Gene detail

Detail information of Am06G019430.1 Annotation

Gene ID	Annotation
Am06G019430.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G019430.1	mRNA	Chr06	107626910	107629029	-

Sequences

CDS:

>Am06G019430.1
ATGCCAGCTTTGATTTCTGCAAAGTTTCTTTTACTTGTGGGAGAATCATTTCCTATGAGAAGGGCTTTAGTCAATTCTAGGTTTGCTTGGTTTCATAGTAGTGTTCAATGTATGAGTTCTGTTGGACCCCATAATGGTTCCCTCACTTTATCTACCATTGGTTTACAAACTGAAATTGAACCAAAAATTGATGTAAGTGAATCTAAAAAGGTTAAGCCATTGGGTGGTTCTTCTGAGGTTCTCAAGAACAAAAGAAAGCCCTTTGGTGTTAATGTGAAGAAAGGAGTTGGGGTTATAAAGAAACAACAGCATATAGAGTCTGCCCCTTTTGCTGCAAAGTCATTTTCAGAACTTGGTCTTCCAAATGTGTTGATTGAGAGGCTAGAAAAAGAGGGTTTCACTGTTCCGACAGAGGTTCAGTCAGCTGCGGTTCCTACCATTTTGAAGAACCATGATGCTATAATTCAGTCTTATACGGGTTCGGGGAAAACACTGGCGTATTTGCTTCCTATATTATCTGTTATCGGGCCGCTAAGGGGTGAAAGTCTTGAAGGTAATGGTGATGGTGGTGAGCATGGGAAGAAATTGGGAGTTGAGGCAGTGATTATTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAAAAGATATTGGGAATGGATCACAAGAAAATGGTTCAGCAACTTGTGGGAGGTGCGAACCGAACAAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCTATTGTTGTTGGTACGCCTGGTAGGATAGCTGAGCTCAGTGCATCCGGGAAGCTTCGCACTCATGGATGTCGTTATTTGGTATTAGATGAAGTTGATGAACTCCTCTCGTTCAATTTCCGGGAAGACATGCACCGGATTTTGGAGCATGTAGGGAGGAGATCAGGTGCAGGTGCAGATCCAAACCCAAATGCTAAAAGAGCCGAACGTCAGTTAATTATGGTTTCCGCAACTGTGCCATTTTCAGTTGTTAGGGCAGCTAGGAGCTGGGGTTGTGACCCACTTCTGGTTCAAGCAAAAAATGTCGTACCGCTTGAAACCTTGTCTCCTTCCGAGCCTGTCAATTTGTCAACATCTTCTTCATCAAACTCAAGTCCTAACTCATCTATGCCATCTAAGGCTACAGTAGAGAGTCTTCCTCCAGCATTGAAGCACTATTACTGTGTAGTAAGGTTGCAGCACAAAGTTGATACATTGAGAAAGTGTATTCATGCACTGGATGCCAAATTTGTTATTGCTTTCATGAACCATACAAAGCAGCTCAAAGATGTTGTCTTCAAACTGGAGGCTCGCGGGATGAAAGCCGCAGAGTTACATGGGGATCTTGGGAAGCTTGCTAGGTCAACAACTCTGAAGAAATTCAAAAATGGCGAGGTTAGAGTTTTGGTGACAAATGAATTATCAGCAAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTGCCTACTGATTCGATTCATTATGCGCACCGTGCTGGCCGTACTGGTCGGCTTGGTAGGAATGGTAACGTGCTAACCATATGTGAAGAGTCAGAGGTGTTTGTTGTGAAGAAATTGCAGAAGCAACTTGGAGTGCCGATCGGATGCTGTGATTTTGTTGAGGGAAAGCTTCTTGTCACTGAAGAAGAAGAGAAAACACTAAGCAGCACTTCTTGA

Protein:

Promoter(3k):

>AM06G019430.1
GATTACATGGGATTAAAGAAAAAGAATAAAGAAAAGTGAAAAGTGAAAAGAAAAATGTGTTGTATCATCAAATGCGCTGTATAAGAAAAATGCATTGTATCATCAAATGCGCTGTAAAAAAAAAAGAAATAAAGCAAAGTGAATAAAAAAAATAAAAAGAAAAAGAATAAAAAAAGAATAAAGCAAAGTGAATAAGAAAAGAAAAGTTAAGACGAAATTCTTGAACATCATTATTCCTCACCCGGTTATCTTTATCCCTTATATAAGAATAAAGCAAAATGAATAAGAAAAACAAAGTTAATACGAAATTCTTGACCATCATTATTCCTCACCCGGTTATCTTTATCCCTTATAAATGAATAAAGCAAAGTTAATACGAAAGTGAAACGAAAAAGTCCCTTGATTTTTCTTTCCGTCATCTCCTTATAACTCACGGTCGTGATGACGGGTTGGATCCAGCGGTGCTCGGAACTTCGGTGAGAAACGCGGGAATGCCGCCACCTGCAAGCACTCCGACGCCCAAATCAATCTATAATAGAGACAGAGCATTTTGTGGAGTGGAGAGAGCATACCTTTTTAGGAGTATTTATAGTGGGGTAATGAGCTTACCCTAAAAGCTTCCCGATATTGGGCTTAGTGCCTTTCAGTTTTGGGTTGGCTTGCATTTGGCCCATTTGATGGCTTTTGACCAATACAAAATACTTTTAAAATAGGACCATACTTCATACAACTCCCCTCTACTTAGTGGACACCCCCAAATTTTAAATATTCCCAAATTGCCCTCACGTGGGATACACGTGGACATTGTTCCAATATCAGGTTCCGGGGAGCGTAGTCCGAATCAGTTCGACACTAATCCTTTCTACGGTGCTAGTTGGTTTTAAGTGCTTACTGTCCATAAAGGATAAATGCGTTGTATCATCAAATCAGAATATGAAAAATAGTGATCTAAAATAATTTTTTTGAGTTCAGGAACAATTTCTTTGGTAGTGATTACACGAGATTAAAGAAAAAGAATAAAGAAAAGTGAAAAGTGAAAAGAAAAATGTGATGTATCATCAAATGCACCGTAAAAGAAAGAAATAAAAGTGAATAAAAAAGTAAAAAGAAAACGAATAAAAAAAAAGAATAAAGCAAAGTGAATAAGAAATGCAAAGTTAATACGAAATTCTTGACTATCATTATTCCCTCCCCCGGTTATCTTTATCTCTTATAAAAGAATAAAAGAAAGTGAATAAAAAAAGCAAAGTTAATACGAAACCGAAAAGAAAAAGTCCCTTGATCTTTCTTCTTTATCAACATCTCTACCATATATGCTAGAGTCATCCATCTAGTATGAAGTTTGCAAACTAACGGAGGGTCTCCAATGGACTCCATATTTATCATTAGCATAAGTTCCTTCTTTGAATCCCAACATATCCTTTTGCTTTCCAAGAAATGCTAGCTGCTCTTGCAATTCACTGATCCTGGATTCAAATGGATCATTAGCAAAAATTGAAAAGGGCCACACCCCATCGTTCTGTCGTTCATGTGTAGCAATCTCATCCAACAATTGGTCTACTTCATATACATAATGTTCTAAATCATCAAGCCAATTCCTCACATATAGCTCGTTTATTTATATGCCTAATGTTAATTTGTTTATTCTTTTGCATTCTAGTTAATTAAATTGGACTATTAATTTTTTGGATTTCATTTAGACTATTAATTAATCCAAATGAGCTTACCTTTAAAGCTTCCCAATTGGGCTTAGTGCCTTTTAGTTTTGGGTTGGCTAGTATTTGGCCCGTTTGATAGCTTTTGACCAATCCAAAATACTTTTAAAATAAGAGTTGTATTGATCAATTGATGTGTATTTTGTACAATATTTACTAGTGTTATTTATAGACAAAGAACCTATGCCTAATTTCCATATGCCACTACTACTAGATGGCATAAATCATTTGCGAGCTTCCACGTGTATTTCTCAATTGTCACTACCTAGCTACTCCATCCAATAATCAGCTCATTTTCCCTAATCTTAGGGGGGCTTATATCATGATGCTCACAAAAAGATTTTTTTATATGAAATTGAAAGTTAAAGTTTAGAGATAGATGTAGATGATGCATTTTAAAATTTATTGATTTTGTGAAATTTAAAAGTGCAAATAAGCAAGTGTCAGTGATATTGGTGCTCAGTGTCCACCGACTTTGTTAGTCTTGTGATTCTCTCCTTACAAGATTTGAACCCTAAATCTTGGGTGGGATCTGCTCCTAATTACCACTCGACCAATTCTCGTTGGTATTGATAGTAAGTATGTAATAATCAATAAAGGTCTTTTTTTCCCTTTCAAAAATAATAAAAGACTTTTCAAAAATAAATTTTTTATGAAAACTTTTTCAAAAATAATTAACAATATTACGCCCTTAGTGTTTTTTTCAAAAAAAATTCCACAATTAGTTTGTGTTTTTTAAAATAATTTAACCTATTTTTTTGTTTGTGTTTTTTTGACACAATTGTTTGTGTTTTTTTTTTAACTCTATTAGTTTTTTGATAAAAAAAAACTCTGTTAGTTTATCTCTATTTTCTTCTCCGAAGGTAACTTCCCCACTCGCAAACTCACAACTCACAGAATAGCTCTGAAAAATCTGATGTTCAACTCTTCGCAATTTCCTCAACCTCCAAGCCACGAACGAAGCCACCCAATTTCCGTATTTCAACTACTTGGTAATTCGTAGTTCATAACTATTCTGTTCAGATTGCGGTCGCAGTTGCAACAAATTTCTCACATCTCTTCACTCAGTGACACAATCCAAAAAGGTTTCATCTTATCACCACCCTTAACTTGTTCCAAAGTTTAATTCTTTTTTTTTCTTGCGTGTGAATTTTTCTAGTTCTTATCATTATCAGAATTTGTGGTTTGTGTGGAAACATTGCCGCCGTTAATATTATTCCCTTGTCCCATTTGGAAGAGCAACAAAGAATAAGGTTACTGTTTTCTGTTAATAAAGAAAAGAAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	137	333	1.20E-39
PF00271.34	Helicase_C	407	513	1.70E-21
PF04851.18	ResIII	149	282	3.30E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003724	RNA helicase activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
A0A8B8KDJ0	_

SwissProt

SwissProt term	Description
RH47B_ORYSJ	DEAD-box ATP-dependent RNA helicase 47B

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G12770	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Medicago sativa L.	MsG0280009445.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa017994	_
Glycyrrhiza uralensis Fisch.	Glyur001086s00029543.1	_
Codonopsis lanceolata	Cl_chr02_50670T	_
Arachis hypogaea L.	AH01G33130.1	DEAD-box ATP-dependent RNA helicase 47A like

Expression pattern