Gene detail

Detail information of Am06G023440.1 Annotation

Gene ID	Annotation
Am06G023440.1	nucleosome assembly protein 1;2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G023440.1	mRNA	Chr06	138494717	138497986	+

Sequences

CDS:

>Am06G023440.1
ATGAGCAACGATAAGGATAGCTTCAGCGTTGCTGATCTCAAATCTGCTCTCAATGAAGAGGATAGAGCAGGTCTTGTGAATGCTCTTAAGAGCAAGATACAAAGTTTGGCTGGGAAGCACTCTGATGTTCTAGAGACCCTATCACCTAATGTTAGGAAGCGTGTTGAGGTTCTCAGAGAGATCCAGGAACAACATGATGAATTGGAGGCAAAGTTTTTGGAGGAGAGAGCAGCTCTTGAGGCCAAATACCAAAAGTTGTATCAACCTCTTTACACAAAGCGGTATGAAATTGTTAATGGTGCTGAGGAAGTTGAAGGGGCAGCAAATGAAAAAACAGCTGACACTGGAGAGAATGAAGAAAAAGGAGTGCCCGCATTTTGGCTTACTGCTATGCAAAATAATGAAGTGTTATCTGAGGAGATTTCAGAGCGTGATGAAGCTGCTCTCAAGTTTCTGAAAGATATCAAGTGGAACAGGATAGAAAACCCAAAAGGATTCAAACTCGATTTTTTCTTCGATACAAACCCCTTTTTTACTAATACTGTTTTGACGAAAACATATCACATGATTGATGAGGATGAACCAATATTGGAGAAAGCTCTTGGGACTGAAATTCAATGGCTCCCAGGAAAATGCTTAACACAGAAAATTCTTAAGAAAAAGTCGAAGAAGGGTTCTAAGAATTCCAAACCAATTACAAAAACTGAGAAGTGTGAAAGTTTTTTCAATTTCTTCAGTCCACCTCAAGTTCCTGAAGATGATGAAGACATCGATGAAGATATGGCTGAGGAGCTGCAGAATCTGATGGAACAAGACTATGACATTGGGTCAACAATAAGAGACAAGATTATCCCACATGCGGTGTCGTGGTTTACTGGGGAGGCCATTCAAGGGGAAGAGTTTGGAGACCTTGAGGATGAGGATGAAGAGGATGATGATGAAGAGGAGGATGATGAAGAGGAGGAAGATGAAGAAGATGATGACGATGATGATGATGATGAAGATGAGGAAGACAACAAGACTAAAAAGAAGGTATATAGTACACTAACTGCTTCAAATTGGTTTGTTTTCTATGTGGTTTGA

Protein:

Promoter(3k):

>AM06G023440.1
AGCATATTTTTTGGGCTTAAAATAGACGGGTTAGCGGGTTAGCCCGCCCAAACCCGCCAAAAAACATTAAAAAATATTTTGAAATAGATAAACCCGCCAAGAAACACCATAGCACGAAAAAAGGTTCTGATTATCCTGCCTTCAATGATGGATTCCCCTGTTTCAACAACTCTACCCCCACCTTCTGTAAGATAGTAGTCACATTACTACTATTAAGGAACTCCATTGGAAGGTTATGCATTTGTATCCAGAACGGATTAGAATCAAAGTAGATCTCCTCAATGGTGACTGAAGGAATCCAATACTGTAAACACGTCAAGTGGTTCAAAAAGAACCAGGATGCCCTACCCATTATCTCCTTGCTATGTTTCTCATTTTCAAAAGTAAAAAGAAACTTGTTTCTCTCAAGATCTGAGATCTGGAGATTTTCATAAGATGCCCAGGCTTTTGCAATGACTTCCTTTACTGCATTTCTATTCATTGCTTTATCAGTTAGTAGCTTACCAACGAGGGTTCTTTTGGCTAATTGGGTGTTGTTTTGGTTTGTAGGTATCAGAAACTCATGGAGTTCCTCTGGGTTATCCAGTCGAGGGGGCTGATGTGAAGAGCTAGCCGTCATGATGCTGACAAAATGAGGTTAAATCTGGGTGAGGAATAGGCTCAAGGTTGAGGTTTAGGTTTGAAGATCGTGGTGCTTTGTGTAGATATGAGTAGGGTGTTGTTAGGTTTAGGCTTCGACTGGAATGAAAAGGTTATTTAATGGTTTTATCTGGTTGTAAGGTTTTGGTCATGACCGGCTAGAAAGGTTTTGGACAAGGTTTTATCTGGTTGTAAGTCTTTCATTATTAAATGTAAGCTTAAACAGGTATTTTCAATGGAACAGTGAGATTGTGGATGATTGGGTTGGACGAGGGAATGCGGGTAAGAGCGACTGTGAGGCGTGAGGCGTAAGAGAGGTTGTGAGGCGTGAGGCGGTGAGCAGTAAGATCCAATGGGAAACAATAACCCTAAGGGGAACAACTACCCTAAACCCTGGCAGAGCAAAGGGCAACTGTGAATTTGTTGTATTGTATGCTCTGAAAGTGAAGGGTTAAGGAAAATGATTAGTTTATTTTTTTTGTTGGTCAAATTGTATTGATTTAAAAAGTGGGCATAGGCCCAAACCAATACAAGTCATGTTTAGTCTTTTTCAATATAATATAACATTTGGCTCGTACTTCATACAACCTCCTCTCTACTCACTAGACACCCCCACCCCCACATAATTTTTATTTATCTTTATTTTAAGGCTAAAGTGCTCCCGGGGTCCCTTATCTTTATTTAAAGTAACGATTTGGTCCTTTATCTTTTTTTTGTCCCAAATCAGTCATTTATGTTTTAAATTTTTGACACATAAATCCTTTTCTGTCCCAAATCAGTCCTTTATGTTTCAAATTTTTAACACATAAATCCTTTTTTTTGACACATAAATCAGCACTGTTAACGAAAAAGGATTTGTGTGTCAAAAATTTGAAAGATAAAGGACTTATTTGGGACAAAAAAAACATAAAGGACTAATTCGTTATTTTAAATAAAGATAAGGGACCCCGGGAGCACTTTAGCCTTATTTTAACATTCTATCTTTAGTTGAATAAAATCTAGGAATAATACAAAACAAAACGAAACATTCAATCTTTATTTCATTTTTTGAAACATAAAGAAACAAGAACAACAAATAAAAAACAATAACAAAACTGGCGATTATTTTAAAGTCCTTCTTGCAAAAGATAAATGATCTCGTCCGAAGTGCATATTGTTTCGACATACAGCTCCAAGATATGGCATCCTGCTGGAACATTAGCATGTGTTTCCATCATGGTGCGTACGTCGACATCGCTCCGAATCTCCATAGCGGAATAACGAATAGCCCCATCGTCTCCATAACTGTGCTTGCGATAACGTAAACAACTTACGTCTTTACGCCACTCTCCCTCCCGAAGAACCTTTCTCTCTGCATTTTCCTTCAACTAAGTGAATGTTATATCCTTATTCAACCTACATACCTGTTGGTGATAGTTCCACGGTGATGAAGGACGGTTAGGAATTTGTCATTTGAGTACTGGGTTGGGCACAGCTCCCATTCCATTTCAGCAAGTCGGTGGGGGTAGGGTGTTTGTGAAGAAGCAGAGATGATGAAGCAGAAATGTGGGTAGAGTGTTTGTGAAACTTAGTGAAAAGTGAGAACTTATTTATAATAGGTATGGTCGAATGTGAACCGTTGATTTTAATTGATCAAAACCGTTGAAATTCTATCTGTTGTGGCACAATTTCCAAAGAAAATTTCAACCACTCATTTTTCTAACACGTTTGACTATTTTTTTTGACTGATTATAGGTCGTTGATAATAATGGACAGTGGAATCTAAGCCGTTGAACGACATAAAATATCTGTCATATTTTACAGTGGTTCGGTACTTTGGGTTCGAACCGGTTTGGTTTTTAACTTCTAGACGTGGTAAAATTTTTATTGGAGGATGTGTCTGTCAAGAAACAACACTCAGGAGTTTCGTTCCGAACGGGTTCAGTGGTAAACTTCCGAACCGTCGTAAACTCCGAAAAAGAAAGGGAAACGTGCGTTTCATTAAATGACATTTTCGTCTTTTTGCTACTTTTGGGGGTGTCCAGTGAGTAGAGGGGGGTTGTATGAAATATGGACCTAACATTTATTTATCTTTGGACTGGGCCAATAAGAATGGGCTTTTCGAAGTGGGTTGGGCCTCGACAAAGCATCTCGTGGACAGATAGATCCTCATGTTCAAAAAGGTTGGACCCACAAAAAAGAAAAAGAAACAGGAAAAGGGTAGCCCTAGACAATAAATAGAGGATTTCCGAGGTTTGAAGAGGAGAGACAGAGAGGATCGAGATACCAACAGCAAAAACCCCTCTTTTACTTTCCTTTCTTCTCCGCTAGGGTTTTAGTTTCCTTCGCTTCACTTCTTCCTTTTCTCTTCAATCATCCACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00956.21	NAP	53	294	1.30E-83

Gene family

Gene family	Subfamily
Epigenetic Regulators	NFA2

Gene Ontology

GO term	Description	Category
GO:0000785	chromatin	Cellular Component
GO:0003682	chromatin binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0000724	double-strand break repair via homologous recombination	Biological Process
GO:0016444	somatic cell DNA recombination	Biological Process

InterPro

InterPro term	Description
IPR002164	Nucleosome assembly protein (NAP)
IPR037231	NAP-like superfamily

trEMBL

trEMBL term	Description
I1LY05	_

SwissProt

SwissProt term	Description
NAP1C_TOBAC	Nucleosome assembly protein 1;3

KEGG

KO	Description	Enzyme
K11279	nucleosome assembly protein 1-like 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G19480	nucleosome assembly protein 1;2
Medicago sativa L.	MsG0280011164.01.T01	_
Oryza sativa L.	LOC_Os05g46230.1	NAP domain containing protein, putative, expressed
Cucumis sativus L.	Csa009194	_
Glycyrrhiza uralensis Fisch.	Glyur001974s00028593.4	_
Codonopsis lanceolata	Cl_chr02_03950T	_
Arachis hypogaea L.	AH01G21550.2	Nucleosome assembly protein 1 like

Expression pattern