGGATGACAATGGTTTGAAAAAACTGCATTGTTTGAGCTCATATTTGTATTTTTTTAGTGTCTGTTCCCATGCTCTCTAGGCACTTAATTGTCCGTATACCTACACTTGTTATCTACATTTTAGCTATGAAACAATAATAAATAATATAAAGACTATTATAATTCAATTAATAAGCAATCAGTTTTTTTCTCAAATCTACTTAGTAAATATTATAGATGATAATATTTAGCAAAATAAAAATATTAAAATATTATTAGCTAGATATAATGTTTAATGGCCTTTTAAAAAAAGGATAAAGTTAAAGAGTAAATTCCCATTCCTAACAATTTTTGTGGGACAAATCAGTCAATGACAATTTTTTATGAATAAATTAGTCTCTGACGACATTTTCAAACAGGGAACATATTAATCTCTCCATCTAGCCAAGCTACCTTCAAACTATCACATAGCATTGATGATGTGGCATGTTATGTCCTACGTGGCACATTAAGTGACACGTAACTGTTTGACCCCAAGAGGTTTTAACGAGACCCATTGAAATTGTTCAGGTTGGAGTACCCCTTGTACTCCCTTCAATAAAAAAATGACACATAATCTTTTTTGGGCCACTTTAGTCTCTCACTTAAACCTTATCTTCAATTTTCAAAAATGGGACGGTTTATTCCTTAAAACATTCACTCACAGCTAATCATCTTGTTAAAGAATGCGGAATTAGTGTTCCCTAGCTCTCTGCTAGGGTTTGGTGGTGCCTAATGACGCCCTCCTCCCCAGCCAAGTGAGGCATCTAGCGTTGCCTCCCGCATCTCTCTGGTACCTTGCTTCACGCTGTTCTCTCTTCCGGCGGTTCCTAGGGTGGATCATAATGGCTCTCAAGCTCTCTGCTGCTTCATGCTCTCATTACTCTACTACCCTGCGACGAAGACCACCACTACCTGCTCGCCCCTCCGCTACTCTCCAGGTAAACCGGCCTTCATCCTCACGTCTAGGTCCCCACTCGCCAGCTCCGACTTCATGCTCCTCTGCTGACCTGGTCTCCTCTCGTCCCTCTCCCCCTAAACAACTAGACCCTCACGACCCTCCAGATCTTGCTCACAAAACCTTACTCTTGCTTCCATTTAGCGGTAATTGAGCCTTCTCTTTCTATCACTGGCTGATACAATTAGCAAAACCTATGGCTTCTCCGGTCTTACATCTAGTTCCCACCTCATCCTCTGTGGCCTTCAGTTTCAGATCTCTTGACCTCGGGGCCAGTTGGCCTTCAAATACGGGGAAAGTATGGACTTTCTGTCTTCCCCCCACACTAACTTTGTAGGTCTTTTGATTTGCCTGTGGTGCACCTGTTCTGCTAAGTGGTGGTGATTGGTTTACAGATGCAGCTTTGGTTGTGGCCTTGGCAAACTAGATCTTGTGGTGCAGATTTGAGACAATTTTTGTATTATGTGCTTCATGGTTATTTTTCATTAGTGTTTAATTATGCGTTTTATTAAGTTAGTTCAGTAGAATCTAGATTGTCTCAGGTGCTGCTGATAAGCTTAAATGTTAATGTAATCTTTAAGTTTCAGCTATACCTGATGTGGCTTGTCCTTTAGAGGACCTGTGAGTGTTTTCTATGTAAGCTTGTGTCTTACACTCTGTGTAATGTTTCTGTGGCTTTTACCTGTTATCAACGAAATATTGCATGATTGACCCAAAAATATGGGACAATTTAGTTCCTGCAATTTTTTGGATAGTATAGTCCATGACACCTCTTCTTTTGTCACATGTATAGTTTGGACGCTGCTATTTTCCAATTTTCATTTTGTGTACTCTCTTGCTTGATTCAACACCTTTTTTTTTCTCAATTTATTTTTTCGAACCCTTTCTTCCATCCACTTATACCTTCAAACTTTGATTCTTTTTTCTAGGGTTCTTTTATTTCCACCTCTTATCTGCAAATTTGAAATTTTATTTTTTGTCATACAAAATGAGGGTACTTTCCTTTTTGAGGCTTTTCGCTAGATAAATCTGTTTGTATCATTATTAGAAAAGTTTGAAATAGCAACAAAAATTATAGACGAAAAAATAAAGTTTGTCTCCAAATTTGGGGTCGTTAACACTTAGAGACAAATTTTGTCATTTTCCATCTCTAAATTCTATTTATTTTTCACTCAAACAAAAACCCCTAAACAATCATCTCAATTTCTATTCCTTTTCTCTCCCTTTCCTTTCTTTCCTTTCCTTTCTCTTCCTTTCTTCTATCTTTCTATCATATACCAAACAAACCATTAAGGTAAAGGGAGTCAAAATTTCAGAGCTTTCTGAAAAACGGAAAATTCACTGAGCCAGCGTCTGCACTGAAAAGTGCAAACCCTTTCCCTCCAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00013.32	KH_1	50	102	8.10E-33
PF00013.32	KH_1	144	210	8.10E-33
PF00013.32	KH_1	318	380	8.10E-33

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0010468	regulation of gene expression	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0016740	transferase activity	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR036612	K Homology domain, type 1 superfamily
IPR004088	K Homology domain, type 1
IPR004087	K Homology domain

trEMBL

trEMBL term	Description
A0A1S2YPF5	_

SwissProt

SwissProt term	Description
PEP_ARATH	RNA-binding KH domain-containing protein PEPPER

KEGG

KO	Description	Enzyme
K21444	poly(rC)-binding protein 3/4

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G26000	RNA-binding KH domain-containing protein
Medicago sativa L.	MsG0280008269.01.T01	_
Oryza sativa L.	LOC_Os10g41440.1	KH domain containing protein, putative, expressed
Cucumis sativus L.	Csa020024	_
Glycyrrhiza uralensis Fisch.	Glyur000102s00010952.1	_
Codonopsis lanceolata	Cl_chr02_27680T	_
Arachis hypogaea L.	AH01G22080.1	RNA-binding KH domain-containing protein PEPPER like

Expression pattern