Gene detail

Detail information of Am06G020380.1 Annotation

Gene ID	Annotation
Am06G020380.1	Mitochondrial transcription termination factor family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G020380.1	mRNA	Chr06	115965650	115969187	+

Sequences

CDS:

>Am06G020380.1
ATGTGCTCTGCTCCTGCTGCTGCTGCCGCTGCCACAACACCCTTGTTTTACACCGATCACCACATTCCCAAATCCTTCACTCGCCTCTGCAAGCCCTTCCATTCTAGGGTTCCCACTTCCCTTTCCTTCCATTGCACTCGACCATCCTTCTTTGTCAGGGCTACGGTTGTAAAGTGGCGATGTCCAAAGCAAACTCTCCCTCCCAGCTCCGATACAGGATTCCATAAAAAAGCCCTATATCTGGAATCTATCGGTATCGACTCTTTCTCACTTATTGAGAATCATCCAACGCTGATCACCGCCTCACTCAATGACATAAAATCCACCGTGGAATACATTACCTCCATGGATTTCTCTGCGATTGAGTTCCGGCGTATGGTTGGCATGTGCCCAGAGATTCTAACTACGAAAGTTGCAGACCTCATACCCGTCTTCACTTTCCTTCATCGTGAAGTTCTCGTAAAGGGCTCAGATATCAAGCATGTAATAAATCGCCGTCCGAGGTTGATTATCTGCAGTGTCGATAAGCAACTTCGTCCAACCATGTATTTCCTTCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCTATTTACTATCATGTAGTGTTGAAGAGAAGTTTATGCCAAGGATTGATTACTTTGAGAATATTGGATTCTCTCGCCGCGATGCGACTTCAATGTTTCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCTAAATACAATTACTTTGTGGTGGAGATGGGGAGAAATTTGAAGGAGCTGAAAGAATTTCCACATTATTTCTCATTTAGTTTAGAGAATAGAATCAAACCTAGGCATAAAAGGTGTGTAGAAATGGGTGTGTGTATTCCTCTTCCTTTGTTATTAAAGACTAGTGAAGTTATATTTCAAAATAGATTAGATTCATTTGTAAATTCTTCAACACCCTTGAAAACATCTCCTCTGTGGTGTGCTGGTTGTGATATTGATCAAGTATAG

Protein:

Promoter(3k):

>AM06G020380.1
CTACCAATTAGCCACTGCATTGCTTACAATGGGGAATGGAACCTACGTATGTGCTCTAACCTTCTACCTAATGATATATGCCTGAAAATTCTTCAATTCCTTACTACTTCAACTTTGGATCATGGTGATGACTTTACTCGGAAAGTTAACCCTGATGGGTGCTTCTCTACCCGTTCTGCCTACAAAGCCCTTAGTCCTATTGTTCCTAACCATAATAATTAGTTATTCAACTAATGAGGATTTTGCATCAGTAGGTTTTGACGAGGCTCCATATCCCTTTCTTTTGTTTAAAAAAAAGTGGAAGGGGCTGGAAAGAATTCATACCTTTCTTTGGAAATTTGCTCATGAATCTATGTTCACTAATGTTGAAAAAGCTCGCAGGCAGATGACTAATTCTAAGATTTTCCCTTCTTGAGGTTTATCTGATGAGACTCTCTTTCACCTATTCAGAGATTGTTACAAAAGCTTCAGCATTTGGACCTGTTTTAACATTCGCAAACCAAACCAATTTTACAATTGCACAAATTGGAAAAATTAGCTTAAGTCTAACCTCATGGAGAATGTCACTGGTCATGAAGAGAAGCATTGACCTATCTACTTTGGTGTGGCTCTCGACTTGATCCGGAGAAATCAGAATGATCTGGTCTTCTCCTAGAAAACTTCTGCAACGCAGTCGTCTATTCTCTGCATTCGTAACCAAGTTGATTGCATCATTGACACTTCAATTAGGGGATCGATCCTGAAACCCCTCACCTTAGGCTCTCCCACTAATCCTAAAATTGCGTGGAAGCTCCCCCCAAGCGATGTTTGGAAACTCAATTGTGATGGTGCCACAAGCGATAATGGGAGAATTGCCAGAGGCTGTGGAATCCTACAAAATCACTATGGAAGTTTCGTTTACGCGTTCTCTCACAAAATTGAACCGTGCTCCGCGCTTGAAGCTGAATTGTGGGAAGTCTATCATGGAATCAGTATCGTGTCTGGTTATGGTTAAAAAAATCTAATAATTGAATCCGATTCCCAATAGGTATACGATCTCCTCTCTTCTGGTCTTGATTTTGGACATCTTCTGGTGAATTTGATCAAAGGTGTGAAAAACATGCATGGTTATTGGCGACATTGAGGTGGTGTGGAAGGTTATCTCCATGAAGACCAACACAATTGCAAATCTACTGGCGAAGAAGGGTCTCAATTTGGGTATTGACTATTTAATTTTTGATCACCTTTCGAATTTCTGGTTGAAGCCATTAATTTGGATAGATTGCCTCTTGCTGGGCCTAGCGTAGTGTAGTTTGTTGTCTTTTGGGTCTCTGGCCTTTTGTTCACCCAAAAAAAAATACATAAGGGATTTTTCTAATGATATTTCTTCATTTCACACCAATCCTTCAAATTTAGAGTTATATCTGCGAGAATACGAAGGATTGCTGTGAAATAAATCCATGGATGCAGCATATTTGGTAATTATAAATTTAGAGTTTTGTTAGAGTAAATGGAAGAATTAAGTTGAAATAAATCACCATGTCATGCTAGTGAAGAAGAAGATGATGAAGGCACGAAAACATCTAGGTCACATAAATTATACATAAACTACCTCAAATATATTGTTTATCAAAAAATTTTAAGCTCACTTGATGCAGACCCATGCGATTAAACAAGTAAAGGATTTCAACACTAAGGCTCTGTTTGGCGCGTCCCATCCGCTACGGGATAGCGGATGAAAGTAGCGGGTGAAGAGTAGACGTGTTTGGTAACACTAGCATTTAGCGTTTTTCAGGTAGCATTTAGCATTTTTTCATACGCTATTTCAAGTAGCGTTTTTTCAAAAGCTAGCGGATAGTGTCTCACTTTTTTTTTTGATATTTTTATTCTTTTTATTTTTCTTAAATTACTTCTCTATCCTAATTAAATAAATGTAATAATGGATTAAATAAATACGCCCTTTTAAGACATTTTACATTTATCAGCTATTTCAACCGCTAGTTTTACCAAACATATCATTTGTTATCAGCTAACTTATCCGCTATCCGCTAGCTCATCCGCTCATCCGCTATCCGCTACTTTTTACCAAACAGAACCTAAATGTCTGAATTCTGATATCGTTAATTCCCTGCACCAGATCTGTCGTTGGTCTCGTCCGCCGGATCAATTCATATCCTTATACTGCGATGGTTCGGTTACAGGTGGGGGGAATTTAGCTGGCTGTGGTTGTGTTTCTAGAGACTCAAATGGTGTGTTCCTATTCGCCTTCCCTCACAAATTTGATAGGTGTAACGTGTTAGAAGCCGAATTACGGGCGATCTACCATGGTATTTGCATATCTGTGAGTAAAGGCCACAACAAGATTATTATTGAAGCCGATTCAGCCAACGCTATTTCTCTCCTACAAGCCCTAGAATCCCGTTTGCATCCTCATTATGAGCTCATCCACGGAATCAAAGAAAGTGGTTCAAAATACGGATGATACGGTTGGAAACTCACTCCTAGAGATGAGAATATACCGGCGGACATCTTAGCTAGACATAGTAGATCTATGAATACTACTATTTTTGATAGGGTTCCCACCTTCCTTGAGGATGCCCTTGTTGTAGACTTGATCAGCCTTTTAGTGCCTAGTAATTTATTCTCGTTTGGGGGTTCTTCCCCCTTCCCTTCACCAAAAAAAAGTGTATGATTTGGGTGTTCATAAAACCTAGCACAACTAACAACACTGATATTGGTAGGATGAACATTTTTTGTGGATAGGTGAATTGGAACCCTAATCTCTACTTTGCTAATCCTACTTACTACTTATGATTTGGGTTAGATGGAAGAGAAGAGCGGGTCCCGCAAGAAGTGACACGCATGCACACACTCTCTATCTCCTCATCCACCACTTCTCCAATCCGAAGCACACGCCAGAGATCCTTCCCAAAGCTATTATTCAATAATATTTCACAGCCATAAACCCCACCACCATCACCACCACACCGCACCATTTCTTCTTCTATCCCTAACCAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02536.17	mTERF	66	151	1.90E-41
PF02536.17	mTERF	157	304	1.90E-41

Gene family

Gene family	Subfamily
Transcription Factors Family	mTERF

Gene Ontology

GO term	Description	Category
GO:0001052	plastid PEP RNA polymerase core enzyme binding	Molecular Function
GO:0009295	nucleoid	Cellular Component
GO:0043232	intracellular non-membrane-bounded organelle	Cellular Component
GO:0140899	plastid gene expression	Biological Process
GO:0048598	embryonic morphogenesis	Biological Process

InterPro

InterPro term	Description
IPR003690	Transcription termination factor, mitochondrial/chloroplastic
IPR038538	MTERF superfamily, mitochondrial/chloroplastic

trEMBL

trEMBL term	Description
A0A396J8D7	_

SwissProt

SwissProt term	Description
SL1_ARATH	Protein SEEDLING LETHAL 1, chloroplastic

KEGG

KO	Description	Enzyme
K15031	mitochondrial transcription termination factor family protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G36000	Mitochondrial transcription termination factor family protein
Medicago sativa L.	MsG0280009579.01.T01	_
Oryza sativa L.	LOC_Os03g24590.1	mTERF domain containing protein, expressed
Cucumis sativus L.	Csa011824	_
Glycyrrhiza uralensis Fisch.	Glyur001416s00028540.1	_
Codonopsis lanceolata	Cl_chr04_39560T	_
Arachis hypogaea L.	AH08G02280.1	Chlorophyll synthase, chloroplastic like

Expression pattern