| Gene ID | Annotation |
|---|---|
| Am06G020900.1 | U5 small nuclear ribonucleoprotein helicase, putative |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G020900.1 | mRNA | Chr06 | 119595798 | 119604087 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF02889.19 | Sec63 | 1023 | 1325 | 1.30E-171 |
| PF02889.19 | Sec63 | 1855 | 2169 | 1.30E-171 |
| PF00270.32 | DEAD | 523 | 699 | 2.50E-54 |
| PF00270.32 | DEAD | 1370 | 1538 | 2.50E-54 |
| PF18149.4 | Helicase_PWI | 275 | 382 | 8.40E-36 |
| PF04851.18 | ResIII | 534 | 697 | 1.40E-28 |
| PF04851.18 | ResIII | 1369 | 1526 | 1.40E-28 |
| PF00271.34 | Helicase_C | 757 | 899 | 5.60E-12 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0008186 | ATP-dependent activity, acting on RNA | Molecular Function |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | Biological Process |
| GO:0140098 | catalytic activity, acting on RNA | Molecular Function |
| GO:0022618 | protein-RNA complex assembly | Biological Process |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR004179 | Sec63 domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014756 | Immunoglobulin E-set |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR035892 | C2 domain superfamily |
| IPR041094 | Brr2, N-terminal helicase PWI domain |
| IPR003593 | AAA+ ATPase domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XG50 | _ |
| SwissProt term | Description |
|---|---|
| DEXHC_ARATH | DExH-box ATP-dependent RNA helicase DExH12 |
| KO | Description | Enzyme |
|---|---|---|
| K12854 | pre-mRNA-splicing helicase BRR2 | [EC: 5.6.2.6] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G20960 | U5 small nuclear ribonucleoprotein helicase, putative |
| Medicago sativa L. | MsG0280009739.01.T01 | _ |
| Oryza sativa L. | LOC_Os02g01880.1 | U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed |
| Cucumis sativus L. | Csa017627 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000090s00011413.1 | _ |
| Codonopsis lanceolata | Cl_chr02_50990T | _ |
| Arachis hypogaea L. | AH12G37710.3 | U5 small nuclear ribonucleoprotein 200 kDa helicase like |